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Researcher
Peter Dawyndt
Profile
Projects
Publications
Activities
Awards & Distinctions
114
Results
2024
Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial
Tim Van Den Bossche
Pieter Verschaffelt
Tibo Vande Moortele
Peter Dawyndt
Lennart Martens
Bart Mesuere
Bookchapter
in
Protein bioinformatics
2024
Blink : an educational software debugger for Scratch
Niko Strijbol
Robbe De Proft
Klaas Goethals
Bart Mesuere
Peter Dawyndt
Christophe Scholliers
A1
Journal Article
in
SOFTWAREX
2024
Discovering and exploring cases of educational source code plagiarism with Dolos
Rien Maertens
Maarten Van Neyghem
Maxiem Geldhof
Charlotte Van Petegem
Niko Strijbol
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
SOFTWAREX
2024
Reproducing predictive learning analytics in CS1 : toward generalizable and explainable models for enhancing student retention
Denis Zhidkikh
Ville Heilala
Charlotte Van Petegem
Peter Dawyndt
Miitta Järvinen
Sami Viitanen
Bram De Wever
Bart Mesuere
Vesa Lappalainen
Lauri Kettunen
et al.
A2
Journal Article
in
JOURNAL OF LEARNING ANALYTICS
2024
2023
Blink : an educational software debugger for Scratch
Niko Strijbol
Christophe Scholliers
Peter Dawyndt
P1
Conference
2023
Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities
Pieter Verschaffelt
Peter Dawyndt
Lennart Martens
Bart Mesuere
Dissertation
2023
Dodona : learn to code with a virtual co-teacher that supports active learning
Charlotte Van Petegem
Rien Maertens
Niko Strijbol
Jorg Van Renterghem
Felix Van der Jeugt
Bram De Wever
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
SOFTWAREX
2023
Dodona : learn to code with a virtual co-teacher that supports active learning
Charlotte Van Petegem
Peter Dawyndt
Bart Mesuere
P1
Conference
2023
Dolos 2.0 : towards seamless source code plagiarism detection in online learning environments
Rien Maertens
Peter Dawyndt
Bart Mesuere
C3
Conference
2023
TESTed : an educational testing framework with language-agnostic test suites for programming exercises
Niko Strijbol
Charlotte Van Petegem
Rien Maertens
Boris Sels
Christophe Scholliers
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
SOFTWAREX
2023
Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses
Pieter Verschaffelt
Alessandro Tanca
Marcello Abbondio
Tim Van Den Bossche
Tibo Vande Moortele
Peter Dawyndt
Lennart Martens
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2023
2022
Dolos : language‐agnostic plagiarism detection in source code
Rien Maertens
Charlotte Van Petegem
Niko Strijbol
Toon Baeyens
Arne Jacobs
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF COMPUTER ASSISTED LEARNING
2022
FragGeneScanRs : faster gene prediction for short reads
Felix Van der Jeugt
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BMC BIOINFORMATICS
2022
Pass/fail prediction in programming courses
Charlotte Van Petegem
Louise Deconinck
Dieter Mourisse
Rien Maertens
Niko Strijbol
Bart Dhoedt
Bram De Wever
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF EDUCATIONAL COMPUTING RESEARCH
2022
Stack Mapping Anchor Points (SMAP): a versatile suite of tools for read-backed haplotyping
Dries Schaumont
Elisabeth Veeckman
Felix Van der Jeugt
Annelies Haegeman
Sabine Van Glabeke
Yves Bawin
Joanna Lukasiewicz
Sebastien Blugeon
Philippe Barre
Maria de la O Leyva-Pérez
et al.
Preprint
2022
The unipept metagenomics analysis pipeline
Felix Van der Jeugt
Peter Dawyndt
Bart Mesuere
Dissertation
2022
UMGAP : the Unipept MetaGenomics analysis pipeline
Felix Van der Jeugt
Rien Maertens
Aranka Steyaert
Pieter Verschaffelt
Caroline De Tender
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BMC GENOMICS
2022
Unipept visualizations : an interactive visualization library for biological data
Pieter Verschaffelt
James Collier
Alexander Botzki
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BIOINFORMATICS
2022
2021
Chitin in strawberry cultivation : foliar growth and defense response promotion, but reduced fruit yield and disease resistance by nutrient imbalances
Caroline De Tender
Bart Vandecasteele
Bruno Verstraeten
Sarah Ommeslag
Tim De Meyer
Jill De Visscher
Peter Dawyndt
Lieven Clement
Tina Kyndt
Jane Debode
A1
Journal Article
in
MOLECULAR PLANT-MICROBE INTERACTIONS
2021
Unipept Desktop : a faster, more powerful metaproteomics results analysis tool
Pieter Verschaffelt
Tim Van Den Bossche
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2021
2020
Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis
Tim Van Den Bossche
Pieter Verschaffelt
Kay Schallert
Harald Barsnes
Peter Dawyndt
Dirk Benndorf
Bernhard Y. Renard
Bart Mesuere
Lennart Martens
Thilo Muth
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2020
Unipept CLI 2.0 : adding support for visualizations and functional annotations
Pieter Verschaffelt
Philippe Van Thienen
Tim Van Den Bossche
Felix Van der Jeugt
Caroline De Tender
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
BIOINFORMATICS
2020
2019
A method for comprehensive proteomic analysis of human faecal samples to investigate gut dysbiosis in patients with cystic fibrosis
Griet Debyser
Maarten Aerts
Pieter Van Hecke
Bart Mesuere
Gwen Duytschaever
Peter Dawyndt
Kris De Boeck
Peter Vandamme
Bart Devreese
A1
Journal Article
in
ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY
2019
Development of genomic resources for perennial ryegrass
Elisabeth Veeckman
Klaas Vandepoele
Tom Ruttink
Peter Dawyndt
Dissertation
2019
Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data
Charles Dumolin
Maarten Aerts
Bart Verheyde
Simon Schellaert
Tim Vandamme
Felix Van der Jeugt
Evelien De Canck
Margo Cnockaert
Anneleen Wieme
Ilse Cleenwerck
et al.
A1
Journal Article
in
MSYSTEMS
2019
Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome
Caroline De Tender
Bart Mesuere
Felix Van der Jeugt
A Haegeman
Tom Ruttink
B Vandecasteele
Peter Dawyndt
J Debode
EE Kuramae
A1
Journal Article
in
SCIENTIFIC REPORTS
2019
Unipept 4.0 : functional analysis of metaproteome data
Robbert Gurdeep Singh
Alessandro Tanca
Antonio Palomba
Felix Van der Jeugt
Pieter Verschaffelt
Sergio Uzzau
Lennart Martens
Peter Dawyndt
Bart Mesuere
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2019
2018
High-throughput metaproteomics data analysis with Unipept : a tutorial
Bart Mesuere
Felix Van der Jeugt
Toon Willems
Tom Naessens
Bart Devreese
Lennart Martens
Peter Dawyndt
A1
Journal Article
in
JOURNAL OF PROTEOMICS
2018
Multifunctional sequence-defined macromolecules for chemical data storage
Steven Martens
Annelies Landuyt
Pieter Espeel
Bart Devreese
Peter Dawyndt
Filip Du Prez
A1
Journal Article
in
NATURE COMMUNICATIONS
2018
2017
Microbial community analysis in soil (rhizosphere) and the marine (plastisphere) environment in function of plant health and biofilm formation
Caroline De Tender
Peter Dawyndt
Martine Maes
Lisa Devriese
Dissertation
2017
Temporal dynamics of bacterial and fungal colonization on plastic debris in the North Sea
Caroline De Tender
Lisa I Devriese
Annelies Haegeman
Sara Maes
Jürgen Vangeyte
André Cattrijsse
Peter Dawyndt
Tom Ruttink
A1
Journal Article
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2017
2016
Biological, physicochemical and plant health responses in lettuce and strawberry in soil or peat amended with biochar
Caroline De Tender
Jane Debode
Bart Vandecasteele
Tommy D’Hose
Pieter Cremelie
Annelies Haegeman
Tom Ruttink
Peter Dawyndt
Martine Maes
A1
Journal Article
in
APPLIED SOIL ECOLOGY
2016
Dynamics in the strawberry rhizosphere microbiome in response to biochar and Botrytis cinerea leaf infection
Caroline De Tender
Annelies Haegeman
Bart Vandecasteele
Lieven Clement
Pieter Cremelie
Peter Dawyndt
Martine Maes
Jane Debode
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2016
Faecal proteomics : a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis
Griet Debyser
Bart Mesuere
Lieven Clement
Jens Van de Weygaert
Pieter Van Hecke
Gwen Duytschaever
Maarten Aerts
Peter Dawyndt
Kris De Boeck
Peter Vandamme
et al.
A1
Journal Article
in
JOURNAL OF CYSTIC FIBROSIS
2016
Global alternans instability and its effect on non-linear wave propagation : dynamical Wenckebach block and self terminating spiral waves
Nele Vandersickel
Arne Defauw
Peter Dawyndt
Alexander Panfilov
A1
Journal Article
in
SCIENTIFIC REPORTS
2016
The unique peptidome : taxon-specific tryptic peptides as biomarkers for targeted metaproteomics
Bart Mesuere
Felix Van der Jeugt
Bart Devreese
Peter Vandamme
Peter Dawyndt
A1
Journal Article
in
PROTEOMICS
2016
Unipept web services for metaproteomics analysis
Bart Mesuere
Toon Willems
Felix Van der Jeugt
Bart Devreese
Peter Vandamme
Peter Dawyndt
A1
Journal Article
in
BIOINFORMATICS
2016
Unipept: computational exploration of metaproteome data
Bart Mesuere
Peter Dawyndt
Dissertation
2016
2015
A cross-sectional and longitudinal metaproteomics approach reveals intestinal dysbiosis, and the presence of markers of chronic inflammation and mucus-related proteins in faecal samples of patients with cystic fibrosis
Griet Debyser
Bart Mesuere
Jens Van de Weygaert
Lieven Clement
Maarten Aerts
Gwen Duytschaever
Peter Dawyndt
K De Boeck
Peter Vandamme
Bart Devreese
C3
Conference
2015
A long fragment aligner called ALFALFA
Michaël Vyverman
Bernard De Baets
Veerle Fack
Peter Dawyndt
A1
Journal Article
in
BMC BIOINFORMATICS
2015
Bacterial community profiling of plastic litter in the Belgian part of the North Sea
Caroline De Tender
Lisa I Devriese
Annelies Haegeman
Sara Maes
Tom Ruttink
Peter Dawyndt
A1
Journal Article
in
ENVIRONMENTAL SCIENCE & TECHNOLOGY
2015
Human heart heterogeneity and its role in the onset and perpetuation of cardiac arrhythmias
Arne Defauw
Alexander Panfilov
Peter Dawyndt
Dissertation
2015
The Unipept metaproteomics analysis pipeline
Bart Mesuere
Griet Debyser
Maarten Aerts
Bart Devreese
Peter Vandamme
Peter Dawyndt
A1
Journal Article
in
PROTEOMICS
2015
2014
ALFALFA : fast and accurate mapping of long next generation sequencing reads
Michaël Vyverman
Peter Dawyndt
Bernard De Baets
Veerle Fack
Dissertation
2014
Fast and accurate cDNA mapping and splice site identification
Michaël Vyverman
Dieter De Smedt
Yao-Cheng Lin
Lieven Sterck
Bernard De Baets
Veerle Fack
Peter Dawyndt
P1
Conference
2014
Genomic Standards Consortium projects
Dawn Field
Peter Sterk
Renzo Kottmann
Wim De Smet
Linda Amaral-Zettler
Guy Cochrane
James R Cole
Neil Davies
Peter Dawyndt
George M Garrity
et al.
A1
Journal Article
in
STANDARDS IN GENOMIC SCIENCES
2014
Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains
Nikos C Kyrpides
Philip Hugenholtz
Jonathan A Eisen
Tanja Woyke
Markus Göker
Charles T Parker
Rudolf Amann
Brian J Beck
Patrick SG Chain
Jongsik Chun
et al.
Editorial material
2014
Genomic taxonomy and biodiversity of the Burkholderia cepacia complex
Peter Vandamme
Bart Verheyde
Charlotte Peeters
Peter Dawyndt
Bookchapter
in
Burkholderia : from genomes to function
2014
Small size ionic heterogeneities in the human heart can attract rotors
Arne Defauw
Nele Vandersickel
Peter Dawyndt
Alexander Panfilov
A1
Journal Article
in
AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY
2014
StrainInfo introduces electronic passports for microorganisms
Bert Verslyppe
Wim De Smet
Bernard De Baets
Paul De Vos
Peter Dawyndt
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2014
2013
Action potential duration heterogeneity of cardiac tissue can be evaluated from cell properties using Gaussian Green's function approach
Arne Defauw
Ivan Kazbanov
Hans Dierckx
Peter Dawyndt
Alexander Panfilov
A1
Journal Article
in
PLOS ONE
2013
Explicit sequence-culture-strain-taxon links in StrainInfo and their role in quality assessment and assurance
Wim De Smet
Peter Dawyndt
Bernard De Baets
Paul De Vos
Dissertation
2013
Filtering and ranking techniques for automated selection of high-quality 16S rRNA gene sequences
Wim De Smet
Karel De Loof
Paul De Vos
Peter Dawyndt
Bernard De Baets
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2013
Initiation and dynamics of a spiral wave around an ionic heterogeneity in a model for human cardiac tissue
Arne Defauw
Peter Dawyndt
Alexander Panfilov
A1
Journal Article
in
PHYSICAL REVIEW E
2013
essaMEM: finding maximal exact matches using enhanced sparse suffix arrays
Michaël Vyverman
Bernard De Baets
Veerle Fack
Peter Dawyndt
A1
Journal Article
in
BIOINFORMATICS
2013
2012
A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients
Griet Debyser
Bart Mesuere
Peter Dawyndt
Peter Vandamme
Bart Devreese
C3
Conference
2012
A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients
Griet Debyser
Bart Mesuere
Peter Dawyndt
Peter Vandamme
Bart Devreese
C3
Conference
2012
Prospects and limitations of full-text index structures in genome analysis
Michaël Vyverman
Bernard De Baets
Veerle Fack
Peter Dawyndt
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2012
StrainInfo : from microbial information to microbiological knowledge
Bert Verslyppe
Peter Dawyndt
Bernard De Baets
Paul De Vos
Dissertation
2012
Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples
Bart Mesuere
Bart Devreese
Griet Debyser
Maarten Aerts
Peter Vandamme
Peter Dawyndt
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2012
2011
Accurate long read mapping using enhanced suffix arrays
Michaël Vyverman
Joachim De Schrijver
Wim Van Criekinge
Peter Dawyndt
Veerle Fack
P1
Conference
2011
Classification and identification of the Burkholderia cepacia complex: past, present and future
Peter Vandamme
Peter Dawyndt
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2011
Data shopping in an open marketplace: introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
Norman Morrison
David Hancock
Lynette Hirschman
Peter Dawyndt
Bert Verslyppe
Nikos Kyrpides
Renzo Kottmann
Pelin Yilmaz
Frank Oliver Glöckner
Jeff Grethe
et al.
A1
Journal Article
in
STANDARDS IN GENOMIC SCIENCES
2011
Make Histri: reconstructing the exchange history of bacterial and archaeal type strains
Bert Verslyppe
Wim De Smet
Bernard De Baets
Paul De Vos
Peter Dawyndt
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
Pelin Yilmaz
Renzo Kottmann
Dawn Field
Rob Knight
James R Cole
Linda Amaral-Zettler
Jack A Gilbert
Ilene Karsch-Mizrachi
Anjanette Johnston
Guy Cochrane
et al.
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2011
The Genomic Standards Consortium
Dawn Field
Linda Amaral-Zettler
Guy Cochrane
James R Cole
Peter Dawyndt
George M Garrity
Jack Gilbert
Frank Oliver Glöckner
Lynette Hirschman
Ilene Karsch-Mizrachi
et al.
Editorial material
2011
2010
Accurate long read mapping using enhanced suffix arrays
Michaël Vyverman
Joachim De Schrijver
Wim Van Criekinge
Peter Dawyndt
Veerle Fack
C3
Conference
2010
Análisis de Pseudomonas fitopatógenas usando métodos inteligentes de aprendizaje un enfoque general sobre taxonomía y análisis de ácidos grasos dentro del género Pseudomonas
Bram Slabbinck
Bernard De Baets
Peter Dawyndt
Paul De Vos
A2
Journal Article
in
REVISTA MEXICANA DE FITOPATOLOGIA
2010
From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification
Bram Slabbinck
Willem Waegeman
Peter Dawyndt
Paul De Vos
Bernard De Baets
A1
Journal Article
in
BMC BIOINFORMATICS
2010
Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons
Bert Verslyppe
Renzo Kottmann
Wim De Smet
Bernard De Baets
Paul De Vos
Peter Dawyndt
A1
Journal Article
in
RESEARCH IN MICROBIOLOGY
2010
Screening for taxon-specific peptides using dynamic index structures
Bart Mesuere
Griet Debyser
Peter Vandamme
Bart Devreese
Peter Dawyndt
C3
Conference
2010
Semantic integration of isolation habitat and location in StrainInfo
Bert Verslyppe
Wim De Smet
Paul De Vos
Bernard De Baets
Peter Dawyndt
C3
Conference
2010
2009
Bayesian clustering of fuzzy feature vectors using a quasi-likelihood approach
Pekka Marttinen
Jing Tang
Bernard De Baets
Peter Dawyndt
Jukka Corander
A1
Journal Article
in
IEEE Transactions on Pattern Analysis and Machine Intelligence
2009
From learning taxonomies to phylogenetic learning: a computational approach to FAME-based bacterial species identification
Bram Slabbinck
Bernard De Baets
Paul De Vos
Peter Dawyndt
Dissertation
2009
Machine learning algorithms for coupling FAME and 16S rRNA data in bacterial species identification
Dries Van Audenhove
Willem Waegeman
Bram Slabbinck
Peter Dawyndt
Bernard De Baets
C3
Conference
2009
Towards large-scale FAME-based bacterial species identification using machine learning techniques
Bram Slabbinck
Bernard De Baets
Peter Dawyndt
Paul De Vos
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2009
2008
Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)
Miet Martens
Peter Dawyndt
Renata Coopman
Monique Gillis
Paul De Vos
Anne Willems
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2008
Ecological diversification in the Bacillus cereus Group
MH GUINEBRETIERE
FL THOMPSON
A SOROKIN
P NORMAND
Peter Dawyndt
M EHLING-SCHULZ
B SVENSSON
V SANCHIS
C NGUYEN-THE
Marc Heyndrickx
et al.
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2008
Genus-wide Bacillus species identification through proper artificial neural network experiments on fatty acid profiles
Bram Slabbinck
Bernard De Baets
Peter Dawyndt
Paul De Vos
A1
Journal Article
in
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
2008
Laying the foundation for a genomic rosetta stone: Creating information hubs through the use of consensus identifiers
Bart Van Brabant
T GRAY
Bert Verslyppe
N KYRPIDES
K DIETRICH
FO GLOCKNER
J COLE
R FARRIS
LM SCHRIML
Paul De Vos
et al.
A1
Journal Article
in
OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY
2008
Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex
Elke Vanlaere
Kjell Sergeant
Peter Dawyndt
W KALLOW
M ERHARD
H SUTTON
D DARE
Bart Devreese
Bart Samyn
Peter Vandamme
A1
Journal Article
in
JOURNAL OF MICROBIOLOGICAL METHODS
2008
StrainInfo.net Web services: enabling microbiologic workflows such as phylogenetic tree building and biomarker comparison
Bert Verslyppe
Bram Slabbinck
Wim De Smet
Paul De Vos
Bernard De Baets
Peter Dawyndt
C1
Conference
2008
TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers
Bram Slabbinck
Peter Dawyndt
M MARTENS
Paul De Vos
Bernard De Baets
A1
Journal Article
in
BIOINFORMATICS
2008
The minimum information about a genome sequence (MIGS) specification
D FIELD
G GARRITY
T GRAY
N MORRISON
J SELENGUT
P STERK
T TATUSOVA
N THOMSON
MJ ALLEN
SV ANGIUOLI
et al.
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2008
2007
Genus-wide Bacillus species classification based on FAME profiles
Bram Slabbinck
Bernard De Baets
Peter Dawyndt
Paul De Vos
C1
Conference
2007
Identification of lactobacilli by pheS and rpoA gene sequence analyses
Sabri Naser
Peter Dawyndt
Bart Hoste
Dirk Gevers
Katrien Vandemeulebroecke
Ilse Cleenwerck
Marc Vancanneyt
Jean Swings
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2007
2006
A knuckles-and-nodes approach to the integration of microbiological resource data
Bart Van Brabant
Peter Dawyndt
Bernard De Baets
Paul De Vos
P1
Conference
2006
FAME-based Bacillus Species Identification using Artificial Neural Networks
Bram Slabbinck
Peter Dawyndt
Bernard De Baets
Paul De Vos
C1
Conference
2006
Larkinella insperata gen. nov., sp nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator
Marc Vancanneyt
OI NEDASHKOVSKAYA
Cindy Snauwaert
Stefanie Mortier
Katrien Vandemeulebroecke
Bart Hoste
Peter Dawyndt
GM FROLOVA
Daniëlle Janssens
Jean Swings
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2006
Mining fatty acid databases for detection of novel compounds in aerobic bacteria
Peter Dawyndt
Marc Vancanneyt
Cindy Snauwaert
Bernard De Baets
Hans De Meyer
Jean Swings
A1
Journal Article
in
JOURNAL OF MICROBIOLOGICAL METHODS
2006
Raman microspectroscopy as an identification tool within the phylogenetically homogeneous 'Bacillus subtilis'-group
Didier Hutsebaut
Joachim Vandroemme
Jeroen Heyrman
Peter Dawyndt
Peter Vandenabeele
Luc Moens
Paul De Vos
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2006
Stepping stones towards a new prokaryotic taxonomy
Dirk Gevers
Peter Dawyndt
Peter Vandamme
Anne Willems
Marc Vancanneyt
Jean Swings
Paul De Vos
A1
Journal Article
in
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
2006
UPGMA clustering revisited: A weight-driven approach to transitive approximation
Peter Dawyndt
Hans De Meyer
Bernard De Baets
A1
Journal Article
in
INTERNATIONAL JOURNAL OF APPROXIMATE REASONING
2006
2005
Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes
Sabri Naser
FL THOMPSON
Bart Hoste
Dirk Gevers
Peter Dawyndt
Marc Vancanneyt
Jean Swings
A1
Journal Article
in
MICROBIOLOGY-SGM
2005
Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae
Peter Dawyndt
FL THOMPSON
B AUSTIN
Jean Swings
T KOSKI
M GYLLENBERG
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2005
Grouping of streptomycetes using 16S-ITS RFLP fingerprinting
Benjamin Lanoot
Marc Vancanneyt
Bart Hoste
Katrien Vandemeulebroecke
Margo Cnockaert
Peter Dawyndt
ZH LIU
Y HUANG
Jean Swings
A1
Journal Article
in
RESEARCH IN MICROBIOLOGY
2005
Improving interoperability between microbial information and sequence databases
P ROMANO
Peter Dawyndt
F PIERSIGILLI
Jean Swings
A1
Journal Article
in
BMC BIOINFORMATICS
2005
Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources
Peter Dawyndt
Marc Vancanneyt
Hans De Meyer
Jean Swings
A1
Journal Article
in
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING
2005
Molecular characterization, technological properties and safety aspects of enterococci from 'Hussuwa', an African fermented sorghum product
NMK YOUSIF
Peter Dawyndt
H ABRIOUEL
A WIJAYA
U SCHILLINGER
Marc Vancanneyt
Jean Swings
HA DIRAR
WH HOLZAPFEL
CMAP FRANZ
A1
Journal Article
in
JOURNAL OF APPLIED MICROBIOLOGY
2005
Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
FL THOMPSON
Dirk Gevers
CC THOMPSON
Peter Dawyndt
Sabri Naser
Bart Hoste
CB MUNN
Jean Swings
A1
Journal Article
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2005
Reclassification of [Cytophaga] marinoflava Relchenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov and description of Leeuwenhoekiella aequorea sp nov
OI NEDASHKOVSKAYA
Marc Vancanneyt
Peter Dawyndt
Katrien Engelbeen
Katrien Vandemeulebroecke
Ilse Cleenwerck
Bart Hoste
J MERGAERT
TL TAN
GM FROLOVA
et al.
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2005
Staphylococcus pseudintermedius sp nov., a coagulase-positive species from animals
Luc Devriese
Marc Vancanneyt
Margo Baele
Mario Vaneechoutte
Evelyne De Graef
Cindy Snauwaert
Ilse Cleenwerck
Peter Dawyndt
Jean Swings
Annemie Decostere
et al.
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2005
The complete linkage clustering algorithm revisited
Peter Dawyndt
Hans De Meyer
Bernard De Baets
A1
Journal Article
in
SOFT COMPUTING
2005
2004
BOX-PCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S-fradiae, S-tricolor, S-colombiensis, S-filamentosus, S-vinaceus and S-phaeopurpureus
Benjamin Lanoot
Marc Vancanneyt
Peter Dawyndt
Margo Cnockaert
JL ZHANG
Y HUANG
ZH LIU
Jean Swings
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2004
Knowledge Accumulation of Microbial Data Aiming at a Dynamic Taxonomic Framework
Peter Dawyndt
H De Meyer
J Swings
Dissertation
2004
On the integration of microbial information
Peter Dawyndt
Marc Vancanneyt
Jean Swings
A4
Journal Article
in
WFCC NEWSLETTER
2004
On the min-transitive approximation of symmetric fuzzy relations
Peter Dawyndt
Hans De Meyer
Bernard De Baets
P1
Conference
2004
On the min-transitive approximation of symmetric fuzzy relations
Peter Dawyndt
Hans De Meyer
Bernard De Baets
C1
Conference
2004
Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp kefirgranum subsp nov and emended description of L-kefiranofaciens Fujisawa et al. 1988
Marc Vancanneyt
J MENGAUD
Ilse Cleenwerck
Katrien Vanhonacker
Bart Hoste
Peter Dawyndt
MC DEGIVRY
D RINGUET
Daniëlle Janssens
Jean Swings
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2004
Sliding window discretization: a new method for multiple band matching of bacterial genotyping fingerprints
Brian Austin
Peter Dawyndt
Mats Gyllenberg
Timo Koski
Tatu Lund
Jean Swings
Fabiano L Thompson
A1
Journal Article
in
BULLETIN OF MATHEMATICAL BIOLOGY
2004
Use of recA as an alternative phylogenetic marker in the family Vibrionaceae
CC THOMPSON
FL THOMPSON
Katrien Vandemeulebroecke
Bart Hoste
Peter Dawyndt
Jean Swings
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2004
2002
A fast algorithm to generate a min-transitive opening of a similarity relation.
Peter Dawyndt
Hans De Meyer
Bernard De Baets
Jean Swings
C1
Conference
2002
Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes.
Stefanie Van Trappen
Joris Mergaert
Sylvie Van Eygen
Peter Dawyndt
Margo Cnockaert
Jean Swings
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2002
New methods for the analysis of binarized BIOLOG GN data of vibrio species: Minimization of stochastic complexity and cumulative classification.
M GYLLENBERG
T KOSKI
Peter Dawyndt
T LUND
F THOMPSON
B AUSTIN
Jean Swings
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2002