Research Explorer

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Researcher

Sander Willems

Awards & Distinctions

21 Results

2022

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Sander WillemsSimon DaledBart Van PuyveldeLaura De ClerckSofie Vande CasteeleFilip Van NieuwerburghDieter DeforceMaarten Dhaenens

2021

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatLaurence Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid Verhelst et al.

A2 Journal Article in JACS AU

2020

Break it to make it : from fragmented information to computational coherency in mass spectrometry based proteomics

Sander WillemsDieter DeforceMaarten Dhaenens

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid VerhelstLaura De ClerckSander WillemsBart Van PuyveldeSimon DaledDieter DeforceMaarten Dhaenens

A2 Journal Article in METHODSX

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van PuyveldeSander WillemsRalf GabrielsSimon DaledLaura De ClerckSofie Vande CasteeleAn StaesFrancis ImpensDieter DeforceLennart Martens et al.

A1 Journal Article in PROTEOMICS

2019

Forensic tri-allelic SNP genotyping using nanopore sequencing

Senne CornelisYannick GansemansAnn-Sophie Vander PlaetsenJana WeymaereSander WillemsDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in FORENSIC SCIENCE INTERNATIONAL-GENETICS

Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

Guido van MierloRené AM DirksLaura De ClerckArie B BrinkmanMichelle HuthSusan L KloetNehmé SaksoukLeonie I KroezeSander WillemsMatthias Farlik et al.

A1 Journal Article in CELL STEM CELL

Proceedings of the EuBIC Winter School 2019

Dominik KopczynskiWout BittremieuxDavid BouyssiéViktoria DorferMarie Locard-PauletBart Van PuyveldeVeit SchwämmleAlessio SoggiuSander WillemsJulian Uszkoreit

Editorial material

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

Laura De ClerckJasin TaelmanMina PopovicSander WillemsMargot Van der JeughtBjörn HeindryckxPetra De SutterHendrik MarksDieter DeforceMaarten Dhaenens

A1 Journal Article in SCIENTIFIC REPORTS

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De ClerckSander WillemsRoberta NoberiniCamilla RestelliniBart Van PuyveldeSimon DaledTiziana BonaldiDieter DeforceMaarten Dhaenens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2018

Estimating the reliability of low-abundant signals and limited replicate measurements through MS2 peak area in SWATH

Franck LimonierSander WillemsGeneviève WaeterloosMyriam SneyersMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Proceedings of the EuBIC developer's meeting 2018

Sander WillemsDavid BouyssiéDieter DeforceViktoria DorferVladimir GorshkovDominik KopczynskiKris LaukensMarie Locard-PauletVeit SchwämmleJulian Uszkoreit et al.

A1 Journal Article in JOURNAL OF PROTEOMICS

Proteins involved in embryo-maternal interaction around the signalling of maternal recognition of pregnancy in the horse

Katrien SmitsSander WillemsKatleen Van SteendamMargot Van de VeldeValérie De LangeCyrillus VerversKim RoelsJan GovaereFilip Van NieuwerburghLuc Peelman et al.

A1 Journal Article in SCIENTIFIC REPORTS

2017

Comparison of fractionation proteomics for local SWATH library building

Elisabeth GovaertKatleen Van SteendamSander WillemsLiesbeth VossaertMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Flagging false positives following untargeted LCMS characterization of histone PTM combinations

Sander WillemsMaarten DhaenensElisabeth GovaertLaura De ClerckPaulien MeertChristophe Van NesteFilip Van NieuwerburghDieter Deforce

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proceedings of the EuBIC Winter School 2017

Sander WillemsDavid BouyssieMatthieu DavidMarie Locard-PauletKarl MechtlerVeit SchwammleJulian UszkoreitMarc VaudelViktoria Dorfer

A1 Journal Article in JOURNAL OF PROTEOMICS

RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion

Sander WillemsSenne CornelisYannick GansemansBart BroeckxDieter De ConinckChristophe Van NesteMaarten DhaenensDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in FORENSIC SCIENCE INTERNATIONAL-GENETICS

2016

Extracting histones for the specific purpose of label-free MS

Elisabeth GovaertKatleen Van SteendamEllen ScheerlinckLiesbeth VossaertPaulien MeertMartina StellaSander WillemsLaura De ClerckMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing

Sander WillemsMarie-Alice FraitureDieter DeforceSigrid De KeersmaeckerPhilippe HermanMarc De LooseTom RuttinkFilip Van NieuwerburghNancy Roosens

A1 Journal Article in FOOD CHEMISTRY

Tackling aspecific side reactions during histone propionylation: the promise of reversing overpropionylation

Paulien MeertSebastiaan DierickxElisabeth GovaertLaura De ClerckSander WillemsMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

2015

Next generation sequencing to identify GMO in food and feed products

Sander WillemsMarie-Alice FraitureSigrid De KeersmaeckerNancy Roosens