Research Explorer

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Researcher

Riet De Smet

Awards & Distinctions

17 Results

2017

Conservation of nonsense-mediated mRNA decay complex components throughout eukaryotic evolution

Barry CausierZhen LiRiet De SmetJames PB LloydYves Van de PeerBrendan Davies

A1 Journal Article in SCIENTIFIC REPORTS

Coordinated functional divergence of genes after genome duplication in Arabidopsis thaliana

Riet De SmetEhsan SabaghianZhen LiYvan SaeysYves Van de Peer

A1 Journal Article in PLANT CELL

2016

Gene duplicability of core genes is highly consistent across all angiosperms

Zhen LiJonas DefoortSetareh TasdighianSteven MaereYves Van de PeerRiet De Smet

A1 Journal Article in PLANT CELL

Lack of GLYCOLATE OXIDASE1, but not GLYCOLATE OXIDASE2, attenuates the photorespiratory phenotype of CATALASE2-deficient Arabidopsis

Pavel KerchevCezary WaszczakAleksandra LewandowskaPatrick WillemsAlexey ShapiguzovZhen LiSaleh AlseekhPer MühlenbockFrank HoeberichtsJingjing Huang et al.

A1 Journal Article in PLANT PHYSIOLOGY

2015

MarkerMiner 1.0: a new application for phylogenetic marker development using angiosperm transcriptomes

Srikar ChamalaNicolás GarcíaGrant T GoddenVivek KrishnakumarIngrid E Jordon-ThadenRiet De SmetW Brad BerbazukDouglas E SoltisPamela S Soltis

A1 Journal Article in APPLICATIONS IN PLANT SCIENCES

Quantifying expression divergence of duplicated genes with microarrays

Koen Van den BergeRiet De SmetYves Van de PeerLieven Clement

2013

Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants

Riet De SmetKeith L AdamsKlaas VandepoeleMarc Van MontaguSteven MaereYves Van de Peer

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2012

Redundancy and rewiring of genetic networks following genome-wide duplication events

Riet De SmetYves Van de Peer

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

2011

An ensemble biclustering approach for querying gene expression compendia with experimental lists

Riet De SmetKathleen Marchal

A1 Journal Article in BIOINFORMATICS

COLOMBOS : access port for cross-platform bacterial expression compendia

Kristof EngelenQiang FuPieter MeysmanAminael Sánchez-RodríguezRiet De SmetKaren LemmensAna Carolina FierroKathleen Marchal

A1 Journal Article in PLOS ONE

Query-based biclustering of gene expression data using Probabilistic Relational Models

Hui ZhaoLore ClootsTim Van den BulckeYan WuRiet De SmetValerie StormsPieter MeysmanKristof EngelenKathleen Marchal

A1 Journal Article in BMC BIOINFORMATICS

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli

Pieter MeysmanHai Dang ThanhKris LaukensRiet De SmetYan WuKathleen MarchalKristof Engelen

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2010

Advantages and limitations of current network inference methods

Riet De SmetKathleen Marchal

A1 Journal Article in NATURE REVIEWS MICROBIOLOGY

An ensemble method for querying gene expression compendia with experimental lists

Riet De SmetKathleen Marchal

2009

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

Tom MichoelRiet De SmetAnagha JoshiYves Van de PeerKathleen Marchal

A1 Journal Article in BMC Systems Biology

Module networks revisited: computational assessment and prioritization of model predictions

Anagha JoshiRiet De SmetKathleen MarchalYves Van de PeerTom Michoel

A1 Journal Article in BIOINFORMATICS

Reverse-engineering transcriptional modules from gene expression data

Tom MichoelRiet De SmetAnagha JoshiKathleen MarchalYves Van de Peer

A1 Journal Article in Annals of the New York Academy of Sciences