Research Explorer

Your browser does not support JavaScript or JavaScript is not enabled. Without JavaScript some functions of this webapplication may be disabled or cause error messages. To enable JavaScript, please consult the manual of your browser or contact your system administrator.

Researcher

Sofie Van Landeghem

Awards & Distinctions

23 Results

2016

Cell line name recognition in support of the identification of synthetic lethality in cancer from text

Suwisa KaewphanSofie Van LandeghemTomoko OhtaYves Van de PeerFilip GinterSampo Pyysalo

A1 Journal Article in BIOINFORMATICS

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

Sofie Van LandeghemThomas Van ParysMarieke DuboisDirk InzéYves Van de Peer

A1 Journal Article in BMC BIOINFORMATICS

2015

Application of the EVEX resource to event extraction and network construction : Shared Task entry and result analysis

Kai HakalaSofie Van LandeghemTapio SalakoskiYves Van de PeerFilip Ginter

A1 Journal Article in BMC BIOINFORMATICS

The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining

Dora SzakonyiSofie Van LandeghemKatja BaerenfallerLieven BaeyensJonas BlommeRubén Casanova-SáezStefanie De BodtDavid Esteve-BrunaFabio FioraniNathalie Gonzalez Sanchez et al.

A2 Journal Article in CURRENT PLANT BIOLOGY

2014

What is stress? : dose-response effects in commonly used in vitro stress assays

Hannes ClaeysSofie Van LandeghemMarieke DuboisKatrien MaleuxDirk Inzé

A1 Journal Article in PLANT PHYSIOLOGY

2013

Large-scale event extraction from literature with multi-level gene normalization

Sofie Van LandeghemJari BjorneChih-Hsuan WeiKai HakalaSampo PyysaloSophia AnaniadouHung-Yu KaoZhiyong LuTapio SalakoskiYves Van de Peer et al.

A1 Journal Article in PLOS ONE

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Sofie Van LandeghemStefanie De BodtZuzanna DrebertDirk InzéYves Van de Peer

A1 Journal Article in PLANT CELL

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

Klaas VandepoeleMichiel Van BelGuilhem RichardSofie Van LandeghemBram VerhelstHervé MoreauYves Van de PeerNigel GrimsleyGwenael Piganeau

A1 Journal Article in ENVIRONMENTAL MICROBIOLOGY

2012

Exploring biomolecular literature with EVEX : connecting genes through events, homology, and indirect associations

Sofie Van LandeghemKai HakalaSamuel RönnqvistTapio SalakoskiYves Van de PeerFilip Ginter

A1 Journal Article in ADVANCES IN BIOINFORMATICS

Playing hide and seek on the genomic playground: unveiling biological function from literature

Sofie Van LandeghemYves Van de PeerBernard De BaetsYvan Saeys

PubMed-scale event extraction for post-translational modifications, epigenetics and protein structural relations

Jari BjörneSofie Van LandeghemSampo PyysaloTomoko OhtaFilip GinterYves Van de PeerSophia AnaniadouTapio Salakoski

Semantically linking molecular entities in literature through entity relationships

Sofie Van LandeghemJari BjörneThomas AbeelBernard De BaetsTapio SalakoskiYves Van de Peer

A1 Journal Article in BMC BIOINFORMATICS

2011

EVEX: a PubMed-scale resource for homology-based generalization of text mining predictions

Sofie Van LandeghemFilip GinterYves Van de PeerTapio Salakoski

High-precision bio-molecular event extraction from text using parallel binary classifiers

Sofie Van LandeghemBernard De BaetsYves Van de PeerYvan Saeys

A1 Journal Article in COMPUTATIONAL INTELLIGENCE

U-Compare bio-event meta-service : compatible BioNLP event extraction services

Yoshinobu KanoJari BjorneFilip GinterTapio SalakoskiEkaterina BuykoUdo HahnKevin CohenKarin VerspoorChristophe RoederLawrence Hunter et al.

A1 Journal Article in BMC BIOINFORMATICS

2010

Discriminative and informative features for biomolecular text mining with ensemble feature selection

Sofie Van LandeghemThomas AbeelYvan SaeysYves Van de Peer

A1 Journal Article in BIOINFORMATICS

Event based text mining for integrated network construction

Yvan SaeysSofie Van LandeghemYves Van de Peer

Highlights of the BioTM 2010 workshop on advances in bio text mining

Thomas AbeelSofie Van LandeghemRoser MoranteVincent Van AschYves Van de PeerWalter DaelemansYvan Saeys

Editorial material

Integrating automated literature searches and text mining in biomarker discovery

Maté OngenaertLuc Dehaspe

Integration of static relations to enhance event extraction from text

Sofie Van LandeghemSampo PyysaloTomoko OhtaYves Van de Peer

2009

Analyzing text in search of bio-molecular events: a high-precision machine learning framework

Sofie Van LandeghemYvan SaeysBernard De BaetsYves Van de Peer

2008

Benchmarking machine learning techniques for the extraction of protein-protein interactions from text

Sofie Van LandeghemYvan SaeysYves Van de PeerBernard De Baets

Extracting protein-protein interactions from text using rich feature vectors and feature selection

Sofie Van LandeghemYvan SaeysYves Van de PeerBernard De Baets