Research Explorer

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Researcher

Stephen Depuydt

Awards & Distinctions

66 Results

2024

Assessing the reliability of point mutation as data augmentation for deep learning with genomic data

Hyunjung LeeUtku ÖzbulakHomin ParkStephen DepuydtWesley De NeveJoris Vankerschaver

A1 Journal Article in BMC BIOINFORMATICS

Harnessing the power of tidal flat diatoms to combat climate change

Jihae ParkHojun LeeJana AsselmanColin JanssenStephen DepuydtJonas De SaegerThomas FriedlKoen SabbeWim VyvermanCatharina J. M. Philippart et al.

A1 Journal Article in CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

2023

Effects of CuO-NPs on Mychonaste afer

Yechan KimMirae KimYoung Seock YuJin Sung OhHwangju KimSangmin JeonJihae ParkStephen DepuydtDi WuPhilippe Heynderickx et al.

Evaluating ecotoxicological assays for comprehensive risk assessment of toxic metals present in industrial wastewaters in the Republic of Korea

Jihae ParkKisik ShinHojun LeeSoyeon ChoiGeonhee KimStephen DepuydtJonas De SaegerPhilippe HeynderickxDi WuJana Asselman et al.

A1 Journal Article in SCIENCE OF THE TOTAL ENVIRONMENT

How to make sense of 3D representations for plant phenotyping : a compendium of processing and analysis techniques

Negin HarandiBreght VandenbergheJoris VankerschaverStephen DepuydtArnout Van Messem

A1 Journal Article in PLANT METHODS

Metal Toxicity across Different Thallus Sections of the Green Macroalga, Ulva australis

Hojun LeeGeonhee KimStephen DepuydtKisik ShinTaejun HanJihae Park

U Journal Article in Toxics

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku ÖzbulakHyun Jung LeeJasper ZuallaertWesley De NeveStephen DepuydtJoris Vankerschaver

A1 Journal Article in BIOINFORMATICS

Physiological and biochemical responses of Mychonaste afer to silver (Ag) and silver nanoparticles (Ag-NPs)

Young Seock YuMirae KimYechan KimSoyeon BackSunju BaeJihae ParkStephen DepuydtDi WuPhilippe HeynderickxTaejun Han et al.

2022

A blueprint for national ecological risk assessment based on indigenous aquatic organisms including microalgae

Hojun LeeJoon-Tae ParkStephen DepuydtPhilippe HeynderickxDi WuJana AsselmanColin JanssenTaejun HanJihae Park

A ten-minute bioassay to test metal toxicity with the freshwater flagellate Euglena agilis

Soyeon ChoiHojun LeeMin-Soo LeeJoon Tae ParkPhilippe HeynderickxDi WuStephen DepuydtJana AsselmanColin JanssenDonat P. Haeder et al.

A1 Journal Article in BIOLOGY-BASEL

Commercial potential of the Cyanobacterium Arthrospira maxima : physiological and biochemical traits and the purification of phycocyanin

Jihae ParkHojun LeeThai Binh DinhSoyeon ChoiJonas De SaegerStephen DepuydtMurray T. BrownTaejun Han

A1 Journal Article in BIOLOGY-BASEL

Fluorescence and lipid bodies as potential new endpoint markers for toxicity tests to complement cell number in the benthic diatom Cylindrotheca closterium

Jihae ParkHojun LeeStephen DepuydtPhilippe HeynderickxDi WuTaejun Han

IMPLANT : a new technique for transgene copy number estimation in plants using a single end-point PCR reaction

Jonas De SaegerJihae ParkKai ThorisCharlotte De BruynHoo Sun ChungDirk InzéStephen Depuydt

A1 Journal Article in PLANT METHODS

Interlaboratory validation of toxicity testing using the duckweed Lemna minor root-regrowth test

Jihae ParkEun-Jin YooKisik ShinStephen DepuydtWei LiKlaus-J. AppenrothAdam D. LillicrapLi XieHojun LeeGeehyoung Kim et al.

A1 Journal Article in BIOLOGY-BASEL

MAX2-dependent competence for callus formation and shoot regeneration from Arabidopsis thaliana root explants

Arne TemmermanMaria Marquez GarciaStephen DepuydtSilvia BruznicanCarolien De CuyperAnnick De KeyserFrançois-Didier BoyerDanny VereeckeSylwia Magdalena StrukSofie Goormachtig

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

Opposing effects of trans- and cis‐cinnamic acid during rice coleoptile elongation

Lena VlaminckBrix De RouckSandrien DesmetThijs Van GerreweyGeert GoeminneLien De SmetVeronique StormeTina KyndtKristof DemeestereGodelieve Gheysen et al.

A1 Journal Article in PLANT DIRECT

Utilizing mutations to evaluate interpretability of neural networks on genomic data

Utku ÖzbulakSolha KangJasper ZuallaertStephen DepuydtJoris Vankerschaver

2021

Agrobacterium strains and strain improvement : present and outlook

Jonas De SaegerJihae ParkHoo Sun ChungJean-Pierre HernalsteensMaria Van LijsebettensDirk InzéMarc Van MontaguStephen Depuydt

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Application of Ulva australis reproduction inhibition test to assess toxicity of industrial wastewater

Hojun LeeStephen DepuydtPhilippe HeynderickxDi WuTaejun HanJihae Park

Assessment of aquatic toxicity testing methods using Ulva pertusa (green alga), Undaria pinnatifida (brown alga) and Lemna minor (duckweed)

Hojun LeeStephen DepuydtTaejun Han

Assessment of various toxicity endpoints in duckweed (Lemna minor) at the physiological, biochemical, and molecular levels as a measure of diuron stress

Hojun LeeStephen DepuydtKisik ShinSoyeon ChoiGeonhee KimYun Haeng LeeJoon Tae ParkTaejun HanJihae Park

A1 Journal Article in BIOLOGY-BASEL

Extracts of red seaweed, Pyropia yezoensis, inhibit melanogenesis but stimulate collagen synthesis

Jihae ParkHojun LeeSoyeon ChoiLalit K. PandeyStephen DepuydtJonas De SaegerJoon-Tae ParkTaejun Han

A1 Journal Article in JOURNAL OF APPLIED PHYCOLOGY

Functionalization of two-dimensional transition metal oxides for the sensing applications

Zihan WeiSerge ZhuiykovStephen Depuydt

Towards growth increases in rice via complementary approaches through genetic engineering and chemical screening

Jonas De SaegerStephen DepuydtDirk Inzé

Unraveling the MAX2 protein network in Arabidopsis thaliana : identification of the protein phosphatase PAPP5 as a novel MAX2 interactor

Sylwia Magdalena StrukCarolien De CuyperAnse JacobsLukas BraemAlan WaltonAnnick De KeyserStephen DepuydtLam Dai VuIve De SmetFrançois-Didier Boyer et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2020

Application of a programmed semi-automated Ulva pertusa bioassay for testing single toxicants and stream water quality

Hojun LeeJihae ParkKisik ShinStephen DepuydtSoyeon ChoiJonas De SaegerTaejun Han

A1 Journal Article in AQUATIC TOXICOLOGY

Assessment of five live-cell characteristics in periphytic diatoms as a measure of stress

Jihae ParkHojun LeeStephen DepuydtTaejun HanLalit K. Pandey

A1 Journal Article in JOURNAL OF HAZARDOUS MATERIALS

Bioassays and bioactive compounds for improving rice elongation growth

Lena VlaminckStephen DepuydtBartel VanholmeGodelieve Gheysen

Development of a novel and rapid phenotype-based screening method to assess rice seedling growth

Lena VlaminckChananchida Sang-aramDeborah BottermanChristine UyMary Kay HarperDirk InzéGodelieve GheysenStephen Depuydt

A1 Journal Article in PLANT METHODS

Phenotypic effects and molecular mode-of-action of coumarin on Arabidopsis thaliana

Stan Van PraetStephen DepuydtBartel Vanholme

Rapid toxicity assessment of six antifouling booster biocides using a microplate-based chlorophyll fluorescence in Undaria pinnatifida gametophytes

Hojun LeeStephen DepuydtSoyeon ChoiTaejun HanJihae Park

A1 Journal Article in ECOTOXICOLOGY

2019

Reappraisal of the toxicity test method using the green alga Ulva pertusa Kjellman (Chlorophyta)

Hojun LeeMurray T BrownSoyeon ChoiLalit K PandeyJonas De SaegerKisik ShinJang K KimStephen DepuydtTaejun HanJihae Park

A1 Journal Article in JOURNAL OF HAZARDOUS MATERIALS

Towards a multi-bioassay-based index for toxicity assessment of fluvial waters

Lalit K PandeyIsabelle LavoieSoizic MorinStephen DepuydtJie LyuHojun LeeJinho JungDong-Hyuk YeomTaejun HanJihae Park

A1 Journal Article in ENVIRONMENTAL MONITORING AND ASSESSMENT

2018

Testing the toxicity of metals, phenol, effluents, and receiving waters by root elongation in Lactuca sativa L.

Jie LyuJihae ParkLalit Kumar PandeySoyeon ChoiHojun LeeJonas De SaegerStephen DepuydtTaejun Han

A1 Journal Article in ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

2017

Comparative assessment of single and joint effects of diuron and Irgarol 1051 on Arctic and temperate microalgae using chlorophyll a fluorescence imaging

Sreejith KottuparambilMurray T BrownJihae ParkSoyeon ChoiHojun LeeHan-Gu ChoiStephen DepuydtTaejun Han

A1 Journal Article in ECOLOGICAL INDICATORS

Comparing the acute sensitivity of growth and photosynthetic endpoints in three Lemna species exposed to four herbicides

Jihae ParkMurray T BrownStephen DepuydtJang K KimDam-Soo WonTaejun Han

A1 Journal Article in ENVIRONMENTAL POLLUTION

Evaluation of freshwater Lemna spp. and Spirodela polyrhiza, higher plant Lactuca sativa and marine macroalga Ulva pertusa as potential phytotoxicity test model organisms

Jihae ParkStephen Depuydt

Highly sensitive, fast-responding, and stable photodetector based on ALD-developed monolayer TiO2

Mohammad Karbalaei AkbariZhenyin HaiStephen DepuydtEugene KatsJie HuSerge Zhuiykov

A1 Journal Article in IEEE TRANSACTIONS ON NANOTECHNOLOGY

Implications of rising temperatures for gametophyte performance of two kelp species from Arctic waters

Jihae ParkJang K KimJeong-Ae KongStephen DepuydtMurray T BrownTaejun Han

A1 Journal Article in BOTANICA MARINA

Photodetector with superior functional capabilities based on monolayer WO3 developed by atomic layer deposition

Zhenyin HaiMohammad Karbalaei AkbariChenyang XueHongyan XuStephen DepuydtSerge Zhuiykov

A1 Journal Article in SENSORS AND ACTUATORS B-CHEMICAL

The use of diatoms in ecotoxicology and bioassessment : insights, advances and challenges

Lalit K. PandeyElizabeth A. BergeyJie LyuJihae ParkSoyeon ChoiHojun LeeStephen DepuydtYoung-Tae OhSung-Mo LeeTaejun Han

A1 Journal Article in WATER RESEARCH

Ultrasensitive, sustainable, and selective electrochemical hydrazine detection by ALD-developed two-dimensional WO3

Zihan WeiZhenyin HaiMohammad Karbalaei AkbariJie HuLachlan HydeStephen DepuydtFrancis VerpoortSerge Zhuiykov

A1 Journal Article in CHEMELECTROCHEM

2016

How plant hormones and their interactions affect cell growth

Stephen DepuydtStan Van PraetHilde NelissenBartel VanholmeDanny Vereecke

Bookchapter in Molecular cell biology of the growth and differentiation of plant cells

Strigolactones spatially influence lateral root development through the cytokinin signaling network

Lingxiang JiangCedrick MatthysBelen Marquez-GarciaCarolien De CuyperLien SmetAnnick De KeyserFrançois-Didier BoyerTom BeeckmanStephen DepuydtSofie Goormachtig

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

The role of strigolactones in lateral root development

Lingxiang JiangSofie GoormachtigStephen Depuydt

The sensitivity of an hydroponic lettuce root elongation bioassay to metals, phenol and wastewaters

Jihae ParkJeong-hyun YoonStephen DepuydtJung-Woo OhYoun-min JoKyungtae KimMurray T BrownTaejun Han

A1 Journal Article in ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

2015

Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana

Elisabeth StesStephen DepuydtAnnick De KeyserCedrick MatthysKris AudenaertKoichi YoneyamaStefaan WerbrouckSofie GoormachtigDanny Vereecke

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

The IBO germination quantitative trait locus encodes a phosphatase 2C-related variant with a nonsynonymous amino acid change that interferes with abscisic acid signaling

Amelia Amiguet-VercherLuca SantuariMiguel Gonzalez-GuzmanStephen DepuydtPedro L RodriguezChristian S Hardtke

A1 Journal Article in NEW PHYTOLOGIST

2014

Arguments for and against self and non-self root recognition in plants

Stephen Depuydt

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

Combining linkage and association mapping identifies RECEPTOR-LIKE PROTEIN KINASE1 as an essential Arabidopsis shoot regeneration gene

Hans MotteAnnelies VercauterenStephen DepuydtSofie LandschootDanny GeelenStefaan WerbrouckSofie GoormachtigMarnik VuylstekeDanny Vereecke

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular genetic framework for protophloem formation

Antia Rodriguez-VillalonBojan GujasYeon He KangAlice S BredaPietro CattaneoStephen DepuydtChristian S Hardtke

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New strigolactone analogs as plant hormones with low activities in the rhizosphere

François-Didier BoyerAlexandre de Saint GermainJean-Bernard PouvreauGuillaume ClavéJean-Paul PilotAmélie RouxAmanda RasmussenStephen DepuydtDominique LauresserguesNicolas Frei dit Frey et al.

A1 Journal Article in MOLECULAR PLANT

2013

Strigolactones fine-tune the root system

Amanda RasmussenStephen DepuydtSofie GoormachtigDanny Geelen

A1 Journal Article in PLANTA

Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3

Stephen DepuydtAntia Rodriguez-VillalonLuca SantuariCéline Wyser-RmiliLaura RagniChristian S Hardtke

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The leafy gall syndrome induced by Rhodococcus fascians

Elisabeth StesIsolde FrancisIne PertryAlicja DolzblaszStephen DepuydtDanny Vereecke

A1 Journal Article in FEMS MICROBIOLOGY LETTERS

2011

Hormone signalling crosstalk in plant growth regulation

Stephen DepuydtChristian S Hardtke

A1 Journal Article in CURRENT BIOLOGY

2010

Rhodococcus fascians impacts plant development through the dynamic Fas-mediated production of a cytokinin mix

Ine PertryKaterina VáclavíkováMarkéta GemrotováLukáš SpíchalPetr GaluszkaStephen DepuydtWim TemmermanElisabeth StesAnnick De KeyserMichael Riefler et al.

A1 Journal Article in MOLECULAR PLANT-MICROBE INTERACTIONS

2009

An integrated genomics approach to define niche establishment by Rhodococcus fascians

Stephen DepuydtSandra TrenkampAlisdair FernieSamira ElftiehJean-Pierre RenouMarnik VuylstekeMarcella HolstersDanny Vereecke

A1 Journal Article in PLANT PHYSIOLOGY

Eternal youth, the fate of developing Arabidopsis leaves upon Rhodococcus fascians infection

Stephen DepuydtLieven De VeylderMarcella HolstersDanny Vereecke

A1 Journal Article in PLANT PHYSIOLOGY

Identification of Rhodococcus fascians cytokinins and their modus operandi to reshape the plant

Ine PertryKaterina VáclavíkováStephen DepuydtPetr GaluszkaLukás SpíchalWim TemmermanElisabeth StesThomas SchmüllingTatsuo KakimotoMarc Van Montagu et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2008

Modulation of the hormone setting by Rhodococcus fascians results in ectopic KNOX activation in Arabidopsis

Stephen DepuydtKarel DoležalMaria Van LijsebettensThomas MoritzMarcella HolstersDanny Vereecke

A1 Journal Article in PLANT PHYSIOLOGY

Molecular biology of the Rhodococcus fascians-plant interaction

Stephen DepuydtMarcella HolstersDanny Vereecke

Rhodococcus fascians, an emerging threat for ornamental crops

Stephen DepuydtMelodie PutnamMarcella HolstersDanny Vereecke

Bookchapter in Floriculture, ornamental and plant biotechnology : advances and topical issues

2006

Evolutionary algorithms and flow cytometry to examine the parameters influencing transconjugant formation

Nico BoonStephen DepuydtWilly Verstraete

A1 Journal Article in FEMS MICROBIOLOGY ECOLOGY

Pathogenicity strategies in the gall-forming bacterium Rhodococcus fascians

Isolde FrancisIne PertryStephen DepuydtElisabeth StesMarcella HolstersDanny Vereecke

The phytopathogen Rhodococcus fascians breaks apical dominance and activates axillary meristems by inducing plant genes involved in hormone metabolism

Carmen Simón-MateoStephen DepuydtCarmen De Oliveira ManesFilip CnuddeMarcella HolstersKoen GoethalsDanny Vereecke

A1 Journal Article in MOLECULAR PLANT PATHOLOGY