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Researcher
Ruben Props
Profile
Projects
Publications
Activities
55
Results
2022
Identifying drivers of microbial dynamics in aquaculture : from single-cell technology to metagenomics
Jasmine Heyse
Nico Boon
Tom Defoirdt
Ruben Props
Dissertation
2022
Lignocellulose fermentation products generated by giant panda gut microbiomes depend ultimately on pH rather than portion of bamboo : a preliminary study
Alberto Scoma
Way Cern Khor
Ruben Props
Korneel Rabaey
A1
Journal Article
in
MICROORGANISMS
2022
2021
Computational analysis of microbial flow cytometry data
Peter Rubbens
Ruben Props
A1
Journal Article
in
MSYSTEMS
2021
Cyclical patterns affect microbial dynamics in the water basin of a nuclear research reactor
Ruben Props
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2021
Cytometric fingerprints of gut microbiota predict Crohn's disease state
Peter Rubbens
Ruben Props
Frederiek-Maarten Kerckhof
Nico Boon
Willem Waegeman
A1
Journal Article
in
ISME JOURNAL
2021
PhenoGMM : Gaussian mixture modeling of cytometry data quantifies changes in microbial community structure
Peter Rubbens
Ruben Props
Frederiek-Maarten Kerckhof
Nico Boon
Willem Waegeman
A1
Journal Article
in
MSPHERE
2021
Predicting the presence and abundance of bacterial taxa in environmental communities through flow cytometric fingerprinting
Jasmine Heyse
Peter Rubbens
Willem Waegeman
Nico Boon
Ruben Props
A1
Journal Article
in
MSYSTEMS
2021
Rearing water microbiomes in white leg shrimp (Litopenaeus vannamei) larviculture assemble stochastically and are influenced by the microbiomes of live feed products
Jasmine Heyse
Ruben Props
Tom Defoirdt
Nico Boon
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2021
Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles
Jo De Vrieze
Ruben Props
Lieven Van Meulebroek
Lynn Vanhaecke
Nico Boon
A1
Journal Article
in
WATER RESEARCH
2021
2020
Adaptation and characterization of thermophilic anammox in bioreactors
Tom Vandekerckhove
Ruben Props
Jose Maria Carvajal Arroyo
Nico Boon
Siegfried Vlaeminck
A1
Journal Article
in
WATER RESEARCH
2020
Discriminating bacterial phenotypes at the population and single‐cell level : a comparison of flow cytometry and Raman spectroscopy fingerprinting
Cristina García Timermans
Peter Rubbens
Jasmine Heyse
Frederiek-Maarten Kerckhof
Ruben Props
Andre Skirtach
Willem Waegeman
Nico Boon
A1
Journal Article
in
CYTOMETRY PART A
2020
Flow cytometry for rapid characterisation of microbial community dynamics in waste stabilisation ponds
Ruben Props
A1
Journal Article
in
WATER RESEARCH
2020
Microhabitats are associated with diversity-productivity relationships in freshwater bacterial communities
Ruben Props
A1
Journal Article
in
FEMS MICROBIOLOGY ECOLOGY
2020
Raman microscopy for phenotyping microorganisms
Cristina García Timermans
Nico Boon
Ruben Props
Dissertation
2020
Raman spectroscopy-based measurements of single-cell phenotypic diversity in microbial populations
Cristina García Timermans
Ruben Props
Myrsini Sakarika
Nico Boon
A1
Journal Article
in
MSPHERE
2020
Short-term supplementation of celecoxib-shifted butyrate production on a simulated model of the gut microbial ecosystem and ameliorated in vitro inflammation
Emma Hernandez Sanabria
Marta Calatayud Arroyo
Ruben Props
Tom Van de Wiele
A1
Journal Article
in
NPJ BIOFILMS AND MICROBIOMES
2020
Substrate-dependent fermentation of bamboo in giant panda gut microbiomes : leaf primarily to ethanol and pith to lactate
Alberto Scoma
Way Cern Khor
Marta Coma Bech
Ruben Props
Korneel Rabaey
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2020
2019
Coculturing bacteria leads to reduced phenotypic heterogeneities
Jasmine Heyse
Benjamin Buysschaert
Ruben Props
Peter Rubbens
Andre Skirtach
Willem Waegeman
Nico Boon
A1
Journal Article
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2019
Cyt-Geist : current and future challenges in cytometry : reports of the CYTO 2018 conference workshops
Frederiek-Maarten Kerckhof
Ruben Props
Peter Rubbens
Gert Van Isterdael
A1
Journal Article
in
CYTOMETRY PART A
2019
Fingerprinting microbial communities through flow cytometry and Raman spectroscopy
Cristina García Timermans
Peter Rubbens
Frederiek-Maarten Kerckhof
Ruben Props
Willem Waegeman
Nico Boon
C3
Conference
2019
Fingerprinting microbial communities through flow cytometry and Raman spectroscopy
Cristina García Timermans
Peter Rubbens
Frederiek-Maarten Kerckhof
Ruben Props
Willem Waegeman
Nico Boon
C3
Conference
2019
Gene expansion and positive selection as bacterial adaptations to oligotrophic conditions
Ruben Props
Peter Vandamme
Nico Boon
A1
Journal Article
in
MSPHERE
2019
Granular fermentation enables high rate caproic acid production from solid-free thin stillage
Jose Maria Carvajal Arroyo
Pieter Candry
Ruben Props
Ramon Ganigué
Korneel Rabaey
A1
Journal Article
in
GREEN CHEMISTRY
2019
Predicting microbial biodiversity using flow cytometry and 16S rRNA gene amplicon sequencing
Peter Rubbens
Ruben Props
Frederiek-Maarten Kerckhof
Nico Boon
Willem Waegeman
C3
Conference
2019
Propionate-producing consortium restores antibiotic-induced dysbiosis in a dynamic in vitro model of the human intestinal microbial ecosystem
Racha El Hage
Emma Hernandez Sanabria
Marta Calatayud Arroyo
Ruben Props
Tom Van de Wiele
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2019
Randomized lasso links microbial taxa with aquatic functional groups inferred from flow cytometry
Peter Rubbens
Ruben Props
Nico Boon
Willem Waegeman
A1
Journal Article
in
MSYSTEMS
2019
2018
A data-driven search for functional bacterial populations in aquatic systems using flow cytometry, 16S rRNA gene amplicon sequencing and the Randomized Lasso
Peter Rubbens
Ruben Props
Nico Boon
Willem Waegeman
C1
Conference
2018
Anammox demonstrated in reactors around 50°C, opening up a new path for thermophilic nitrogen removal
Tom Vandekerckhove
Jose Maria Carvajal Arroyo
Ruben Props
Siegfried Vlaeminck
Nico Boon
C3
Conference
2018
Detection of microbial disturbances in a drinking water microbial community through continuous acquisition and advanced analysis of flow cytometry data
Ruben Props
Peter Rubbens
Benjamin Buysschaert
Willem Waegeman
Nico Boon
A1
Journal Article
in
WATER RESEARCH
2018
Drinking water bacterial communities exhibit specific and selective necrotrophic growth
Ioanna Chatzigiannidou
Ruben Props
Nico Boon
A1
Journal Article
in
NPJ CLEAN WATER
2018
Drug-bug crosstalk impacts compositional and functional features of in vitro gut microbial ecosystem
Emma Hernandez Sanabria
Fabian Mermans
Ruben Props
Marta Calatayud Arroyo
Tom Van de Wiele
C3
Conference
2018
Flow cytometric monitoring of bacterioplankton phenotypic diversity predicts high population-specific feeding rates by invasive dreissenid mussels
Ruben Props
Jasmine Heyse
Nico Boon
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2018
Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems
Elham Ehsani
Emma Hernandez Sanabria
Frederiek-Maarten Kerckhof
Ruben Props
Ramiro Vilchez Vargas
Nico Boon
A1
Journal Article
in
SCIENTIFIC REPORTS
2018
Microbial population and community dynamics in natural and managed freshwater systems : from methodology development to mechanistic insights
Ruben Props
Nico Boon
Dissertation
2018
Plant and soil microbe responses to light, warming and nitrogen addition in a temperate forest
Shiyu Ma
Kris Verheyen
Ruben Props
Safaa Wasof
Margot Vanhellemont
Pascal Boeckx
Nico Boon
Pieter De Frenne
A1
Journal Article
in
FUNCTIONAL ECOLOGY
2018
Single-cell bacterial characterization using flow cytometry and Raman spectroscopy
Cristina García Timermans
Peter Rubbens
Frederiek-Maarten Kerckhof
Ruben Props
Willem Waegeman
Nico Boon
C3
Conference
2018
2017
A Clostridium group IV species dominates and suppresses a mixed culture fermentation by tolerance to medium chain fatty acids products
Stephen Andersen
Way Cern Khor
Hugo Roume
Ruben Props
Marta Coma Bech
Korneel Rabaey
A1
Journal Article
in
FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY
2017
Absolute quantification of microbial taxon abundances
Ruben Props
Frederiek-Maarten Kerckhof
Peter Rubbens
Jo De Vrieze
Emma Hernandez Sanabria
Willem Waegeman
Nico Boon
A1
Journal Article
in
ISME JOURNAL
2017
Bacterial necrotrophic growth on dead-biomass in drinking water
Ioanna Chatzigiannidou
Ruben Props
Nico Boon
C3
Conference
2017
Biological recovery of platinum complexes from diluted aqueous streams by axenic cultures
Synthia Maes
Ruben Props
Rebecca De Smet
Frank Vanhaecke
Nico Boon
Tom Hennebel
A1
Journal Article
in
PLOS ONE
2017
Flow cytometric single-cell identification of populations in synthetic bacterial communities
Peter Rubbens
Ruben Props
Nico Boon
Willem Waegeman
A1
Journal Article
in
PLOS ONE
2017
Identifying synthetic communities using flow cytometry and machine learning
Peter Rubbens
Cristina García Timermans
Ruben Props
Nico Boon
Willem Waegeman
C3
Conference
2017
Increased carboxylate production in high-rate activated A-sludge by forward osmosis thickening
Cristina Cagnetta
Arnout D'Haese
Marta Coma Bech
Ruben Props
Benjamin Buysschaert
Arne Verliefde
Korneel Rabaey
A1
Journal Article
in
CHEMICAL ENGINEERING JOURNAL
2017
Initial evenness determines temporal dynamics in synthetic microbial ecosystem
Elham Ehsani
Emma Hernandez Sanabria
Frederiek-Maarten Kerckhof
Ruben Props
Ramiro Vilchez Vargas
Nico Boon
C3
Conference
2017
Laboratory-scale simulation and real-time tracking of a microbial contamination event and subsequent shock-chlorination in drinking water
Ruben Props
Benjamin Buysschaert
Nico Boon
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2017
Reconciliation between operational taxonomic units and species boundaries
Peter Vandamme
Ruben Props
Frederiek-Maarten Kerckhof
Nico Boon
A1
Journal Article
in
FEMS MICROBIOLOGY ECOLOGY
2017
Stripping flow cytometry : how many detectors do we need for bacterial identification?
Peter Rubbens
Ruben Props
Cristina García Timermans
Nico Boon
Willem Waegeman
A1
Journal Article
in
CYTOMETRY PART A
2017
2016
5-Fluorouracil sensitivity varies among oral micro-organisms
Eline Vanlancker
Tom Van de Wiele
Barbara Vanhoecke
Ruben Props
A1
Journal Article
in
JOURNAL OF MEDICAL MICROBIOLOGY
2016
Clustering environmental flow cytometry data by searching density peaks
Peter Rubbens
Willem Waegeman
Ruben Props
Nico Boon
C1
Conference
2016
Identifying synthetic microbial communities by learning in silico communities using flow cytometry
Peter Rubbens
Willem Waegeman
Ruben Props
Nico Boon
C1
Conference
2016
Learning in silico communities to perform flow cytometric identification of synthetic bacterial communities
Peter Rubbens
Ruben Props
Nico Boon
Willem Waegeman
C1
Conference
2016
Measuring the biodiversity of microbial communities by flow cytometry
Ruben Props
Lieven Clement
Nico Boon
A1
Journal Article
in
METHODS IN ECOLOGY AND EVOLUTION
2016
Microbial community abundance vs. activity in anaerobic digestion in relation to salt stress
Jo De Vrieze
Ruben Props
Nico Boon
C1
Conference
2016
Platinum recovery from synthetic extreme environments by halophilic bacteria
Synthia Maes
Ruben Props
Rebecca De Smet
Ramiro Vilchez Vargas
Frank Vanhaecke
Nico Boon
Tom Hennebel
A1
Journal Article
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2016
Presence does not imply activity : DNA and RNA patterns differ in response to salt perturbation in anaerobic digestion
Jo De Vrieze
Ruben Props
Ramiro Vilchez Vargas
A1
Journal Article
in
BIOTECHNOLOGY FOR BIOFUELS
2016