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Researcher
Petra Van Damme
Profile
Projects
Publications
Activities
Awards & Distinctions
130
Results
2024
Distinct dynamics and proximity networks of hub proteins at the prey-invading cell pole in a predatory bacterium
Ophélie Remy
Yoann G. Santin
Veronique Jonckheere
Coralie Tesseur
Jovana Kaljević
Petra Van Damme
Géraldine Laloux
A1
Journal Article
in
JOURNAL OF BACTERIOLOGY
2024
Proteins à la carte : riboproteogenomic exploration of bacterial N-terminal proteoform expression
Igor Fijalkowski
Valdes Snauwaert
Petra Van Damme
A1
Journal Article
in
MBIO
2024
2023
Cataloguing protein complexes in planta using TurboID-catalyzed proximity labeling
Lore Gryffroy
Joren De Ryck
Veronique Jonckheere
Sofie Goormachtig
Alain Goossens
Petra Van Damme
Bookchapter
in
Protein-protein interactions : methods and protocols
2023
Elucidating the tomato protein network exploited by core type 3 effectors from the Ralstonia solanacearum species complex
Joren De Ryck
Sofie Goormachtig
Petra Van Damme
Jane Debode
Dissertation
2023
Expanded in vivo substrate profile of the yeast N-terminal acetyltransferase NatC
Petra Van Damme
Camilla Osberg
Veronique Jonckheere
Nina Glomnes
Kris Gevaert
Thomas Arnesen
Henriette Aksnes
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2023
Exposing the small protein load of bacterial life
Laure Simoens
Igor Fijalkowski
Petra Van Damme
A1
Journal Article
in
FEMS MICROBIOLOGY REVIEWS
2023
From prediction to function : current practices and challenges towards the functional characterization of type III effectors
Joren De Ryck
Petra Van Damme
Sofie Goormachtig
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2023
Gasdermin D independent canonical inflammasome responses cooperate with caspase-8 to establish host defense against gastrointestinal Citrobacter rodentium infection
Elien Eeckhout
Lisa Hamerlinck
Veronique Jonckheere
Petra Van Damme
Geert van Loo
Andy Wullaert
A1
Journal Article
in
CELL DEATH & DISEASE
2023
Identification of plant protein-metabolite interactions by limited proteolysis-coupled mass spectrometry (LiP-MS)
Jhon Jairo Venegas Molina
Petra Van Damme
Alain Goossens
Bookchapter
in
Cell-wide identification of metabolite-protein interactions
2023
Proximity mapping of CCP6 reveals its association with centrosome organization and cilium assembly
Sergi Rodriguez-Calado
Petra Van Damme
Francesc Xavier Avilés
Ana Paula Candiota
Sebastian Tanco
Julia Lorenzo
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2023
Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development
Lore Gryffroy
Evi Ceulemans
Nicolás Manosalva Pérez
Jhon Jairo Venegas Molina
Ana Jaramillo
Savio D. Rodrigues
Liesbeth De Milde
Veronique Jonckheere
Marc Van Montagu
Barbara De Coninck
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2023
Seeking the interspecies crosswalk for filamentous microbe effectors
Naomi Stuer
Petra Van Damme
Sofie Goormachtig
Judith Van Dingenen
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2023
Shift in vacuolar to cytosolic regime of infecting Salmonella from a dual proteome perspective
Ursula Fels
Patrick Willems
Margaux De Meyer
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
PLOS PATHOGENS
2023
Virotrap : trapping protein complexes in virus-like particles
Georgios Moschonas
Margaux De Meyer
Delphine De Sutter
Evy Timmerman
Petra Van Damme
Sven Eyckerman
Bookchapter
in
Mass spectrometry-based proteomics
2023
2022
Hidden in plain sight : challenges in proteomics detection of small ORF-encoded polypeptides
Igor Fijalkowski
Patrick Willems
Veronique Jonckheere
Laure Simoens
Petra Van Damme
A2
Journal Article
in
MICROLIFE
2022
Mapping the protein interaction landscape of T-DNA proteins in tomato hairy root development
Lore Gryffroy
Alain Goossens
Petra Van Damme
Dissertation
2022
Recent advancements in tracking bacterial effector protein translocation
Julie Braet
Dominiek Catteeuw
Petra Van Damme
A1
Journal Article
in
MICROORGANISMS
2022
Selective ribosome profiling reveals a role for SecB in the co-translational inner membrane protein biogenesis
Lena Eismann
Igor Fijalkowski
Carla Verónica Galmozzi
Jiří Koubek
Frank Tippmann
Petra Van Damme
Günter Kramer
A1
Journal Article
in
CELL REPORTS
2022
To new beginnings : riboproteogenomics discovery of N-terminal proteoforms in Arabidopsis thaliana
Patrick Willems
Elvis Ndah
Veronique Jonckheere
Frank Van Breusegem
Petra Van Damme
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2022
2021
Capturing salmonella SspH2 host targets in virus-like particles
Margaux De Meyer
Igor Fijalkowski
Veronique Jonckheere
Delphine De Sutter
Sven Eyckerman
Petra Van Damme
A1
Journal Article
in
FRONTIERS IN MEDICINE
2021
Charting the N-terminal acetylome : a comprehensive map of human NatA substrates
Petra Van Damme
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2021
Mechanisms of congenital heart disease caused by NAA15 haploinsufficiency
Tarsha L. Ward
Warren Tai
Sarah U. Morton
Francis Impens
Petra Van Damme
Delphi Van Haver
Evy Timmerman
Gabriela Venturini
Kehan Zhang
Min Young Jang
et al.
A1
Journal Article
in
CIRCULATION RESEARCH
2021
N-terminal acetyltransferase Naa40p whereabouts put into N-terminal proteoform perspective
Veronique Jonckheere
Petra Van Damme
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2021
Small protein enrichment improves proteomics detection of sORF encoded polypeptides
Igor Fijalkowski
Marlies Peeters
Petra Van Damme
A1
Journal Article
in
FRONTIERS IN GENETICS
2021
Use of hybrid data-dependent and -independent acquisition spectral libraries empowers dual-proteome profiling
Patrick Willems
Ursula Fels
An Staes
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2021
2020
Bacterial genetic engineering by means of recombineering for reverse genetics
Ursula Fels
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2020
Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed
Daria Fijalkowska
Igor Fijalkowski
Patrick Willems
Petra Van Damme
A1
Journal Article
in
FEMS MICROBIOLOGY REVIEWS
2020
Establishment of proximity-dependent biotinylation approaches in different plant model systems
Deepanksha Arora
Nikolaj B. Abel
Chen Liu
Petra Van Damme
Klaas Yperman
Dominique Eeckhout
Lam Dai Vu
Jie Wang
Anna Tornkvist
Francis Impens
et al.
A1
Journal Article
in
PLANT CELL
2020
Keeping in touch with type-III secretion system effectors : mass spectrometry-based proteomics to study effector-host protein-protein interactions
Margaux De Meyer
Joren De Ryck
Sofie Goormachtig
Petra Van Damme
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2020
Lost and found : re-searching and re-scoring proteomics data aids genome annotation and improves proteome coverage
Patrick Willems
Igor Fijalkowski
Petra Van Damme
A1
Journal Article
in
MSYSTEMS
2020
Method optimization for unveiling the proteome landscape of bacterial pathogens in the context of the infected host
Ursula Fels
Petra Van Damme
Kris Gevaert
Dissertation
2020
The proteogenomic hunt for new proteoforms using ribosome profiling
Steven Verbruggen
Wim Van Criekinge
Gerben Menschaert
Petra Van Damme
Dissertation
2020
2019
Ablation of elongation factor 2 kinase enhances heat-shock protein 90 chaperone expression and protects cells under proteotoxic stress
Jianling Xie
Petra Van Damme
Danielle Fang
Christopher G. Proud
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2019
PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
Steven Verbruggen
Elvis Ndah
Wim Van Criekinge
Siegfried Gessulat
Bernhard Kuster
Mathias Wilhelm
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2019
2018
Cell-intrinsic control of interneuron migration drives cortical morphogenesis
Carla G Silva
Elise Peyre
Mohit H Adhikari
Sylvia Tielens
Sebastian Tanco
Petra Van Damme
Lorenza Magno
Nathalie Krusy
Gulistan Agirman
Maria M Magiera
et al.
A1
Journal Article
in
CELL
2018
Complementary use of ribosome profiling and proteomics for mapping the translation landscape
Elvis Ndah
Petra Van Damme
Gerben Menschaert
Lennart Martens
Dissertation
2018
Limitless translation limits translation
Petra Van Damme
Editorial material
2018
N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae
Sylvia Varland
Henriette Aksnes
Fedor Kryuchkov
Francis Impens
Delphi Van Haver
Veronique Jonckheere
Mathias Ziegler
Kris Gevaert
Petra Van Damme
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2018
N-terminal acetylation modulates Bax targeting to mitochondria
Sara Alves
Leire Neiri
Susana Rodrigues Chaves
Selma Vieira
Dário Trindade
Stephen Manon
Veronica Dominguez
Belen Pintado
Veronique Jonckheere
Petra Van Damme
et al.
A1
Journal Article
in
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
2018
Omics assisted N-terminal proteoform and protein expression profiling on methionine aminopeptidase 1 (MetAP1) deletion
Veronique Jonckheere
Daria Fijalkowska
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2018
2017
Identification of carboxypeptidase substrates by C-terminal COFRADIC
Sebastian Tanco
Francesc Xavier Aviles
Kris Gevaert
Julia Lorenzo
Petra Van Damme
Bookchapter
in
Protein terminal profiling : methods and protocols
2017
N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana
Patrick Willems
Elvis Ndah
Veronique Jonckheere
Simon Stael
Adriaan Sticker
Lennart Martens
Frank Van Breusegem
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2017
Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products
Kenneth Verheggen
Pieter-Jan Volders
Pieter Mestdagh
Gerben Menschaert
Petra Van Damme
Kris Gevaert
Lennart Martens
Jo Vandesompele
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2017
Protease substrate profiling by N-terminal COFRADIC
An Staes
Petra Van Damme
Evy Timmerman
Bart Ruttens
Elisabeth Stes
Kris Gevaert
Francis Impens
Bookchapter
in
Protein terminal profiling : methods and protocols
2017
Proteogenomics in aid of host-pathogen interaction studies : a bacterial perspective
Ursula Fels
Kris Gevaert
Petra Van Damme
A2
Journal Article
in
PROTEOMES
2017
REPARATION : ribosome profiling assisted (re-)annotation of bacterial genomes
Elvis Ndah
Veronique Jonckheere
Adam Giess
Eivind Valen
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2017
Ribosome signatures aid bacterial translation initiation site identification
Adam Giess
Veronique Jonckheere
Elvis Ndah
Katarzyna Chyżyńska
Petra Van Damme
Eivind Valen
A1
Journal Article
in
BMC BIOLOGY
2017
eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs
Daria Fijalkowska
Steven Verbruggen
Elvis Ndah
Veronique Jonckheere
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2017
2016
A role for human N-alpha acetyltransferase 30 (Naa30) in maintaining mitochondrial integrity
Petra Van Damme
Thomas V Kalvik
Kristian W Starheim
Veronique Jonckheere
Line M Myklebust
Gerben Menschaert
Jan Erik Varhaug
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms
Om Singh Rathore
Alexandra Faustino
Pedro Prudêncio
Petra Van Damme
Cymon J Cox
Rui Gonçalo Martinho
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
Alternative translation initiation unraveled by N-terminomics and ribosome profiling
Daria Fijalkowska
Petra Van Damme
Kris Gevaert
Dissertation
2016
Positional proteomics reveals differences in N-terminal proteoform stability
Daria Fijalkowska
Elvis Ndah
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR SYSTEMS BIOLOGY
2016
2015
An organellar Nα-acetyltransferase, Naa60, acetylates cytosolic N termini of transmembrane proteins and maintains Golgi integrity
Henriette Aksnes
Petra Van Damme
Marianne Goris
Kristian K Starheim
Michaël Marie
Svein Isungset Støve
Camilla Hoel
Thomas Vikestad Kalvik
Kristine Hole
Nina Glomnes
et al.
A1
Journal Article
in
CELL REPORTS
2015
Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects
Line M Myklebust
Petra Van Damme
Svein I Støve
Max J Dörfel
Angèle Abboud
Thomas V Kalvik
Cedric Grauffel
Veronique Jonckheere
Yiyang Wu
Jeffrey Swensen
et al.
A1
Journal Article
in
HUMAN MOLECULAR GENETICS
2015
C-terminomics screen for natural substrates of cytosolic carboxypeptidase 1 reveals processing of acidic protein C termini
Sebastian Tanco
Olivia Tort
Hans Demol
Francesc Xavier Aviles
Kris Gevaert
Petra Van Damme
Julia Lorenzo
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
C-terminomics: targeted analysis of natural and posttranslationally modified protein and peptide C-termini
Sebastian Tanco
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
PROTEOMICS
2015
Metabolic regulation of N-terminal acetylation in Saccharomyces cerevisiae
Sylvia Varland
Petra Van Damme
Jolien Hollebeke
Henriette Aksnes
Kris Gevaert
Thomas Arnesen
C3
Conference
2015
N-terminal acetylome analysis reveals the specificity of Naa50 (Nat5) and suggests a kinetic competition between N-terminal acetyltransferases and methionine aminopeptidases
Petra Van Damme
Kristine Hole
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PROTEOMICS
2015
OMICS views on protein N-terminal biology
Petra Van Damme
Kris Gevaert
Editorial material
2015
PROTEOFORMER : deep proteome coverage through ribosome profiling and MS integration
Jeroen Crappé
Elvis Ndah
Alexander Koch
Sandra Steyaert
Daria Fijalkowska
Sarah De Keulenaer
Ellen De Meester
Tim De Meyer
Wim Van Criekinge
Petra Van Damme
et al.
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
Proteomic identification of cysteine cathepsin substrates shed from the surface of cancer cells
Barbara Sobotič
Matej Vizovišek
Robert Vidmar
Petra Van Damme
Vasilena Gocheva
Johanna A Joyce
Kris Gevaert
Vito Turk
Boris Turk
Marko Fonović
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2015
2014
A Saccharomyces cerevisiae model reveals in vivo functional impairment of the Ogden syndrome N-Terminal Acetyltransferase NAA10 Ser37Pro Mutant
Petra Van Damme
Svein I. Støve
Nina Glomnes
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
Alexander Koch
Daria Fijalkowska
Sandra Steyaert
Elvis Ndah
Jeroen Crappé
Sarah De Keulenaer
Ellen De Meester
Ming Ma
Ben Shen
Kris Gevaert
et al.
A1
Journal Article
in
PROTEOMICS
2014
Granzyme M targets topoisomerase II alpha to trigger cell cycle arrest and caspase-dependent apoptosis
SAH de Poot
KW Lai
L van der Wal
Kim Plasman
Petra Van Damme
AC Porter
Kris Gevaert
N Bovenschen
A1
Journal Article
in
CELL DEATH AND DIFFERENTIATION
2014
Holistic view on the extended substrate specificities of orthologous granzymes
Kim Plasman
Sebastian Maurer-Stroh
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2014
Identification of Serpinb6b as a species-specific mouse granzyme A inhibitor suggests functional divergence between human and mouse granzyme A
Dion Kaiserman
Sarah E Stewart
Kim Plasman
Kris Gevaert
Petra Van Damme
Phillip I Bird
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2014
Importance of extended protease substrate recognition motifs in steering BNIP-2 cleavage by human and mouse granzymes B
Petra Van Damme
Kim Plasman
Giel Vandemoortele
Veronique Jonckheere
Sebastian Maurer-Stroh
Kris Gevaert
A1
Journal Article
in
BMC BIOCHEMISTRY
2014
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
Petra Van Damme
Daria Fijalkowska
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
Preparation of Arabidopsis thaliana seedling proteomes for identifying metacaspase substrates by N-terminal COFRADIC
Styliani Tsiatsiani
Simon Stael
Petra Van Damme
Frank Van Breusegem
Kris Gevaert
Bookchapter
in
Caspases, paracaspases, and metacaspases : methods and protocols
2014
Substrate specificities of the granzyme tryptases A and K
Kim Plasman
Hans Demol
Philip I Bird
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2014
The proteome under translational control
Daria Fijalkowska
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
PROTEOMICS
2014
2013
Conservation of the extended substrate specificity profiles among homologous granzymes across species
Kim Plasman
Sebastian Maurer-Stroh
Jamshaid Ahmad
Han Hao
Dion Kaiserman
Fernanda L Sirota
Veronique Jonckheere
Philip I Bird
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Contemporary positional proteomics strategies to study protein processing
Kim Plasman
Petra Van Damme
Kris Gevaert
A1
Journal Article
in
CURRENT OPINION IN CHEMICAL BIOLOGY
2013
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
Gerben Menschaert
Wim Van Criekinge
Tineke Notelaers
Alexander Koch
Jeroen Crappé
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Dissecting apoptosis the omics way
Petra Van Damme
Editorial material
2013
HPLC-based quantification of in vitro N-terminal acetylation
Rune H. Evjenth
Petra Van Damme
Kris Gevaert
Thomas Arnesen
Bookchapter
in
Protein Acetylation : Methods and Protocols
2013
In-gel N-acetylation for the quantification of the degree of protein in vivo N-terminal acetylation
Petra Van Damme
Thomas Arnesen
Bart Ruttens
Kris Gevaert
Bookchapter
in
Protein Acetylation : Methods and Protocols
2013
Mass spectrometry and ribosome profiling, a perfect combination towards a more comprehensive identification strategy of true in vivo protein forms
Jeroen Crappé
Alexander Koch
Sandra Steyaert
Wim Van Criekinge
Petra Van Damme
Gerben Menschaert
C3
Conference
2013
PROTEIN IDENTIFICATION BASED ON RIBOSOME TARGETED MRNA FRAGMENTS.
Elvis Ndah
Jeroen Crappé
Alexander Koch
Gerben Menschaert
Sandra Steyaert
Petra Van Damme
U
Conference
2013
Protein N-terminal acetyltransferases act as N-terminal propionyltransferases in vitro and in vivo
Håvard Foyn
Petra Van Damme
Svein I Støve
Nina Glomnes
Rune Evjenth
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Proteome-derived peptide libraries to study the substrate specificity profiles of carboxypeptidases
Sebastian Tanco
Julia Lorenzo
Javier Garcia-Pardo
Sven Degroeve
Lennart Martens
Francesc Xavier Aviles
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Reviving nuclear translation
Petra Van Damme
Gerben Menschaert
Other
2013
The Arabidopsis METACASPASE9 degradome
Styliani Tsiatsiani
Evy Timmerman
Pieter-Jan De Bock
Dominique Vercammen
Simon Stael
Brigitte Van De Cotte
An Staes
Marc Goethals
Tine Beunens
Petra Van Damme
et al.
A1
Journal Article
in
PLANT CELL
2013
The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events
Niklaas Colaert
Davy Maddelein
Francis Impens
Petra Van Damme
Kim Plasman
Kenny Helsens
Niels Hulstaert
Joël Vandekerckhove
Kris Gevaert
Lennart Martens
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2013
Unraveling substrate repertoires and specificities of orthologous granzymes by peptide-based, gel-free proteomics
Kim Plasman
Kris Gevaert
Petra Van Damme
Dissertation
2013
Vpr content of HIV-1 virions determines infection of resting peripheral blood CD4⁺ lymphocytes
Anouk Van Nuffel
Francis Impens
Ann Baeyens
Stijn Vanhee
Wojciech Witkowski
Elien Vandermarliere
Hanne Vanderstraeten
Evelien Naessens
Kathleen Van Landeghem
Sophie Vermaut
et al.
C3
Conference
2013
2012
Degradomics reveals that cleavage specificity profiles of caspase-2 and effector caspases are alike
Magdalena Wejda
Francis Impens
Nozomi Takahashi
Petra Van Damme
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2012
N-terminal acetylation and other functions of Nα-acetyltransferases
Jolien Hollebeke
Petra Van Damme
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2012
N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB
Petra Van Damme
Marta Lasa
Bogdan Polevoda
Cristina Gazquez
Alberto Elosegui-Artola
Duk Soo Kim
Elena De Juan-Pardo
Kimberly Demeyer
Kristine Hole
Esther Larrea
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2012
2011
Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation
Kenny Helsens
Petra Van Damme
Sven Degroeve
Lennart Martens
Thomas Arnesen
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2011
Caspase-14 is required for filaggrin degradation to natural moisturizing factors in the skin
Esther Hoste
Patrick Kemperman
Michael Devos
Geertrui Denecker
Sanja Kezic
Nico Yau
Barbara Gilbert
Saskia Lippens
Philippe De Groote
Ria Roelandt
et al.
A1
Journal Article
in
JOURNAL OF INVESTIGATIVE DERMATOLOGY
2011
Human and mouse granzyme M display divergent and species-specific substrate specificities
Stefanie AH de Poot
Marijn Westgeest
Daniel R Hostetter
Petra Van Damme
Kim Plasman
Kimberly Demeyer
Roel Broekhuizen
Kris Gevaert
Charles S Craik
Niels Bovenschen
A1
Journal Article
in
BIOCHEMICAL JOURNAL
2011
NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation
Petra Van Damme
Kristine Hole
Ana Pimenta-Marques
Kenny Helsens
Joël Vandekerckhove
Rui G Martinho
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PLOS GENETICS
2011
Probing the efficiency of proteolytic events by positional proteomics
Kim Plasman
Petra Van Damme
Dion Kaiserman
Francis Impens
Kimberly Demeyer
Kenny Helsens
Marc Goethals
Phillip I Bird
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2011
Protein alpha-N-acetylation studied by N-terminomics
Petra Van Damme
Thomas Arnesen
Kris Gevaert
A1
Journal Article
in
FEBS JOURNAL
2011
Proteome-derived peptide libraries allow detailed analysis of the substrate specificities of Nα-acetyltransferases and point to hNaa10p as the post-translational actin Nα-acetyltransferase
Petra Van Damme
Rune Evjenth
Havard Foyn
Kimberly Demeyer
Pieter-Jan De Bock
Johan R Lillehaug
Joël Vandekerckhove
Thomas Arnesen
Kris Gevaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2011
Selecting protein N-terminal peptides by combined fractional diagonal chromatography
An Staes
Francis Impens
Petra Van Damme
Bart Ruttens
Marc Goethals
Hans Demol
Evy Timmerman
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE PROTOCOLS
2011
T-cell receptor-induced JNK activation requires proteolytic inactivation of CYLD by MALT1
Jens Staal
Yasmine Driege
Tine Bekaert
Annelies Demeyer
David Muyllaert
Petra Van Damme
Kris Gevaert
Rudi Beyaert
A1
Journal Article
in
EMBO JOURNAL
2011
The human N-alpha-acetyltransferase 40 (hNaa40p/hNatD) is conserved from yeast and N-terminally acetylates histones H2A and H4
Kristine Hole
Petra Van Damme
Monica Dalva
Henriette Aksnes
Nina Glomnes
Jan Erik Varhaug
Johan R Lillehaug
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
PLOS ONE
2011
2010
Complementary positional proteomics for screening substrates of endo- and exoproteases
Petra Van Damme
An Staes
Silvia Bronsoms
Kenny Helsens
Niklaas Colaert
Evy Timmerman
Francesc X Aviles
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE METHODS
2010
MS-driven protease substrate degradomics
Francis Impens
Niklaas Colaert
Kenny Helsens
Kim Plasman
Petra Van Damme
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2010
The chaperone-like Protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregation
Thomas Arnesen
Kristian K Starheim
Petra Van Damme
Rune Evjenth
Huyen Dinh
Matthew J Betts
Anita Ryningen
Joël Vandekerckhove
Kris Gevaert
Dave Anderson
A1
Journal Article
in
MOLECULAR AND CELLULAR BIOLOGY
2010
The substrate specificity profile of human granzyme A
Petra Van Damme
Sebastian Maurer-Stroh
Han Hao
Niklaas Colaert
Evy Timmerman
Frank Eisenhaber
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2010
2009
A review of COFRADIC techniques targeting protein N-terminal acetylation
Petra Van Damme
Jozef Van Damme
Hans Demol
An Staes
Joël Vandekerckhove
Kris Gevaert
C1
Conference
2009
Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs
Petra Van Damme
Sebastian Maurer-Stroh
Kim Plasman
Joost Van Durme
Niklaas Colaert
Evy Timmerman
Pieter-Jan De Bock
Marc Goethals
Frederic Rousseau
Joost Schymkowitz
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2009
Caspase substrates: easily caught in deep waters?
Dieter Demon
Petra Van Damme
Tom Vanden Berghe
Joël Vandekerckhove
Wim Declercq
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
TRENDS IN BIOTECHNOLOGY
2009
Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity
Dieter Demon
Petra Van Damme
Tom Vanden Berghe
Annelies Deceuninck
Joost Van Durme
Jelle Verspurten
Kenny Helsens
Francis Impens
Magdalena Wejda
Joost Schymkowitz
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2009
Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans
Thomas Arnesen
Petra Van Damme
Bogdan Polevoda
Kenny Helsens
Rune Evjenth
Niklaas Colaert
Jan Erik Varhaug
Joël Vandekerckhove
Johan Lillehaug
Fred Sherman
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2009
Structure of granzyme C reveals an unusual mechanism of protease autoinhibition
Dion Kaiserman
Ashley M Buckle
Petra Van Damme
James A. Irving
Ruby H. P. Law
Antony Y. Matthews
Tanya Bashtannyk-Puhalovich
Chris Langendorf
Philip Thompson
Joël Vandekerckhove
et al.
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2009
2008
Abolition of stress-induced protein synthesis sensitizes leukemia cells to anthracycline-induced death
Gro Gausdal
Bjøorn Tore Gjertsen
Emmet McCormack
Petra Van Damme
Randi Hovland
Camilla Krakstad
Øystein Bruserud
Kris Gevaert
Joël Vandekerckhove
Stein Ove Døskeland
A1
Journal Article
in
BLOOD
2008
Caspase-14 is a crucial protease in proper stratum corneum formation
E HOSTE
G DENECKER
Petra Van Damme
J HACHEM
B GILBERT
Petra Ovaere
RB PRESLAND
T MAKINO
N HUH
PM ELIAS
et al.
C3
Conference
2008
Disentanglement of protease substrate repertoires
Petra Van Damme
J VANDELKERCKHOVE
Kris Gevaert
A1
Journal Article
in
BIOLOGICAL CHEMISTRY
2008
Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)
An Staes
Petra Van Damme
Kenny Helsens
Hans Demol
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2008
Mechanistic insight into taxol-induced cell death
Francis Impens
Petra Van Damme
Hans Demol
Jozef Van Damme
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
ONCOGENE
2008
Protein processing characterized by a gel-free proteomics approach
Petra Van Damme
Francis Impens
Joël Vandekerckhove
Kris Gevaert
Bookchapter
in
Functional proteomics, part III
2008
Stable isotopic labeling in proteomics
Kris Gevaert
Francis Impens
Bart Ghesquière
Petra Van Damme
Anja Lambrechts
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2008
Targeted peptidecentric proteomics reveals caspase-7 as a substrate of the caspase-1 inflammasomes
Mohamed Lamkanfi
Thirumala-Devi Kanneganti
Petra Van Damme
Tom Vanden Berghe
Isabel Vanoverberghe
Joël Vandekerckhove
Peter Vandenabeele
Kris Gevaert
Gabriel Nuñez
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2008
The substrate repertoire and the specificity of proteases assessed by peptide-centric proteomics
Petra Van Damme
Kris Gevaert
Dissertation
2008
2007
A la carte proteomics with an emphasis on gel-free techniques
Kris Gevaert
Petra Van Damme
Bart Ghesquière
Francis Impens
Lennart Martens
Kenny Helsens
Joël Vandekerckhove
A1
Journal Article
in
PROTEOMICS
2007
Applications of diagonal chromatography for proteome-wide characterization of protein modifications and activity-based analyses
Kris Gevaert
Francis Impens
Petra Van Damme
Bart Ghesquière
Xavier Hanoulle
Joël Vandekerckhove
A1
Journal Article
in
FEBS JOURNAL
2007
Caspase-14 protects against epidermal UVB photo-damage and water loss
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
C VAN DEN BROUCKE
Petra Van Damme
Katharina D'Herde
J HACHEM
et al.
C3
Conference
2007
Caspase-14 protects against epidermal UVB photo-damage and water loss.
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
C VAN DEN BROUCKE
Petra Van Damme
Katharina D'Herde
J HACHEM
et al.
C3
Conference
2007
Caspase-14 protects against epidermal UVB photodamage and water loss
Geertrui Denecker
Esther Hoste
Barbara Gilbert
Tino Hochepied
Petra Ovaere
Saskia Lippens
Caroline Van den broecke
Petra Van Damme
Katharina D'Herde
JP HACHEM
et al.
A1
Journal Article
in
NATURE CELL BIOLOGY
2007
Identification and characterization of filaggrin as a caspase-14 substrate
Esther Hoste
Geertrui Denecker
Petra Van Damme
RB PRESLAND
Joël Vandekerckhove
Kris Gevaert
Peter Vandenabeele
Wim Declercq
C3
Conference
2007
Proteome-wide identification of HtrA2/Omi substrates
Lieselotte Vande Walle
Petra Van Damme
Mohamed Lamkanfi
Xavier Saelens
Joël Vandekerckhove
Kris Gevaert
Peter Vandenabeele
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2007
2006
Protein processing and other modifications analyzed by diagonal peptide chromatography
Kris Gevaert
Petra Van Damme
Bart Ghesquière
Joël Vandekerckhove
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
2006
2005
Caspase-specific and nonspecific in vivo protein processing during Fas-induced apoptosis
Petra Van Damme
Lennart Martens
Jozef Van Damme
Koen Hugelier
An Staes
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
NATURE METHODS
2005
Diagonal reverse-phase chromatography applications in peptide-centric proteomics: ahead of catalogue-omics?
Kris Gevaert
Petra Van Damme
Lennart Martens
Joël Vandekerckhove
A1
Journal Article
in
ANALYTICAL BIOCHEMISTRY
2005
The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile
Lennart Martens
Petra Van Damme
Jozef Van Damme
An Staes
Evy Timmerman
Bart Ghesquière
Grégoire R Thomas
Joël Vandekerckhove
Kris Gevaert
A1
Journal Article
in
PROTEOMICS
2005
2003
Transcriptional activation of the NF-kappa B p65 subunit by mitogen- and stress-activated protein kinase-1 (MSK1)
Linda Vermeulen
Gert De Wilde
Petra Van Damme
Wim Vanden Berghe
Guy Haegeman
A1
Journal Article
in
EMBO JOURNAL
2003