Research Explorer

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Researcher

Sofie De Maeseneire

Publications & Research Data

Awards & Distinctions

151 Results

2025

Correction : Bubbling insights : unveiling the true sophorolipid biosynthetic pathway by Starmerella bombicola

Sophie RoelantsStijn BovijnElvira BytyqiNicolas de FoozGoedele LuytenMartijn CasteleinThibo Van de CraenZhoujian DiaoKarolien MaesTom Delmulle et al.

Developing microbial cell factories for natural product biosynthesis through codon harmonization and pathway balancing

Jeltien RombautThomas WillemsWim HectorsAnne-Sofie De RopMaarten De MolSofie De MaeseneireWim Soetaert

Food iminosugars and related synthetic derivatives shift energy metabolism and induce structural changes in colon cancer cell lines

Thomas MontebugnoliCharlotte GrootaertAlessandra BordoniAndreja RajkovicElien AlderweireldtJeltien RombautSofie De MaeseneireJohn Van CampMaarten De Mol

A1 Journal Article in FOODS

From genetic resources to bioprocess development : tools and technologies to help you create a robust microbial fermentation process

Maarten De MolAnne-Sofie De RopJeltien RombautThomas WillemsThomas MontebugnoliCharlotte GrootaertMarieke MispelaereElien AlderweireldtWim HectorsNico Snoeck et al.

From winery waste to biosurfactants : white grape pomace fractionation, characterization and bioconversion towards sophorolipids

Joana De Melo MartinsStijn BovijnTom DelmulleSofie De MaeseneireLuísa S. SerafimSílvia PetronilhoWim Soetaert

A1 Journal Article in FOODS

Iminosugar effects on (cancer) cell lines, and their biomanufacturing

Marco FernandezThomas MontebugnoliCharlotte GrootaertAndreja RajkovicElien AlderweireldtJeltien RombautSofie De MaeseneireJohn Van CampMaarten De Mol

MariClus : your one-stop platform for information on marine natural products, their gene clusters and producing organisms

Maarten De MolJeltien RombautAnne-Sofie De RopThomas WillemsWim HectorsNico SnoeckMarieke MispelaereCedric HermansSofie De MaeseneirePaco Hulpiau et al.

MariClus : your one-stop platform for information on marine natural products, their gene clusters and producing organisms

Maarten De MolCedric HermansMarieke MispelaereAnne-Sofie De RopJeltien RombautTesneem NusayrRebecca CreamerSofie De MaeseneireWim SoetaertPaco Hulpiau

Microbial upcycling of food waste with Starmerella bombicola for biosurfactant production

Thibo Van de CraenKarolien MaesSofie LodensSofie De MaeseneireSophie RoelantsWim Soetaert

Modulation of bioenergetics and cell growth in intestinal cancer lines by natural and synthetic iminosugars

Thomas MontebugnoliCharlotte GrootaertAllessandra BordoniAndreja RajkovicElien AlderweireldtJeltien RombautSofie De MaeseneireJohn Van CampMaarten De Mol

Modulation of cell growth and metabolism by natural and synthetic iminosugars in intestinal tumor cell lines

Thomas MontebugnoliCharlotte GrootaertAlessandra BordoniAndreja RajkovicSofie De MaeseneireJohn Van CampMaarten De Mol

Natural and synthetic iminosugars reduce colorectal cancer cell viability and alter bioenergetic metabolism via specific mechanisms

Thomas MontebugnoliCharlotte GrootaertAlessandra BordoniAndreja RajkovicSofie De MaeseneireJohn Van CampMaarten De Mol

Novel biosurfactants produced from food waste : a variability and validation study

Thibo Van de CraenSophie RoelantsKarolien MaesSofie LodensSofie De MaeseneireWim SoetaertTom Delmulle

A1 Journal Article in BIORESOURCE TECHNOLOGY

Novel iminosugar enzymes and products through metagenomics

Anne-Sofie De RopMaarten De MolSofie De MaeseneireInari WillemsMarieke MispelaerePaco HulpiauWim Soetaert

Screening for iminosugar enzymes through (meta)genomic analysis of actinomycetes

Anne-Sofie De RopJeltien RombautMaarten De MolSofie De MaeseneireMarieke MispelaerePaco HulpiauWim Soetaert

Sustainable production methods for novel glycolipid biosurfactants

Stijn BovijnWim SoetaertSofie De MaeseneireBart Devreese

Tool development enables efficient engineering of the yeast Starmerella bombicola for uniform biosurfactant production from waste streams

Stijn BovijnJoana De Melo MartinsSofie De MaeseneireTom DelmulleWim Soetaert

2024

A lock mass-independent workflow for comprehensive untargeted processing and mass realignment of AIMS data

Nicolas de FoozMarilyn De GraeveVera PlekhovaPablo VangeenderhuysenSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

Bubbling insights : unveiling the true sophorolipid biosynthetic pathway by Starmerella bombicola

Sophie RoelantsStijn BovijnElvira BytyqiNicolas de FoozGoedele LuytenMartijn CasteleinThibo Van de CraenZhoujian DiaoKarolien MaesTom Delmulle et al.

A1 Journal Article in BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS

Cross-species evaluation of the usage of mitochondrial origin of replication sequences for plasmid maintenance in ascomycetous yeasts

Goedele LuytenElvira BytyqiMaarten De MolSofie De MaeseneireSophie RoelantsWim Soetaert

From genome mining to microbial factories : bridging gaps in natural product biosynthesis

Maarten De MolJeltien RombautAnne-Sofie De RopThomas WillemsWim HectorsNico SnoeckVictoria MarcoenMarieke MispelaereCedric HermansSofie De Maeseneire et al.

Genetic engineering of the yeast Starmerella bombicola for efficient production of biosurfactants from waste streams

Stijn BovijnJoana De Melo MartinsSophie RoelantsSofie De MaeseneireWim Soetaert

Investigation and implementation of a fungal biosynthetic gene cluster related to iminosugars

Thomas WillemsWim SoetaertSofie De MaeseneireMaarten De Mol

Microbial upcycling of food waste with Starmerella bombicola for new-to-nature biosurfactant production

Thibo Van de CraenKarolien MaesSofie LodensSofie De MaeseneireSophie RoelantsWim Soetaert

Rational metabolic engineering of Cupriavidus necator to achieve sustainable biofuel and biopolymer production

Wim HectorsJoana De Melo MartinsSofie De MaeseneireTom DelmulleWim Soetaert

Revision of the sophorolipid biosynthetic pathway in Starmerella bombicola based on new insights in the substrate profile of its lactone esterase

Zhoujian DiaoSophie RoelantsGoedele LuytenJan GoemanIsabel VandenbergheGonzalez Van DriesscheSofie De MaeseneireWim SoetaertBart Devreese

A1 Journal Article in BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS

Synthetic biology approaches for production of biosurfactants with the unconventional yeast Starmerella bombicola

Stijn BovijnJoana De Melo MartinsSophie RoelantsSofie De MaeseneireWim Soetaert

Whole genome-based comparative analysis of the genus Streptomyces reveals many misclassifications

Marieke MispelaereAnne-Sofie De RopCedric HermansSofie De MaeseneireWim SoetaertMaarten De MolPaco Hulpiau

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

2023

Advancing ambient ionisation mass spectrometry towards at-line microbial fermentation monitoring

Nicolas de FoozMarilyn De GraevePablo VangeenderhuysenKarolien MaesSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

An exploratory in silico comparison of codon harmonization tools

Thomas WillemsWim HectorsJeltien RombautAnne-Sofie De RopStijn GoegebeurTom DelmulleMaarten De MolSofie De MaeseneireWim Soetaert

An exploratory in silico comparison of open-source codon harmonization tools

Thomas WillemsWim HectorsJeltien RombautAnne-Sofie De RopStijn GoegebeurTom DelmulleMaarten De MolSofie De MaeseneireWim Soetaert

A1 Journal Article in MICROBIAL CELL FACTORIES

Comprehensive metabolomics reveals correlation between sophorolipid biosynthesis and autophagy

Sven DierickxMaximilien SouvereynsSophie RoelantsMarilyn De GraeveLieven Van MeulebroekSofie De MaeseneireWim SoetaertLynn Vanhaecke

A1 Journal Article in NEW BIOTECHNOLOGY

Evaluation of long-term fermentation performance with engineered Saccharomyces cerevisiae strains

Maarten De MolVictoria MarcoenIsabelle MarynsNico SnoeckJoeri J. BeauprezSofie De MaeseneireWim Soetaert

A1 Journal Article in FERMENTATION-BASEL

MariClus : your one-stop platform for information on marine natural products, their gene clusters and producing organisms

Cedric HermansMaarten De MolMarieke MispelaereAnne-Sofie De RopJeltien RombautTesneem NusayrRebecca CreamerSofie De MaeseneireWim SoetaertPaco Hulpiau

A1 Journal Article in MARINE DRUGS

SOAPbox : development of a set of advanced molecular parts for the sophorolipid producing yeast Starmerella bombicola

Goedele LuytenSofie LodensElvira BytyqiSofie De MaeseneireSophie RoelantsWim Soetaert

Universal at-line microbial fermentation monitoring through advances in rapid ambient ionisation mass spectrometry-based metabolomics

Nicolas de FoozMarilyn De GraevePablo VangeenderhuysenKarolien MaesSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

2022

A multi-omics study to boost continuous bolaform sophorolipid production

Sven DierickxKarolien MaesSophie RoelantsBeata PomianLieven Van MeulebroekSofie De MaeseneireLynn VanhaeckeWim Soetaert

A1 Journal Article in NEW BIOTECHNOLOGY

Discovery and structure elucidation of novel alkaloids from marine actinobacteria

Jeltien RombautAnne-Sofie De RopThomas WillemsMarilyn De GraeveLynn VanhaeckePaco HulpiauSofie De MaeseneireMaarten De MolWim Soetaert

Finding the metabolic sweet spot : exploring post-transcriptional regulation and pathway balancing in yeast

Yatti De NijsWim SoetaertSofie De Maeseneire

From bumblebee to bioeconomy : recent developments and perspectives for sophorolipid biosynthesis

Sven DierickxMartijn CasteleinJelle RemmeryVeerle De ClercqSofie LodensNiki BaccileSofie De MaeseneireSophie RoelantsWim Soetaert

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Influence of nitrogen source on sophorolipid biosynthesis by Starmerella bombicola

Goedele LuytenElvira BytyqiSofie De MaeseneireSophie RoelantsWim Soetaert

New-to-nature biosurfactant production on waste-based feedstocks through process and strain development

Thibo Van de CraenStijn BovijnKarolien MaesSofie LodensSofie De MaeseneireSophie RoelantsWim Soetaert

Production and purification of bola glucosides by genetically engineered Starmerella bombicola

Goedele LuytenNicolas de FoozJonas Van HemelryckKarolien MaesSofie LodensSofie De MaeseneireSophie RoelantsWim Soetaert

Sustainable production of microbial biosurfactants from 2nd generation feedstocks by strain- and process engineering

Stijn BovijnThibo Van de CraenKarolien MaesSofie LodensSofie De MaeseneireSophie RoelantsWim Soetaert

Valorisation of waste paper hydrolysates through sustainable 1,3-butanediol production by Cupriavidus necator

Wim HectorsSinah TönjesEvelien UitterhaegenSofie De MaeseneireTom DelmulleWim Soetaert

2021

An interdisciplinary-omics study to boost continuous bolaform sophorolipid production

Sven DierickxKarolien MaesSophie RoelantsLieven Van MeulebroekSofie De MaeseneireLynn VanhaeckeWim Soetaert

Elucidation of the natural function of sophorolipids produced by Starmerella bombicola

Veerle De ClercqSophie RoelantsMartijn CasteleinSofie De MaeseneireWim Soetaert

A1 Journal Article in JOURNAL OF FUNGI

Novel alkaloids from marine actinobacteria : discovery and characterization

Anne-Sofie De RopJeltien RombautThomas WillemsMarilyn De GraeveLynn VanhaeckePaco HulpiauSofie De MaeseneireMaarten De MolWim Soetaert

A1 Journal Article in MARINE DRUGS

WASTE2FUNC : lactic acid and biosurfactants sourced from sustainable agricultural and industrial (food) WASTE feedstocks as novel FUNCtional ingredients for consumer products

Sofie LodensSophie RoelantsKarolien MaesNicolas de FoozThibaut DeryckeMuriel DewildeSofie De MaeseneireWim Soetaert

2020

5′ untranslated regions : the next regulatory sequence in yeast synthetic biology

Yatti De NijsSofie De MaeseneireWim Soetaert

A1 Journal Article in BIOLOGICAL REVIEWS

Alkaloids from marine fungi : promising antimicrobials

Thomas WillemsMaarten De MolAleksandar De BruyckerSofie De MaeseneireWim Soetaert

A1 Journal Article in ANTIBIOTICS-BASEL

An interdisciplinary -omics study to boost continuous bolaform sophorolipid production

Sven DierickxKarolien MaesSophie RoelantsLieven Van MeulebroekSofie De MaeseneireLynn VanhaeckeWim Soetaert

Bridging the gap between drug discovery and synthetic biology : an alkaloid case study

Thomas WillemsMaarten De MolJeltien RombautAleksandar De BruyckerSofie De MaeseneireWim Soetaert

Comprehensive study on Escherichia coli genomic expression : does position really matter?

Anke GoormansNico SnoeckHannes DecadtKarel VermeulenGert PetersPieter CoussementDries Van HerpeJoeri J. BeauprezSofie De MaeseneireWim Soetaert

A1 Journal Article in METABOLIC ENGINEERING

From exotics to lab strains : domestication of two sophorolipid producing yeast species

Sofie LodensWim SoetaertSofie De MaeseneireSophie Roelants

Investigation of baker’s yeast production robustness

Maarten De MolWim HectorsVictoria MarcoenSofie De MaeseneireWim Soetaert

Metabolomics meets white biotechnology : interdisciplinary approaches to resolve suboptimal biosurfactant production

Sven DierickxSophie RoelantsLieven Van MeulebroekSofie De MaeseneireWim SoetaertLynn Vanhaecke

Sophorolipids : the natural functions unravelled

Veerle De ClercqSophie RoelantsMartijn CasteleinSofie De MaeseneireWim Soetaert

Unraveling the regulation of sophorolipid biosynthesis in Starmerella bombicola

Sofie LodensSophie RoelantsGoedele LuytenRobin GeysPieter CoussementSofie De MaeseneireWim Soetaert

A1 Journal Article in FEMS YEAST RESEARCH

Unravelling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

Sofie LodensSophie RoelantsKatarzyna CiesielskaRobin GeysEvelien DerynckKarolien MaesFilip PattynLisa Van RenterghemLéopold MottetSven Dierickx et al.

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Unravelling the transcriptional regulation of sophorolipid biosynthesis by Starmerella bombicola

Goedele LuytenSophie RoelantsSofie De MaeseneireBart DevreeseWim Soetaert

2019

A study of different co-localization strategies for the production of flavonoids in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Assessment of new microbial host parameters to improve the transition potential impact from laboratory to industrial scale fermentation

Maarten De MolVictoria MarcoenIsabelle MarynsNico SnoeckSofie De MaeseneireJoeri BeauprezWim Soetaert

Characterization of the yeast Starmerella bombicola for the improved production of lipophilic compounds

Marilyn De GraeveWim SoetaertSophie RoelantsSofie De Maeseneire

Comprehensive study on Escherichia coli genomic expression : does position really matter?

Nico SnoeckAnke GoormansHannes DecadtGert PetersPieter CoussementDries Van HerpeJoeri BeauprezSofie De MaeseneireWim Soetaert

Comprehensive study on Escherichia coli genomic expression : does position really matter?

Anke GoormansNico SnoeckHannes DecadtGert PetersPieter CoussementDries Van HerpeJoeri BeauprezSofie De MaeseneireWim Soetaert

Engineering yeast factories towards improved robustness

Maarten De MolWim SoetaertSofie De Maeseneire

Modulating transcription through development of semi-synthetic yeast core promoters

Thomas DecoeneSofie De MaeseneireMarjan De Mey

A1 Journal Article in PLOS ONE

Production of long-chain hydroxy fatty acids by Starmerella bombicola

Marilyn De GraeveIsabelle Van de VeldeLien SaeyMaarten ChysHanne OortsHümeyra KahrimanStein MinckeChristian StevensSofie De MaeseneireSophie Roelants et al.

A1 Journal Article in FEMS YEAST RESEARCH

Serine integrase recombinational engineering (SIRE) : a versatile toolbox for genome editing

Nico SnoeckMaarten De MolDries Van HerpeAnke GoormansIsabelle MarynsPieter CoussementGert PetersJoeri BeauprezSofie De MaeseneireWim Soetaert

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Unraveling and resolving inefficient glucolipid biosurfactants production through quantitative multiomics analyses of Starmerella bombicola strains

Sofie LodensSophie RoelantsKatarzyna CiesielskaRobin GeysEvelien DerynckKarolien MaesFilip PattynLisa Van RenterghemLéopold MottetSven Dierickx et al.

2018

Challenges in the microbial production of flavonoids

Tom DelmulleSofie De MaeseneireMarjan De Mey

A1 Journal Article in PHYTOCHEMISTRY REVIEWS

Development and application of a molecular toolkit for the biosurfactant chassis organism Starmerella bombicola

Sofie LodensSophie RoelantsKatarzyna CiesielskaRobin GeysPieter CoussementFiip PattynStijn VerweireLien SaeyKaren SaerensBart Devreese et al.

Development and production of tailor-made biosurfactants

Roelants SophieLisa Van RenterghemBernd EveraertEmile RedantKarolien MaesBrecht VanlerbergheSofie De MaeseneireWim Soetaert

Expanding the portfolio of synthetic biology tools in Saccharomyces cerevisiae for the optimization of heterologous production pathways at the transcriptional and translational level

Thomas DecoeneMarjan De MeySofie De Maeseneire

Hidden antibiotics : where to uncover?

Maarten De MolNico SnoeckSofie De MaeseneireWim Soetaert

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Implementation of microbial host parameters to narrow the gap between laboratory and industrial conditions for baker’s yeast

Maarten De MolVictoria MarcoenIsabelle MarynsSofie De MaeseneireJoeri BeauprezWim Soetaert

Increasing uniformity of biosurfactant production in Starmerella bombicola via the expression of chimeric cytochrome P450s

Robin GeysMarilyn De GraeveSofie LodensJeroen Van MalderenChristophe LemmensMargaux De SmetStein MinckeInge Van BogaertChristian StevensSofie De Maeseneire et al.

A2 Journal Article in COLLOIDS AND INTERFACES

Microbial biosurfactants : from lab to market

Sophie RoelantsLisa Van RenterghemKarolien MaesBernd EveraertEmile RedantBrecht VanlerbergheSofie De MaeseneireWim Soetaert

Bookchapter in Microbial biosurfactants and their environmental and industrial applications

Novel microbial host parameters to describe strain robustness and reduce the gap between laboratory and industrial conditions for baker's yeast

Maarten De MolVictoria MarcoenIsabelle MarynsSofie De MaeseneireJoeri BeauprezWim Soetaert

Serine integrase recombinational engineering (SIRE) : a versatile toolbox for genome editing

Nico SnoeckMaarten De MolDries Van HerpePieter CoussementGert PetersSofie De MaeseneireJoeri BeauprezWim Soetaert

Standardization in synthetic biology : an engineering discipline coming of age

Thomas DecoeneBrecht De PaepeJo MaertensPieter CoussementGert PetersSofie De MaeseneireMarjan De Mey

A1 Journal Article in CRITICAL REVIEWS IN BIOTECHNOLOGY

Starmerella bombicola, an industrially relevant, yet fundamentally underexplored yeast

Marilyn De GraeveSofie De MaeseneireSophie RoelantsWim Soetaert

A1 Journal Article in FEMS YEAST RESEARCH

Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Thomas DecoeneGert PetersSofie De MaeseneireMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Transformation of an exotic yeast species into a platform organism : a case study for engineering glycolipid production in the yeast Starmerella bombicola

Sofie LodensMarilyn De GraeveSophie RoelantsSofie De MaeseneireWim Soetaert

Bookchapter in Synthetic biology : methods and protocols

Where to introduce genetic pathways into the genome of Saccharomyces cerevisiae?

Maarten De MolVictoria MarcoenIsabelle MarynsSofie De MaeseneireJoeri BeauprezWim Soetaert

Yeast organelle engineering : a flavonoid case-study

Tom DelmulleSofie De MaeseneireMarjan De Mey

2017

Co-localization of enzymes for improved production of flavonoids in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Comparative lipid analysis of the bio-surfactants producing yeast Starmerella bombicola

Marilyn De GraeveSophie RoelantsSofie De MaeseneireInge Van BogaertWim Soetaert

Development and application of a molecular toolkit for the biosurfactant chassis organism Starmerella bombicola

Sofie LodensSophie RoelantsKatarzyna CiesielskaRobin GeysPieter CoussementFilip PattynStijn VerweireLien SaeyKaren SaerensBart Devreese et al.

Development of an autonomous replicating plasmid for Starmerella bombicola

Marilyn De GraeveSophie RoelantsSofie De MaeseneireWim Soetaert

Optimizing a protocol for protoplast fusion of Saccharomyces cerevisiae with highly osmophilic yeasts

Veerle De ClercqSofie De MaeseneireBart DevreeseWim Soetaert

RNA stability engineering as a new synthetic biology tool in Saccharomyces cerevisiae

Yatti De NijsSofie De MaeseneireWim Soetaert

Serine integrases as a toolbox for genome editing

Nico SnoeckMaarten De MolDries Van HerpeSofie De MaeseneireJoeri BeauprezWim Soetaert

Towards predictable 5’-UTRs in Saccharomyces cerevisiae

Thomas DecoeneGert PetersSofie De MaeseneireMarjan De Mey

2016

An orthogonal transcription system for Saccharomyces cerevisiae

Maarten De MolVeerle De ClercqSofie De MaeseneireJoeri BeauprezWim Soetaert

Engineering transcription in S. cerevisiae through random assembly of an UAS library

Thomas DecoeneNathalie CuypersMarjan De MeySofie De Maeseneire

High yield 1,3-propanediol production by rational engineering of the 3-hydroxypropionaldehyde bottleneck in Citrobacter werkmanii

Veerle MaervoetSofie De MaeseneireFatma Gizem AvcıJoeri BeauprezWim SoetaertMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Producing Pseudohyphozyma bogoriensis sophorolipids with Starmerella bombicola

Sofie LodensSofie De MaeseneireSilke ClausRobin GeysSophie RoelantsInge Van BogaertWim Soetaert

Protein expression modulation in S. cerevisiae through random assembly of an UAS library

Thomas DecoeneNathalie CuypersMarjan De MeySofie De Maeseneire

Synthetic protein scaffolds for flavonoid production in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Synthetic protein scaffolds for flavonoid production in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

The use of auxotrophic selection markers in the yeast Starmerella bombicola

Isabelle Van de VeldeInge Van BogaertSofie De MaeseneireWim Soetaert

Towards the industrialization of new biosurfactants: biotechnological opportunities for the lactone esterase gene from Starmerella bombicola

Sophie RoelantsKatarzyna CiesielskaSofie De MaeseneireHelena MoensBernd EveraertStijn VerweireQuenten DenonBrecht VanlerbergheInge Van BogaertPaul Van der Meeren et al.

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

2015

Directional multipart in vivo assembly and genome integration using Saccharomyces cerevisiae

Maarten De MolSofie De MaeseneireJoeri BeauprezWim Soetaert

Elucidation of the biochemical pathway for detergent production in the yeast Rhodotorula bogoriensis

Sofie LodensSofie De MaeseneireSophie RoelantsInge Van BogaertWim Soetaert

Elucidation of the biochemical pathway for detergent production in the yeast Rhodotorula bogoriensis

Sofie LodensSofie De MaeseneireSophie RoelantsRobin GeysInge Van BogaertWim Soetaert

Engineering eukaryotic transcription in yeast: towards the minimal core promoter

Thomas DecoeneMarjan De MeySofie De Maeseneire

2014

1,3-propanediol production with Citrobacter werkmanii DSM17579 : effect of a dhaD knock-out

Veerle MaervoetSofie De MaeseneireFatma Gizem AvcıJoeri BeauprezWim SoetaertMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

A balancing act: building the aurone pathway in Saccharomyces cerevisiae

Thomas DecoeneMarjan De MeySofie De Maeseneire

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas DecoeneMarjan De MeySofie De Maeseneire

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas DecoeneMarjan De MeySofie De Maeseneire

Biosurfactant gene clusters in eukaryotes: regulation and biotechnological potential

Sophie RoelantsSofie De MaeseneireKatarzyna CiesielskaInge Van BogaertWim Soetaert

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic engineering @ Inbio.be : platform tools and technologies for the production of complex metabolites

Sofie De MaeseneireJo MaertensMarjan De Mey

Promotor screening with reporter proteins for the yeast Starmerella bombicola

Robin GeysSophie RoelantsSofie De MaeseneireWim Soetaert

Unraveling the dha cluster in Citrobacter werkmanii: comparative genomic analysis of bacterial 1,3-propanediol biosynthesis clusters

Veerle MaervoetSofie De MaeseneireWim SoetaertMarjan De Mey

A1 Journal Article in BIOPROCESS AND BIOSYSTEMS ENGINEERING

2013

Candida bombicola as a platform organism for the production of tailor-made biomolecules

Sophie RoelantsKaren SaerensThibaut DeryckeBing LiYao-Cheng LinYves Van de PeerSofie De MaeseneireInge Van BogaertWim Soetaert

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Library construction in Pichia pastoris for engineering proteins

Magali TangheBarbara DanneelsSofie De MaeseneireTom Desmet

2012

Citrobacter werkmanii, a new candidate for the production of 1,3-propanediol: strain selection and carbon source optimization

Veerle MaervoetJoeri BeauprezSofie De MaeseneireWim SoetaertMarjan De Mey

A1 Journal Article in GREEN CHEMISTRY

Comparison of colony PCR methods for yeast

Sofie De MaeseneireWim SoetaertMarjan De Mey

Development of a reporter system for the platform organism Candida bombicola

Sofie De MaeseneireSophie RoelantsLien SaeyKrystle De PreesterInge Van BogaertWim Soetaert

In vivo production of specialty carbohydrates: a metabolic engineering and synthetic biology approach

Joeri BeauprezJo MaertensGaspard LequeuxSofie De MaeseneireHendrik WaegemanPieter CoussementFrederik De BruynMarjan De MeyWim Soetaert

Monitoring the intracellular pH of Zygosaccharomyces bailii by green fluorescent protein

Trung Diem Trang DangSofie De MaeseneireBaoyu ZhangWinnok De VosAndreja RajkovicAn VermeulenJF Van ImpeFrank Devlieghere

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

2011

Enhancing the microbial conversion of glycerol to 1,3-propanediol using metabolic engineering

Veerle MaervoetMarjan De MeyJoeri BeauprezSofie De MaeseneireWim Soetaert

A1 Journal Article in ORGANIC PROCESS RESEARCH & DEVELOPMENT

2009

Exopolysaccharides from yeasts and (yeast-like) fungi

Erick VandammeSofie De MaeseneireInge Van Bogaert

Extracellular polysaccharides produced by yeasts and yeast-like fungi

Inge Van BogaertSofie De MaeseneireErick Vandamme

Bookchapter in Diversity and potential biotechnological applications of yeasts

2008

Cloning and characterisation of the glyceraldehyde 3-phosphate dehydrogenase gene of Candida bombicola and use of its promoter

Inge Van BogaertSofie De MaeseneireDirk DevelterWim SoetaertErick Vandamme

A1 Journal Article in JOURNAL OF INDUSTRIAL MICROBIOLOGY AND BIOTECHNOLOGY

Cloning and characterization of the glyceraldehyde-3-phosphate dehydrogenase gene and the use of its promoter for expression in Myrothecium gramineum, a novel expression host

Sofie De MaeseneireThierry DauvrinJean-Luc JonniauxInge Van BogaertWim SoetaertErick Vandamme

A1 Journal Article in FEMS MICROBIOLOGY LETTERS

Development of a transformation and selection system for the glycolipid-producing yeast Candida bombicola

Inge Van BogaertSofie De MaeseneireDirk DevelterWim SoetaertErick Vandamme

A1 Journal Article in YEAST

2007

Cloning, characterization and functionality of the orotidine-5 '-phosphate decarboxylase gene (URA3) of the glycolipid-producing yeast Candida bombicola

Inge Van BogaertSofie De MaeseneireWouter De SchamphelaireDirk DevelterWim SoetaertErick Vandamme

A1 Journal Article in YEAST

Development of a selection system for the detection of L-ribose isomerase expressing mutants of Escherichia coli

Cassandra De MuynckJef Van der BorghtMarjan De MeySofie De MaeseneireInge Van BogaertJoeri BeauprezWim SoetaertErick Vandamme

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Exopolysaccharides from yeasts and (yeast-like) fungi

Erick VandammeSofie De MaeseneireInge Van Bogaert

Minimizing acetate formation in E. coli fermentations

Marjan De MeySofie De MaeseneireWim SoetaertErick Vandamme

A1 Journal Article in JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Myrothecium gramineum as a novel fungal expression host

Sofie De MaeseneireE VandammeWim Soetaert

Rapid isolation of fungal genomic DNA suitable for long distance PCR

Sofie De MaeseneireInge Van BogaertT DauvrinWim SoetaertErick Vandamme

A1 Journal Article in BIOTECHNOLOGY LETTERS

2006

Cloning, sequence analysis and heterologous expression of the Myrothecium gramineum orotidine-5'-monophosphate decarboxylase gene

Sofie De MaeseneireManu De GroeveThierry DauvrinMarjan De MeyWim SoetaertErick Vandamme

A1 Journal Article in FEMS MICROBIOLOGY LETTERS

Comparison of DNA and RNA quantification methods suitable for parameter estimation in metabolic modeling of microorganisms

Marjan De MeyGaspard LequeuxJo MaertensSofie De MaeseneireWim SoetaertErick Vandamme

A1 Journal Article in ANALYTICAL BIOCHEMISTRY

Metabolic characterisation of E. coli citrate synthase and phosphoenolpyruvate carboxylase mutants in aerobic cultures

Sofie De MaeseneireMarjan De MeySofie VandedrinckErick Vandamme

A1 Journal Article in BIOTECHNOLOGY LETTERS

Transformation of Aspergillus nidulans using the orotidine monophosphate decarboxylase gene of Myrothecium gramineum

Sofie De MaeseneireManu De GroeveT DAUVRINWim SoetaertErick Vandamme

2005

Cloning and characterization of the NADPH-cytochrome P450 reductase gene of Candida bombicola

Inge Van BogaertSofie De MaeseneireErick VandammeWim Soetaert

Cloning and partial sequencing of the NADPH-cytochrome P450 reductase gene of Candida bombicola

Inge Van BogaertSofie De MaeseneireErick VandammeWim Soetaert

Cloning and Sequence Analysis of the OMP-Decarboxylase Gene of Myrothecium gramineum

Sofie De MaeseneireMarjan De MeyManu De GroeveT DAUVRINWim SoetaertErick Vandamme

Comparison of methods for nucleic acid quantitation

Marjan De MeySofie De MaeseneireJoeri BeauprezKatja Van NieulandWim SoetaertErick Vandamme

Comparison of rapid extraction methods for high quality fungal DNA for PCR-applications

Sofie De MaeseneireMarjan De MeyManu De GroeveT DAUVRINWim SoetaertErick Vandamme

Evaluation of current methods for nucleic acid quantification

Marjan De MeyGaspard LequeuxKatja Van NieulandJoeri BeauprezSofie De MaeseneireJo MaertensWim SoetaertErick Vandamme

Evaluation of different methods for nucleic acids quantification

Marjan De MeySofie De MaeseneireKatja Van NieulandGaspard LequeuxWim SoetaertErick Vandamme

Quantification of nucleic acids

Marjan De MeySofie De MaeseneireJoeri BeauprezKatja Van NieulandWim SoetaertErick Vandamme

The orotidine monophosphate decarboxylase gene of Myrothecium gramineum: cloning and sequence analysis

Sofie De MaeseneireMarjan De MeyManu De GroeveT DauvrinWim SoetaertErick Vandamme

2004

Potential of selected lactic acid bacteria to produce food compatible antifungal metabolites

Cassandra De MuynckAIJ LEROYSofie De MaeseneireF ARNAUTWim SoetaertErick Vandamme

A1 Journal Article in MICROBIOLOGICAL RESEARCH

2002

Construction and enzymatic characterization of E. coli glt A and ppc mutants

S VANDEDRINCKSofie De MaeseneireG DE SCHAMPSE SABLONErick Vandamme

Construction and enzymatic characterization of E. coli GLTA and PPC mutants

Sofie VandedrinckSofie De MaeseneireG. DeschampsE. SablonErick Vandamme

A4 Journal Article in MEDEDELINGEN VAN DE FACULTEIT LANDBOUWKUNDIGE EN TOEGEPASTE BIOLOGISCHE WETENSCHAPPEN, UNIVERSITEIT GENT