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Researcher
Ruslan Dmitriev
Profile
Projects
Publications
Activities
Awards & Distinctions
131
Results
2025
Assessing the effect of aberrant FOXG1 expression in neural organoids
Nore Van Loon
Lukas Genbrugge
Emiel Van Wetter
Fynn Maximilian Godefroy
Michael B Vaughan
Lisa Hamerlinck
Lara Colombo
Sebastian Leimbacher
Lies Vantomme
Esperanza Daal
et al.
U
Conference
2025
Assessing the effect of aberrant FOXG1 expression in neural organoids
Nore Van Loon
Lukas Genbrugge
Emiel Van Wetter
Fynn Maximilian Godefroy
Michael B Vaughan
Lisa Hamerlinck
Lara Colombo
Sebastian Leimbacher
Lies Vantomme
Esperanza Daal
et al.
U
Conference
2025
Fluorescence Lifetime Imaging Microscopy (FLIM) visualizes internalization and biological impact of nanoplastics in live intestinal organoids
Irina Okkelman
Hang Zhou
Sergey M. Borisov
Angela Debruyne
Austin E.Y.T. Lefebvre
Marcello Leomil Zoccoler
Linglong Chen
Bert Devriendt
Ruslan Dmitriev
Preprint
2025
Front cover : optoelectronic properties and fluorescence lifetime imaging application of donor‐acceptor dyads derived from 2,6‐dicarboxyBODIPY (Chem. Eur. J. 10/2025)
Aimee Sheehan
Irina Okkelman
Geoffrey Groslambert
Christophe Bucher
Ruslan Dmitriev
Mikhail A. Filatov
Other
2025
Lack of biochemical signalling in GelMA leads to polarity reversion in intestinal organoids independent from mechanoreciprocity
Lenie Vanhove
Thomas Van Gansbeke
Bert Devriendt
Ruben Van der Meeren
Ruslan Dmitriev
Irina Okkelman
A1
Journal Article
in
JOURNAL OF TISSUE ENGINEERING
2025
Optoelectronic properties and fluorescence lifetime imaging application of donor‐acceptor dyads derived from 2,6‐dicarboxyBODIPY
Aimee Sheehan
Irina Okkelman
Geoffrey Groslambert
Christophe Bucher
Ruslan Dmitriev
Mikhail A. Filatov
A1
Journal Article
in
CHEMISTRY-A EUROPEAN JOURNAL
2025
Poly(2-alkyl-2-oxazoline) hydrogels as synthetic matrices for multicellular spheroid and intestinal organoid cultures
Robin Vanhoeijen
Irina Okkelman
Nette Rogier
Tomáš Sedlačík
Daniel Stöbener
Bert Devriendt
Ruslan Dmitriev
Richard Hoogenboom
A1
Journal Article
in
BIOMACROMOLECULES
2025
Volumetric bioprinting of the osteoid niche
Jessie Duquesne
Laurens Parmentier
Edward Vermeersch
Flora Lemaire
Jung Won Seo
Ruslan Dmitriev
Sandra Van Vlierberghe
A1
Journal Article
in
BIOFABRICATION
2025
2024
2D fibrillar osteoid niche mimicry through inclusion of visco-elastic and topographical cues in gelatin-based networks
Laurens Parmentier
Sophie D'Haese
Jessie Duquesne
Fabrice Bray
Louis Van der Meeren
Andre Skirtach
Christian Rolando
Ruslan Dmitriev
Sandra Van Vlierberghe
A1
Journal Article
in
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
2024
Assessing the effect of aberrant FOXG1 expression in neural organoids
Nore Van Loon
Lukas Genbrugge
Emiel Van Wetter
Fynn Maximilian Godefroy
Michael B Vaughan
Lisa Hamerlinck
Lara Colombo
Sebastian Leimbacher
Lies Vantomme
Esperanza Daal
et al.
U
Conference
2024
Assessing the effect of aberrant FOXG1 expression in neural organoids
Nore Van Loon
Lukas Genbrugge
Emiel Van Wetter
Fynn Maximilian Godefroy
Michael B Vaughan
Lisa Hamerlinck
Lara Colombo
Sebastian Leimbacher
Lies Vantomme
Esperanza Daal
et al.
U
Conference
2024
Bottom‐up extrusion‐based biofabrication of the osteoid niche
Laurens Parmentier
Sophie D'Haese
Nathan Carpentier
Ruslan Dmitriev
Sandra Van Vlierberghe
A1
Journal Article
in
MACROMOLECULAR BIOSCIENCE
2024
DMT1-dependent endosome-mitochondria interactions regulate mitochondrial iron translocation and metastatic outgrowth
Jonathan Barra
Isaiah Crosbourne
Cassandra L. Roberge
Ramon Bossardi-Ramos
Janine S. A. Warren
Kailie Matteson
Ling Wang
Frances Jourd’heuil
Sergey M. Borisov
Erin Bresnahan
et al.
A1
Journal Article
in
ONCOGENE
2024
In Vivo fluorescence lifetime imaging : added value for tumor imaging and importance of fluorophore selection
Simone Janssen
Thomas Van den Dries
Marcus Stroet
Sevada Sahakian
Thomas Lapauw
Irina Okkelman
Ruslan Dmitriev
Maarten Kuijk
Hans Ingelberts
Sophie Hernot
C3
Conference
2024
Live microscopy of multicellular spheroids with the multimodal near-infrared nanoparticles reveals differences in oxygenation gradients
Angela Debruyne
Irina Okkelman
Nina Heymans
Cláudio Pinheiro
An Hendrix
Max Nobis
Sergey M. Borisov
Ruslan Dmitriev
A1
Journal Article
in
ACS NANO
2024
Mimicking the bone extracellular matrix through a calcium phosphate-containing thiol–ene cross-linked gelatin composite
Laurens Parmentier
Sophie D'Haese
Louis Van der Meeren
Anna Szabó
Andre Skirtach
Ruslan Dmitriev
Janis Locs
Sandra Van Vlierberghe
A1
Journal Article
in
BIOMACROMOLECULES
2024
Navigating the fate of intestinal epithelial cells in the world of nanoplastic pollution via Fluorescence Lifetime Imaging Microscopy (FLIM)
Irina Okkelman
Bert Devriendt
Ruslan Dmitriev
C3
Conference
2024
Oxygenation gradients in multicellular spheroids : are they always as expected?
Angela Debruyne
Irina Okkelman
Sergey M. Borisov
Ruslan Dmitriev
C3
Conference
2024
Production and multi-parameter live cell fluorescence lifetime imaging microscopy (FLIM) of multicellular spheroids
Angela Debruyne
Gabriele Ferrari
Hang Zhou
Nore Van Loon
Nina Heymans
Irina Okkelman
Ruslan Dmitriev
A1
Journal Article
in
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
2024
ThymoSpheres culture : a model to study human polyclonal unconventional T cells
Lore Billiet
Hanne Jansen
Melissa Pille
Lena Boehme
Guillem Sanchez Sanchez
Laurenz De Cock
Glenn Goetgeluk
Eva Pascal
Stijn De Munter
Lucas Deseins
et al.
A1
Journal Article
in
EUROPEAN JOURNAL OF IMMUNOLOGY
2024
Tunable self-referenced molecular thermometers via manipulation of dual emission in platinum(II) pyridinedipyrrolide complexes
Andreas Russegger
Susanne M. Fischer
Angela Debruyne
Helmar Wiltsche
A. Daniel Boese
Ruslan Dmitriev
Sergey M. Borisov
A1
Journal Article
in
ACS APPLIED MATERIALS & INTERFACES
2024
Unveiling the mystery of the TIE receptors in podocytes
Iulia-Aneta Dénes
Ward De Spiegelaere
Pieter Cornillie
Ruslan Dmitriev
Dissertation
2024
2023
A comprehensive comparison of different seeding densities and the use of microscaffolds to establish a reproducible protocol for unguided neural organoid differentiation
Nore Van Loon
Michael B Vaughan
Ruslan Dmitriev
Sarah Vergult
C3
Conference
2023
Balance between the cell viability and death in 3D
Angela Debruyne
Irina Okkelman
Ruslan Dmitriev
A1
Journal Article
in
SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY
2023
Bright and photostable TADF‐emitting zirconium(IV) pyridinedipyrrolide complexes : efficient dyes for decay time‐based temperature sensing and imaging
Andreas Russegger
Angela Debruyne
Daniel Carvajal Berrio
Stefanie Fuchs
Julia Marzi
Katja Schenke‐Layland
Ruslan Dmitriev
Sergey M. Borisov
A1
Journal Article
in
ADVANCED OPTICAL MATERIALS
2023
Effect of molar mass and alkyl chain length on the surface properties and biocompatibility of poly(alkylene terephthalate)s for potential cardiovascular applications
Lenny Van Daele
Babs Van de Voorde
Robin Colenbier
Lobke De Vos
Laurens Parmentier
Louis Van der Meeren
Andre Skirtach
Ruslan Dmitriev
Peter Dubruel
Sandra Van Vlierberghe
A1
Journal Article
in
JOURNAL OF MATERIALS CHEMISTRY B
2023
Engineering vascularization in bone tissue engineering scaffolds through volumetric bioprinting
Jessie Duquesne
Laurens Parmentier
Ruslan Dmitriev
Sandra Van Vlierberghe
C3
Conference
2023
Fluorescence intensity and Fluorescence Lifetime Imaging Microscopies (FLIM) of cell differentiation in the small intestinal organoids using cholera toxin
Irina Okkelman
Ruslan Dmitriev
Bookchapter
in
Intestinal differentiated cells : methods and protocols
2023
Live microscopy of multicellular spheroids with the multi-modal near-infrared nanoparticles reveals differences in oxygenation gradients
Angela Debruyne
Irina Okkelman
Nina Heymans
Max Nobis
Sergey M. Borisov
Ruslan Dmitriev
Preprint
2023
Probing organoid metabolism using fluorescence lifetime imaging microscopy (FLIM) : the next frontier of drug discovery and disease understanding
Margarida Barroso
Michael G. Monaghan
Raluca Niesner
Ruslan Dmitriev
A1
Journal Article
in
ADVANCED DRUG DELIVERY REVIEWS
2023
Probing tumor spheroid hypoxia using red/near-infrared ratiometric O2-sensitive nanoparticles
Angela Debruyne
Irina Okkelman
Sergey Borisov
Ruslan Dmitriev
C3
Conference
2023
Role of preconditioning with oxygen and glucose deprivation in promoting differentiation of dental pulp stem cells in 3D culture
Irina Okkelman
Winter Vandenberghe
Ruslan Dmitriev
C3
Conference
2023
TIE2 receptor localization in glomerular podocytes using super resolution microscopy and fluorescence lifetime imaging microscopy
Iulia-Aneta Dénes
Irina Okkelman
Herlinde De Keersmaecker
Ruslan Dmitriev
Ward De Spiegelaere
C3
Conference
2023
2022
Affordable oxygen microscopy-assisted biofabrication of multicellular spheroids
Irina Okkelman
Chris Vercruysse
Alina V. Kondrashina
Sergey M. Borisov
Ruslan Dmitriev
A1
Journal Article
in
JOVE-JOURNAL OF VISUALIZED EXPERIMENTS
2022
Electrospinning of poly(decamethylene terephthalate) to support vascular graft applications
Babs Van de Voorde
Berna Şensu
Lobke De Vos
Robin Colenbier
Havva Başkan
Jozefien Geltmeyer
Laurens Parmentier
Lenny Van Daele
Ruslan Dmitriev
Lincy Pyl
et al.
A1
Journal Article
in
EUROPEAN POLYMER JOURNAL
2022
Intracellular label-free detection of mesenchymal stem cell metabolism within a perivascular niche-on-a-chip
Simone Perottoni
Nuno G. Neto
Cesare di Nitto
Ruslan Dmitriev
Manuela T. Raimondi
Michael G. Monaghan
C3
Conference
2022
Poly(alkylene terephthalate)s for cardiovascular applications : effect of molar mass and alkyl chain length on surface properties and biocompatibility
Lenny Van Daele
Babs Van de Voorde
Lobke De Vos
Robin Colenbier
Laurens Parmentier
Louis Van der Meeren
Andre Skirtach
Ruslan Dmitriev
Sandra Van Vlierberghe
Peter Dubruel
C3
Conference
2022
2021
Intracellular label-free detection of mesenchymal stem cell metabolism within a perivascular niche-on-a-chip
Simone Perottoni
Nuno G Neto
Cesare di Nitto
Ruslan Dmitriev
Manuela Teresa
Michael Monaghan
A1
Journal Article
in
LAB ON A CHIP
2021
Luminescence lifetime imaging of three-dimensional biological objects
Ruslan Dmitriev
Xavier Intes
Margarida M. Barroso
A1
Journal Article
in
JOURNAL OF CELL SCIENCE
2021
MISpheroID : a knowledgebase and transparency tool for minimum information in spheroid identity
Arne Peirsman
Eva Blondeel
Tasdiq Ahmed
Jasper Anckaert
Dominique Audenaert
Tom Boterberg
Krisztina Buzas
Neil Carragher
Gastone Castellani
Flávia Castro
et al.
A1
Journal Article
in
NATURE METHODS
2021
2020
A deeper understanding of intestinal organoid metabolism revealed by combining fluorescence lifetime imaging microscopy (FLIM) and extracellular flux analyses
Irina A. Okkelman
Nuno Neto
Dmitri B. Papkovsky
Michael G. Monaghan
Ruslan Dmitriev
A1
Journal Article
in
REDOX BIOLOGY
2020
Disruption of hypoxia-inducible fatty acid binding protein 7 induces beige fat-like differentiation and thermogenesis in breast cancer cells
Masahiro Kawashima
Karim Bensaad
Christos E. Zois
Alessandro Barberis
Esther Bridges
Simon Wigfield
Christoffer Lagerholm
Ruslan Dmitriev
Mariko Tokiwa
Masakazu Toi
et al.
A1
Journal Article
in
CANCER & METABOLISM
2020
Disruption of hypoxia-inducible fatty acid binding protein 7 induces beige fat-like differentiation and thermogenesis in breast cancer cells (vol 8, 13, 2020)
Masahiro Kawashima
Karim Bensaad
Christos E. Zois
Alessandro Barberis
Esther Bridges
Simon Wigfield
Christoffer Lagerholm
Ruslan Dmitriev
Mariko Tokiwa
Masakazu Toi
et al.
Correction
2020
Estimation of the mitochondrial membrane potential using fluorescence lifetime imaging microscopy
IrMa A. Okkelman
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
CYTOMETRY PART A
2020
Evaluation of Ebselen-azadioxatriangulenium as redox-sensitive fluorescent intracellular probe and as indicator within a planar redox optode
Klaus Koren
Nina Katharina Gravesen Salinas
Marco Santella
Maria Mosshammer
Marie-Caroline Mueller
Ruslan Dmitriev
Sergey M. Borisov
Michael Kuhl
Bo W. Laursen
A1
Journal Article
in
DYES AND PIGMENTS
2020
Extracellular Ca2+-sensing fluorescent protein biosensor based on a collagen-binding domain
Irina A. Okkelman
Ryan McGarrigle
Shane O’Carroll
Daniel Carvajal Berrio
Katja Schenke-Layland
James Hynes
Ruslan Dmitriev
A2
Journal Article
in
ACS APPLIED BIO MATERIALS
2020
Fatty acid binding protein 7 regulates beige fat-like differentiation of breast cancer cells and thermogenesis
Masahiro Kawashima
Karim Bensaad
Christos Zois
Alessandro Barberis
Esther Bridges
Christoffer Lagerholm
Ruslan Dmitriev
Masakazu Toi
Dmitri B. Papkovsky
Francesca Buffa
et al.
C3
Conference
2020
Investigating the role of SCO2 in the metabolic adaptation of cancer cells
Alexandre V. Zhdanov
Oro Uchenunu
Nadezda A. Brazhe
Evelina Nikelshparg
Dmitry E. Andreev
Ruslan Dmitriev
Olga V. Sosnovtseva
Ivan Topisirovic
Dmitri B. Papkovsky
C3
Conference
2020
Multi-parameter fluorescence lifetime imaging microscopy (FLIM) for imaging metabolism in the intestinal organoids model
Ruslan Dmitriev
Irina Okkelman
C3
Conference
2020
Multiparametric optical bioimaging reveals the fate of epoxy crosslinked biomeshes in the mouse subcutaneous implantation model
Vadim Elagin
Daria Kuznetsova
Ekaterina Grebenik
Denis A. Zolotov
Leonid Istranov
Tatiana Zharikova
Elena Istranova
Anastasia Polozova
Dmitry Reunov
Alexandr Kurkov
et al.
A1
Journal Article
in
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
2020
2019
Background-free fluorescence-decay-time sensing and imaging of PH with highly photostable diazaoxotriangulenium dyes
Irene Dalfen
Ruslan Dmitriev
Gerhard Holst
Ingo Klimant
Sergey M. Borisov
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2019
Chemical cross-linking of xenopericardial biomeshes : a bottom-up study of structural and functional correlations
Ekaterina A. Grebenik
Leonid P. Istranov
Elena V. Istranova
Semyon N. Churbanov
Boris S. Shavkuta
Ruslan Dmitriev
Nadezhda N. Veryasova
Svetlana L. Kotova
Alexander V. Kurkov
Anatoly B. Shekhter
et al.
A1
Journal Article
in
XENOTRANSPLANTATION
2019
2018
Cellulose-based scaffolds for fluorescence lifetime imaging-assisted tissue engineering
Neil O'Donnell
Irina Okkelman
Peter Timashev
Tatyana I. Gromovykh
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
ACTA BIOMATERIALIA
2018
Hybrid biosensing cellulose-based scaffolds for imaging-assisted tissue engineering
Neil O'Donnell
Irina A. Okkelman
Shannen A. Ruane
Peter Timashev
Tatyana I. Gromovykh
Ruslan Dmitriev
C3
Conference
2018
Hydrogel-assisted neuroregeneration approaches towards brain injury therapy : a state-of-the-art review
Vladimir A. Kornev
Ekaterina A. Grebenik
Anna B. Solovieva
Ruslan Dmitriev
Peter S. Timashev
A1
Journal Article
in
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
2018
Imaging of oxygen and hypoxia in cell and tissue samples
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2018
Nanoparticle-based fluoroionophore for analysis of potassium ion dynamics in 3D tissue models and in vivo
Bernhard J. Mueller
Alexander V. Zhdanov
Sergey M. Borisov
Tara Foley
Irina Okkelman
Vassiliy Tsytsarev
Qinggong Tang
Reha S. Erzurumlu
Yu Chen
Haijiang Zhang
et al.
A1
Journal Article
in
ADVANCED FUNCTIONAL MATERIALS
2018
New biosensors for metabolic imaging
Neil O'Donnell
Ruslan Dmitriev
Dmitri Papkovsky
Dissertation
2018
Potassium-sensitive nanoparticles for imaging neural tissues in vitro and in vivo
Ruslan Dmitriev
B. J. Mueller
A. V. Zhdanov
S. M. Borisov
V. Tsytsarev
C3
Conference
2018
Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response
Gary Loughran
Irwin Jungreis
Ioanna Tzani
Michael Power
Ruslan Dmitriev
Ivaylo P. Ivanov
Manolis Kellis
John F. Atkins
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2018
Versatile biosensing scaffold platform based on fluorescent proteins and cellulose
Ruslan Dmitriev
N. O'Donnell
I. A. Okkelman
P. Timashev
C3
Conference
2018
2017
Fabrication and handling of 3D scaffolds based on polymers and decellularized tissues
Anastasia Shpichka
Anastasia Koroleva
Daria Kuznetsova
Ruslan Dmitriev
Peter Timashev
A1
Journal Article
in
Advances in Experimental Medicine and Biology
2017
In-vitro estimation of O-2 concentrations during corneal cross-linking (CXL) for porcine corneas and collagen type-I gels
Rebecca M. McQuaid
Michael Mrochen
Ruslan Dmitriev
Dmitri Papkovski
Brian Vohnsen
C3
Conference
2017
Live cell FLIM-PLIM microscopy reveals proliferative and metabolic heterogeneity of intestinal organoids
Ruslan Dmitriev
T. Foley
D. B. Papkovsky
I. A. Okkelman
C3
Conference
2017
Live cell imaging of mouse intestinal organoids reveals heterogeneity in their oxygenation
Irina Okkelman
Tara Foley
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
BIOMATERIALS
2017
Live cell microscopy of intestinal organoid oxygenation
Ruslan Dmitriev
Irina A. Okkelman
Tara Foley
Dmitri B. Papkovsky
C3
Conference
2017
Multi-parametric imaging of hypoxia and cell cycle in intestinal organoid culture
Irina A. Okkelman
Tara Foley
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
Advances in Experimental Medicine and Biology
2017
Multi-parametric live cell microscopy of 3D tissue models preface
Ruslan Dmitriev
Editorial material
2017
Quantitative multi-parametric microscopy analysis of live 3D cell models
Ruslan Dmitriev
James Jenkins
Irina A. Okkelman
Neil O'Donnell
C3
Conference
2017
Steering surface topographies of electrospun fibers : understanding the mechanisms
Gokce Yazgan
Ruslan Dmitriev
Vasundhara Tyagi
James Jenkins
Gelu-Marius Rotaru
Markus Rottmar
Rene M. Rossi
Claudio Toncelli
Dmitri B. Papkovsky
Katharina Maniura-Weber
et al.
A1
Journal Article
in
SCIENTIFIC REPORTS
2017
Three-dimensional tissue models and available probes for multi-parametric live cell microscopy : a brief overview
Neil O'Donnell
Ruslan Dmitriev
A1
Journal Article
in
Advances in Experimental Medicine and Biology
2017
2016
Development of advanced 3D tissue models and O2 imaging methodologies
James Jenkins
Ruslan Dmitriev
Dmitri Papkovsky
Dissertation
2016
Evolutionary diversification of the BetaM interactome acquired through co-option of the ATP1B4 gene in placental mammals
Tatyana V. Korneenko
Nikolay B. Pestov
Nisar Ahmad
Irina A. Okkelman
Ruslan Dmitriev
Mikhail I. Shakhparonov
Nikolai N. Modyanov
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
High-resolution analysis of molecular oxygen in mammalian cell models by phosphorescence lifetime imaging microscopy
Ruslan Dmitriev
James Jenkins
Irina A. Okkelman
Dmitri B. Papkovsky
C3
Conference
2016
Metallochelate coupling of phosphorescent Pt-porphyrins to peptides, proteins, and self-assembling protein nanoparticles
Ruslan Dmitriev
Neil O'Donnell
Dmitri B. Papkovsky
A1
Journal Article
in
BIOCONJUGATE CHEMISTRY
2016
Monitoring of O-2 concentrations during Corneal cross-Linking (CXL) by phosphorescence lifetime imaging microscopy (PLIM)
Rebecca M. McQuaid
Michael C. Mrochen
Ruslan Dmitriev
Dmitri Papkovski
Brian Vohnsen
C3
Conference
2016
Sulforhodamine nanothermometer for multiparametric fluorescence lifetime imaging microscopy
James Jenkins
Sergey M. Borisov
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2016
Systematic analysis of the PTEN 5 ' leader identifies a major AUU initiated proteoform
Ioanna Tzani
Ivaylo P. Ivanov
Dmitri E. Andreev
Ruslan Dmitriev
Kellie A. Dean
Pavel V. Baranov
John F. Atkins
Gary Loughran
A1
Journal Article
in
OPEN BIOLOGY
2016
The Ca2+/Mn2+-transporting SPCA2 pump is regulated by oxygen and cell density in colon cancer cells
James Jenkins
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2016
The secretory pathway Ca2+/Mn2+-Atpase SPCA2 regulates Mn2+-dependent cell cycle progression in 3D culture of colon cancer cells
James Jenkins
Ruslan Dmitriev
Dmitri Papkovsky
C3
Conference
2016
Two-acceptor cyanine-based fluorescent indicator for NAD(P)H in tumor cell models
Maksim A. Fomin
Ruslan Dmitriev
James Jenkins
Dmitri B. Papkovsky
Dieter Heindl
Burkhard Koenig
A1
Journal Article
in
ACS SENSORS
2016
Use of fluorescence lifetime imaging microscopy (FLIM) as a timer of cell cycle S phase
Irina A. Okkelman
Ruslan Dmitriev
Tara Foley
Dmitri B. Papkovsky
A1
Journal Article
in
PLOS ONE
2016
2015
Imaging of oxygenation in 3D tissue models with multi-modal phosphorescent probes
Dmitri B. Papkovsky
Ruslan Dmitriev
Sergei Borisov
P1
Conference
2015
Imaging oxygen in neural cell and tissue models by means of anionic cell-permeable phosphorescent nanoparticles
Ruslan Dmitriev
Sergey M. Borisov
Alina V. Kondrashina
Janelle M. P. Pakan
Ujval Anilkumar
Jochen H. M. Prehn
Alexander V. Zhdanov
Kieran W. McDermott
Ingo Klimant
Dmitri B. Papkovsky
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2015
In vitro ischemia decreases histone H4K16 acetylation in neural cells
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
FEBS LETTERS
2015
Intracellular probes for imaging oxygen concentration : how good are they?
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
METHODS AND APPLICATIONS IN FLUORESCENCE
2015
LOXL2 expression in HCT116 cells under normoxia is regulated by ROS and HIF signaling
Irina Okkelman
Ruslan Dmitriev
Alexander Zhdanov
Dmitri Papkovsky
C3
Conference
2015
Luminescence lifetime imaging microscopy for analysis of oxygen in the cancer cell
Ruslan Dmitriev
C3
Conference
2015
Multi-parametric imaging of tumor spheroids with ultra-bright and tunable nanoparticle O-2 probes
Ruslan Dmitriev
Sergey M. Borisov
James Jenkins
Dmitri B. Papkovsky
P1
Conference
2015
Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes
Dmitry E. Andreev
Patrick B. F. O'Connor
Alexander V. Zhdanov
Ruslan Dmitriev
Ivan N. Shatsky
Dmitri B. Papkovsky
Pavel V. Baranov
A1
Journal Article
in
GENOME BIOLOGY
2015
Oxygen-sensing scaffolds for 3-dimensional cell and tissue culture
James Jenkins
Ruslan Dmitriev
Karl Morten
Kieran W. McDermott
Dmitri B. Papkovsky
A1
Journal Article
in
ACTA BIOMATERIALIA
2015
Versatile conjugated polymer nanoparticles for high-resolution O-2 imaging in cells and 3D tissue models
Ruslan Dmitriev
Sergey M. Borisov
Heiko Duessmann
Shiwen Sun
Bernhard J. Mueller
Jochen Prehn
Vladimir P. Baklaushev
Ingo Klimant
Dmitri B. Papkovsky
A1
Journal Article
in
ACS NANO
2015
2014
Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling
Alexander V. Zhdanov
Alicia H. C. Waters
Anna V. Golubeva
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS
2014
Comparison of different techniques for monitoring of mammalian cell respiration
Alina Kondrashina
Ruslan Dmitriev
Dmitri Papkovsky
C3
Conference
2014
Imaging of molecular oxygen at subcellular resolution in mammalian cell culture : from 2D to 3D models
Ruslan Dmitriev
Alina Kondrashina
Tara Foley
Dmitri Papkovsky
C3
Conference
2014
Real-time monitoring of oxygenation in cultured organotypic brain slices
Ruslan Dmitriev
Sergey Borisov
Alina Kondrashina
Janelle Pakan
Dmitri Papkovsky
C3
Conference
2014
Small molecule phosphorescent probes for O-2 imaging in 3D tissue models
Ruslan Dmitriev
Alina V. Kondrashina
Klaus Koren
Ingo Klimant
Alexander V. Zhdanov
Janelle M. P. Pakan
Kieran W. McDermott
Dmitri B. Papkovsky
A1
Journal Article
in
BIOMATERIALS SCIENCE
2014
Two distinct nuclear localization signals in mammalian MSL1 regulate its function
Ruslan Dmitriev
Nikolay B. Pestov
Mikhail I. Shakhparonov
Irina A. Okkelman
A1
Journal Article
in
JOURNAL OF CELLULAR BIOCHEMISTRY
2014
pH-sensitive perylene bisimide probes for live cell fluorescence lifetime imaging
D. Aigner
Ruslan Dmitriev
S. M. Borisov
D. B. Papkovsky
I. Klimant
A1
Journal Article
in
JOURNAL OF MATERIALS CHEMISTRY B
2014
2013
3D O-2 imaging in the neuronal spheroids
Ruslan Dmitriev
Alexander V. Zhdanov
Yvonne M. Nolan
Dmitri B. Papkovsky
C3
Conference
2013
Biological detection by optical oxygen sensing
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
CHEMICAL SOCIETY REVIEWS
2013
Chronic hypoxia leads to a glycolytic phenotype and suppressed HIF-2 signaling in PC12 cells
Alexander V. Zhdanov
Ruslan Dmitriev
Anna V. Golubeva
Svetlana A. Gavrilova
Dmitri B. Papkovsky
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
2013
Genome-wide investigation of cellular targets and mode of action of the antifungal bacterial metabolite 2,4-diacetylphloroglucinol in Saccharomyces cerevisiae
Danielle M. Troppens
Ruslan Dmitriev
Dmitri B. Papkovsky
Fergal O'Gara
John P. Morrissey
A1
Journal Article
in
FEMS YEAST RESEARCH
2013
Imaging of neurosphere oxygenation with phosphorescent probes
Ruslan Dmitriev
Alexander V. Zhdanov
Yvonne M. Nolan
Dmitri B. Papkovsky
A1
Journal Article
in
BIOMATERIALS
2013
Insight into oxygenation levels within 3D cell models and its impact on cell metabolism
Dmitri B. Papkovsky
Conn Carey
Karl Morten
Ruslan Dmitriev
James Hynes
C3
Conference
2013
Measurement of cell respiration and oxygenation in standard multichannel biochips using phosphorescent O-2-sensitive probes
Alina V. Kondrashina
Dmitri B. Papkovsky
Ruslan Dmitriev
A1
Journal Article
in
ANALYST
2013
Phosphorescent O-2 imaging probes for use in 3D tissue models
Ruslan Dmitriev
A. V. Kondrashina
A. V. Zhdanov
D. B. Papkovsky
C3
Conference
2013
Phosphorescent nanoparticle based probes for imaging and measurement of cellular oxygen
Alina Kondrashina
Ruslan Dmitriev
Sergey Borisov
Ingo Klimant
Alexander Zhdanov
Dmitri Papkovsky
C3
Conference
2013
2012
A phosphorescent nanoparticle-based probe for sensing and imaging of (intra)cellular oxygen in multiple detection modalities
Alina V. Kondrashina
Ruslan Dmitriev
Sergey M. Borisov
Ingo Klimant
Ian O'Brien
Yvonne M. Nolan
Alexander V. Zhdanov
Dmitri B. Papkovsky
A1
Journal Article
in
ADVANCED FUNCTIONAL MATERIALS
2012
Assessment of cellular oxygen gradients with a panel of phosphorescent oxygen-sensitive probes
Ruslan Dmitriev
Alexander V. Zhdanov
Grzegorz Jasionek
Dmitri B. Papkovsky
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2012
Assessment of intracellular O-2 gradient on a microplate reader
Ruslan Dmitriev
Alexander V. Zhdanov
Greg Jasionek
Dmitri B. Papkovsky
C3
Conference
2012
Availability of key metabolic substrates determines metabolic responses, local oxygenation and HIF-2a stabilization in pheochromocytoma PC12 cells
A. Zhdanov
A. Waters
A. Golubeva
Ruslan Dmitriev
D. Papkovsky
C3
Conference
2012
Bafilomycin A1 activates HIF-dependent signalling in human colon cancer cells via mitochondrial uncoupling
Alexander V. Zhdanov
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
BIOSCIENCE REPORTS
2012
Complexes of irIII-octaethylporphyrin with peptides as probes for sensing cellular O2
Klaus Koren
Ruslan Dmitriev
Sergey M. Borisov
Dmitri B. Papkovsky
Ingo Klimant
A1
Journal Article
in
CHEMBIOCHEM
2012
Histone H4 acetylation at K16 residue and mitochondrial activity in neuronal cells
Ruslan Dmitriev
Alexander V. Zhdanov
Dmitri B. Papkovsky
C3
Conference
2012
Optical probes and techniques for O-2 measurement in live cells and tissue
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2012
Structural evolution and tissue-specific expression of tetrapod-specific second isoform of secretory pathway Ca2+-ATPase
Nikolay B. Pestov
Ruslan Dmitriev
Maria B. Kostina
Tatyana V. Korneenko
Mikhail I. Shakhparonov
Nikolai N. Modyanov
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
2012
2011
Bafilomycin A1 activates respiration of neuronal cells via uncoupling associated with flickering depolarization of mitochondria
Alexander V. Zhdanov
Ruslan Dmitriev
Dmitri B. Papkovsky
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2011
Cell-penetrating conjugates of coproporphyrins with oligoarginine peptides : rational design and application for sensing intracellular O-2
Ruslan Dmitriev
Honorata M. Ropiak
Gelii V. Ponomarev
Dmitri V. Yashunsky
Dmitri B. Papkovsky
A1
Journal Article
in
BIOCONJUGATE CHEMISTRY
2011
Oxygen microscopy and high-throughput analysis of icO(2) by means of cell-penetrating phosphorescent dyes
Ruslan Dmitriev
A. Fercher
A. V. Zhdanov
D. B. Papkovsky
C3
Conference
2011
Rational design and experimental assessment of the new family of intracellular O-2-sensitive probes
Ruslan Dmitriev
Dmitri V. Yashunsky
Honorata M. Ropiak
Alexander V. Zhdanov
Gelii V. Ponomarev
Dmitri B. Papkovsky
C3
Conference
2011
Uncoupling effect of bafilomycin A1 on HIF and cell bioenergetics
Ruslan Dmitriev
Alexander V. Zhdanov
Dmitri B. Papkovsky
C3
Conference
2011
2010
Analysis of cellular function by use of cell-penetrating oxygen sensing probes
Honorata M. Ropiak
Ruslan Dmitriev
Dmitri V. Yashunski
Gelii V. Ponomarev
Alexander V. Zhdanov
Dmitri B. Papkovsky
C3
Conference
2010
Bactenecin 7 peptide fragment as a tool for intracellular delivery of a phosphorescent oxygen sensor
Ruslan Dmitriev
Honorata M. Ropiak
Dmitri V. Yashunsky
Gelii V. Ponomarev
Alexander V. Zhdanov
Dmitri B. Papkovsky
A1
Journal Article
in
FEBS JOURNAL
2010
Intracellular oxygen-sensitive phosphorescent probes based on cell-penetrating peptides
Ruslan Dmitriev
Alexander V. Zhdanov
Gelii V. Ponomarev
Dmitri V. Yashunski
Dmitri B. Papkovsky
A1
Journal Article
in
ANALYTICAL BIOCHEMISTRY
2010
2009
Nuclear transport of protein TTC4 depends on the cell cycle
Ruslan Dmitriev
Irina A. Okkelman
Roman A. Abdulin
Mikhail I. Shakhparonov
Nikolay B. Pestov
A1
Journal Article
in
CELL AND TISSUE RESEARCH
2009
2008
Structure and function of MYST1 histone acetyltransferase in the interactome of animal cells
Ruslan Dmitriev
M. I. Shakhparonov
N. B. Pestov
A1
Journal Article
in
BIOCHEMISTRY-MOSCOW
2008
TTC4 provides a functional link between RASSF1C and DNA primase
Ruslan Dmitriev
Mikhail I. Shakhparonov
Nikolay B. Pestov
C3
Conference
2008
2007
Characterization of hampin/MSL1 as a node in the nuclear interactome
Ruslan Dmitriev
Tatyana V. Korneenko
Alexander A. Bessonov
Mikhail I. Shakhparonov
Nikolai N. Modyanov
Nikolay B. Pestov
A1
Journal Article
in
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS
2007
Identification of novel protein-protein interactions pertinent to regulation of mammalian hampin/MSL1 and histone acetylase MYST1/MOF
Ruslan Dmitriev
Tatyana V. Korneenko
Nikolay B. Pestov
Nikolay N. Modyanov
Mikhail I. Shakhparonov
C3
Conference
2007
2005
A Caenorhabditis elegans mutant lacking functional nicotinamide nucleotide transhydrogenase displays increased sensitivity to oxidative stress
EL Arkblad
S Tuck
NB Pestov
Ruslan Dmitriev
MB Kostina
J Stenvall
M Tranberg
J Rydstrom
A1
Journal Article
in
FREE RADICAL BIOLOGY AND MEDICINE
2005