Research Explorer

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Researcher

Peter Dawyndt

Publications & Research Data

Awards & Distinctions

128 Results

2025

Are LLMs good at answering student questions in CS1 courses?

Thomas Van MullemBart MesuerePeter Dawyndt

Direct construction of sparse suffix arrays with Libsais

Simon Van de VyverTibo Vande MoortelePeter DawyndtBart MesuerePieter Verschaffelt

A1 Journal Article in BMC BIOINFORMATICS

Direct construction of sparse suffix arrays with Libsais

Simon Van de VyverTibo Vande MoortelePeter DawyndtBart MesuerePieter Verschaffelt

Dolos : source code similarity detection

Rien MaertensPeter DawyndtBart Mesuere

Foundations for constrained debugging techniques : finding software faults in constrained environments with sound out-of-place and multiverse debugging techniques

Tom LauwaertsChristophe ScholliersPeter Dawyndt

PathwayPilot : a user-friendly tool for visualizing and navigating metabolic pathways

Tibo Vande MoortelePieter VerschaffeltQingyao HuangNadezhda T. DonchevaTanja HolsteinCaroline JachmannPeter DawyndtLennart MartensBart MesuereTim Van Den Bossche

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Source code plagiarism detection as a service with Dolos

Rien MaertensPeter DawyndtBart Mesuere

StrainInfo : the central database for linked microbial strain identifiers

Artur LissinIsabel SchoberJulius F WitteHelko LükenAdam PodstawkaJulia KoblitzBoyke BunkPeter DawyndtPeter VandammePaul De Vos et al.

A1 Journal Article in DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

Unipept in 2024 : expanding metaproteomics analysis with support for missed cleavages and semitryptic and nontryptic peptides

Tibo Vande MoorteleBram DevlaminckSimon Van de VyverTim Van Den BosscheLennart MartensPeter DawyndtBart MesuerePieter Verschaffelt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2024

Biodiversity analysis of metaproteomics samples with Unipept : a comprehensive tutorial

Tim Van Den BosschePieter VerschaffeltTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

Bookchapter in Protein bioinformatics

Blink : an educational software debugger for Scratch

Niko StrijbolRobbe De ProftKlaas GoethalsBart MesuerePeter DawyndtChristophe Scholliers

A1 Journal Article in SOFTWAREX

Discovering and exploring cases of educational source code plagiarism with Dolos

Rien MaertensMaarten Van NeyghemMaxiem GeldhofCharlotte Van PetegemNiko StrijbolPeter DawyndtBart Mesuere

A1 Journal Article in SOFTWAREX

Dodona : improving programming education through automated assessment, learning analytics, and educational data mining

Charlotte Van PetegemPeter DawyndtBart MesuereBram De Wever

Educational software testing for textual and block-based programming languages

Niko StrijbolPeter DawyndtChristophe ScholliersBart Mesuere

Reproducing predictive learning analytics in CS1 : toward generalizable and explainable models for enhancing student retention

Denis ZhidkikhVille HeilalaCharlotte Van PetegemPeter DawyndtMiitta JärvinenSami ViitanenBram De WeverBart MesuereVesa LappalainenLauri Kettunen et al.

A2 Journal Article in JOURNAL OF LEARNING ANALYTICS

2023

Blink : an educational software debugger for Scratch

Niko StrijbolChristophe ScholliersPeter Dawyndt

Building the Unipept Ecosystem : empowering high-throughput metaproteomics data analysis for characterizing complex microbial communities

Pieter VerschaffeltPeter DawyndtLennart MartensBart Mesuere

Dodona : learn to code with a virtual co-teacher that supports active learning

Charlotte Van PetegemRien MaertensNiko StrijbolJorg Van RenterghemFelix Van der JeugtBram De WeverPeter DawyndtBart Mesuere

A1 Journal Article in SOFTWAREX

Dodona : learn to code with a virtual co-teacher that supports active learning

Charlotte Van PetegemPeter DawyndtBart Mesuere

Dolos 2.0 : towards seamless source code plagiarism detection in online learning environments

Rien MaertensPeter DawyndtBart Mesuere

Dolos — Source Code Plagiarism Detection System

Rien MaertensCharlotte Van PetegemNiko StrijbolToon BaeyensArne Carla JacobsPeter DawyndtBart Mesuere

TESTed : an educational testing framework with language-agnostic test suites for programming exercises

Niko StrijbolCharlotte Van PetegemRien MaertensBoris SelsChristophe ScholliersPeter DawyndtBart Mesuere

A1 Journal Article in SOFTWAREX

Unipept Desktop 2.0 : construction of targeted reference protein databases for metaproteogenomics analyses

Pieter VerschaffeltAlessandro TancaMarcello AbbondioTim Van Den BosscheTibo Vande MoortelePeter DawyndtLennart MartensBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2022

Dolos : language‐agnostic plagiarism detection in source code

Rien MaertensCharlotte Van PetegemNiko StrijbolToon BaeyensArne JacobsPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF COMPUTER ASSISTED LEARNING

FragGeneScanRs : faster gene prediction for short reads

Felix Van der JeugtPeter DawyndtBart Mesuere

A1 Journal Article in BMC BIOINFORMATICS

Pass/fail prediction in programming courses

Charlotte Van PetegemLouise DeconinckDieter MourisseRien MaertensNiko StrijbolBart DhoedtBram De WeverPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF EDUCATIONAL COMPUTING RESEARCH

Stack Mapping Anchor Points (SMAP) : a versatile suite of tools for read-backed haplotyping

Dries SchaumontElisabeth VeeckmanFelix Van der JeugtAnnelies HaegemanSabine Van GlabekeYves BawinJoanna LukasiewiczSebastien BlugeonPhilippe BarreMaria de la O Leyva-Pérez et al.

The unipept metagenomics analysis pipeline

Felix Van der JeugtPeter DawyndtBart Mesuere

UMGAP : the Unipept MetaGenomics analysis pipeline

Felix Van der JeugtRien MaertensAranka SteyaertPieter VerschaffeltCaroline De TenderPeter DawyndtBart Mesuere

A1 Journal Article in BMC GENOMICS

Unipept visualizations : an interactive visualization library for biological data

Pieter VerschaffeltJames CollierAlexander BotzkiLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in BIOINFORMATICS

2021

Chitin in strawberry cultivation : foliar growth and defense response promotion, but reduced fruit yield and disease resistance by nutrient imbalances

Caroline De TenderBart VandecasteeleBruno VerstraetenSarah OmmeslagTim De MeyerJill De VisscherPeter DawyndtLieven ClementTina KyndtJane Debode

A1 Journal Article in MOLECULAR PLANT-MICROBE INTERACTIONS

Unipept Desktop : a faster, more powerful metaproteomics results analysis tool

Pieter VerschaffeltTim Van Den BosscheLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2020

Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis

Tim Van Den BosschePieter VerschaffeltKay SchallertHarald BarsnesPeter DawyndtDirk BenndorfBernhard Y. RenardBart MesuereLennart MartensThilo Muth

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Unipept CLI 2.0 : adding support for visualizations and functional annotations

Pieter VerschaffeltPhilippe Van ThienenTim Van Den BosscheFelix Van der JeugtCaroline De TenderLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in BIOINFORMATICS

2019

A method for comprehensive proteomic analysis of human faecal samples to investigate gut dysbiosis in patients with cystic fibrosis

Griet DebyserMaarten AertsPieter Van HeckeBart MesuereGwen DuytschaeverPeter DawyndtKris De BoeckPeter VandammeBart Devreese

A1 Journal Article in ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY

Development of genomic resources for perennial ryegrass

Elisabeth VeeckmanKlaas VandepoeleTom RuttinkPeter Dawyndt

Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data

Charles DumolinMaarten AertsBart VerheydeSimon SchellaertTim VandammeFelix Van der JeugtEvelien De CanckMargo CnockaertAnneleen WiemeIlse Cleenwerck et al.

A1 Journal Article in MSYSTEMS

Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome

Caroline De TenderBart MesuereFelix Van der JeugtA HaegemanTom RuttinkB VandecasteelePeter DawyndtJ DebodeEE Kuramae

A1 Journal Article in SCIENTIFIC REPORTS

Unipept 4.0 : functional analysis of metaproteome data

Robbert Gurdeep SinghAlessandro TancaAntonio PalombaFelix Van der JeugtPieter VerschaffeltSergio UzzauLennart MartensPeter DawyndtBart Mesuere

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2018

High-throughput metaproteomics data analysis with Unipept : a tutorial

Bart MesuereFelix Van der JeugtToon WillemsTom NaessensBart DevreeseLennart MartensPeter Dawyndt

A1 Journal Article in JOURNAL OF PROTEOMICS

Multifunctional sequence-defined macromolecules for chemical data storage

Steven MartensAnnelies LanduytPieter EspeelBart DevreesePeter DawyndtFilip Du Prez

A1 Journal Article in NATURE COMMUNICATIONS

2017

Microbial community analysis in soil (rhizosphere) and the marine (plastisphere) environment in function of plant health and biofilm formation

Caroline De TenderPeter DawyndtMartine MaesLisa Devriese

Temporal dynamics of bacterial and fungal colonization on plastic debris in the North Sea

Caroline De TenderLisa I DevrieseAnnelies HaegemanSara MaesJürgen VangeyteAndré CattrijssePeter DawyndtTom Ruttink

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

2016

Biological, physicochemical and plant health responses in lettuce and strawberry in soil or peat amended with biochar

Caroline De TenderJane DebodeBart VandecasteeleTommy D’HosePieter CremelieAnnelies HaegemanTom RuttinkPeter DawyndtMartine Maes

A1 Journal Article in APPLIED SOIL ECOLOGY

Dynamics in the strawberry rhizosphere microbiome in response to biochar and Botrytis cinerea leaf infection

Caroline De TenderAnnelies HaegemanBart VandecasteeleLieven ClementPieter CremeliePeter DawyndtMartine MaesJane Debode

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Faecal proteomics : a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis

Griet DebyserBart MesuereLieven ClementJens Van de WeygaertPieter Van HeckeGwen DuytschaeverMaarten AertsPeter DawyndtKris De BoeckPeter Vandamme et al.

A1 Journal Article in JOURNAL OF CYSTIC FIBROSIS

Global alternans instability and its effect on non-linear wave propagation : dynamical Wenckebach block and self terminating spiral waves

Nele VandersickelArne DefauwPeter DawyndtAlexander Panfilov

A1 Journal Article in SCIENTIFIC REPORTS

The unique peptidome : taxon-specific tryptic peptides as biomarkers for targeted metaproteomics

Bart MesuereFelix Van der JeugtBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in PROTEOMICS

Unipept web services for metaproteomics analysis

Bart MesuereToon WillemsFelix Van der JeugtBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in BIOINFORMATICS

Unipept: computational exploration of metaproteome data

Bart MesuerePeter Dawyndt

2015

A cross-sectional and longitudinal metaproteomics approach reveals intestinal dysbiosis, and the presence of markers of chronic inflammation and mucus-related proteins in faecal samples of patients with cystic fibrosis

Griet DebyserBart MesuereJens Van de WeygaertLieven ClementMaarten AertsGwen DuytschaeverPeter DawyndtK De BoeckPeter VandammeBart Devreese

A long fragment aligner called ALFALFA

Michaël VyvermanBernard De BaetsVeerle FackPeter Dawyndt

A1 Journal Article in BMC BIOINFORMATICS

Bacterial community profiling of plastic litter in the Belgian part of the North Sea

Caroline De TenderLisa I DevrieseAnnelies HaegemanSara MaesTom RuttinkPeter Dawyndt

A1 Journal Article in ENVIRONMENTAL SCIENCE & TECHNOLOGY

Human heart heterogeneity and its role in the onset and perpetuation of cardiac arrhythmias

Arne DefauwAlexander PanfilovPeter Dawyndt

The Unipept metaproteomics analysis pipeline

Bart MesuereGriet DebyserMaarten AertsBart DevreesePeter VandammePeter Dawyndt

A1 Journal Article in PROTEOMICS

2014

ALFALFA : fast and accurate mapping of long next generation sequencing reads

Michaël VyvermanPeter DawyndtBernard De BaetsVeerle Fack

Fast and accurate cDNA mapping and splice site identification

Michaël VyvermanDieter De SmedtYao-Cheng LinLieven SterckBernard De BaetsVeerle FackPeter Dawyndt

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

Nikos C KyrpidesPhilip HugenholtzJonathan A EisenTanja WoykeMarkus GökerCharles T ParkerRudolf AmannBrian J BeckPatrick SG ChainJongsik Chun et al.

Editorial material

Genomic Standards Consortium projects

Dawn FieldPeter SterkRenzo KottmannWim De SmetLinda Amaral-ZettlerGuy CochraneJames R ColeNeil DaviesPeter DawyndtGeorge M Garrity et al.

A1 Journal Article in STANDARDS IN GENOMIC SCIENCES

Genomic taxonomy and biodiversity of the Burkholderia cepacia complex

Peter VandammeBart VerheydeCharlotte PeetersPeter Dawyndt

Bookchapter in Burkholderia : from genomes to function

Small size ionic heterogeneities in the human heart can attract rotors

Arne DefauwNele VandersickelPeter DawyndtAlexander Panfilov

A1 Journal Article in AMERICAN JOURNAL OF PHYSIOLOGY-HEART AND CIRCULATORY PHYSIOLOGY

StrainInfo introduces electronic passports for microorganisms

Bert VerslyppeWim De SmetBernard De BaetsPaul De VosPeter Dawyndt

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

2013

Action potential duration heterogeneity of cardiac tissue can be evaluated from cell properties using Gaussian Green's function approach

Arne DefauwIvan KazbanovHans DierckxPeter DawyndtAlexander Panfilov

A1 Journal Article in PLOS ONE

essaMEM: finding maximal exact matches using enhanced sparse suffix arrays

Michaël VyvermanBernard De BaetsVeerle FackPeter Dawyndt

A1 Journal Article in BIOINFORMATICS

Explicit sequence-culture-strain-taxon links in StrainInfo and their role in quality assessment and assurance

Wim De SmetPeter DawyndtBernard De BaetsPaul De Vos

Filtering and ranking techniques for automated selection of high-quality 16S rRNA gene sequences

Wim De SmetKarel De LoofPaul De VosPeter DawyndtBernard De Baets

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Initiation and dynamics of a spiral wave around an ionic heterogeneity in a model for human cardiac tissue

Arne DefauwPeter DawyndtAlexander Panfilov

A1 Journal Article in PHYSICAL REVIEW E

2012

A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients

Griet DebyserBart MesuerePeter DawyndtPeter VandammeBart Devreese

A shotgun metaproteomics approach to study the microbiome of cystic fibrosis (CF) patients

Griet DebyserBart MesuerePeter DawyndtPeter VandammeBart Devreese

Prospects and limitations of full-text index structures in genome analysis

Michaël VyvermanBernard De BaetsVeerle FackPeter Dawyndt

A1 Journal Article in NUCLEIC ACIDS RESEARCH

RCN4GSC meeting report : initiating a testbed for managing data at the interface of biodiversity and genomics/metagenomics, May 2011

Robert J. RobbinsJames BeachStan BlumPeter DawyndtJohn DeckRenzo KottmannNorman MorrisonÉamonn Ó TuamaInigo San GilDavid Vieglas et al.

A1 Journal Article in STANDARDS IN GENOMIC SCIENCES

RCN4GSC workshop report : modeling a testbed for managing data at the interface of biodiversity and (meta)genomics, April 2011

Robert J. RobbinsGuy CochraneNeil DaviesPeter DawyndtRenzo KottmannLeonard (Kris) KrishtalkaNorman MorrisonÉamonn Ó TuamaInigo San GilJohn Wooley

A1 Journal Article in STANDARDS IN GENOMIC SCIENCES

StrainInfo : from microbial information to microbiological knowledge

Bert VerslyppePeter DawyndtBernard De BaetsPaul De Vos

Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples

Bart MesuereBart DevreeseGriet DebyserMaarten AertsPeter VandammePeter Dawyndt

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2011

Accurate long read mapping using enhanced suffix arrays

Michaël VyvermanJoachim De SchrijverWim Van CriekingePeter DawyndtVeerle Fack

Classification and identification of the Burkholderia cepacia complex: past, present and future

Peter VandammePeter Dawyndt

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Data shopping in an open marketplace: introducing the Ontogrator web application for marking up data using ontologies and browsing using facets

Norman MorrisonDavid HancockLynette HirschmanPeter DawyndtBert VerslyppeNikos KyrpidesRenzo KottmannPelin YilmazFrank Oliver GlöcknerJeff Grethe et al.

A1 Journal Article in STANDARDS IN GENOMIC SCIENCES

Make Histri: reconstructing the exchange history of bacterial and archaeal type strains

Bert VerslyppeWim De SmetBernard De BaetsPaul De VosPeter Dawyndt

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Pelin YilmazRenzo KottmannDawn FieldRob KnightJames R ColeLinda Amaral-ZettlerJack A GilbertIlene Karsch-MizrachiAnjanette JohnstonGuy Cochrane et al.

A1 Journal Article in NATURE BIOTECHNOLOGY

The Genomic Standards Consortium

Dawn FieldLinda Amaral-ZettlerGuy CochraneJames R ColePeter DawyndtGeorge M GarrityJack GilbertFrank Oliver GlöcknerLynette HirschmanIlene Karsch-Mizrachi et al.

Editorial material

2010

Accurate long read mapping using enhanced suffix arrays

Michaël VyvermanJoachim De SchrijverWim Van CriekingePeter DawyndtVeerle Fack

Análisis de Pseudomonas fitopatógenas usando métodos inteligentes de aprendizaje un enfoque general sobre taxonomía y análisis de ácidos grasos dentro del género Pseudomonas

Bram SlabbinckBernard De BaetsPeter DawyndtPaul De Vos

A2 Journal Article in REVISTA MEXICANA DE FITOPATOLOGIA

From learning taxonomies to phylogenetic learning: integration of 16S rRNA gene data into FAME-based bacterial classification

Bram SlabbinckWillem WaegemanPeter DawyndtPaul De VosBernard De Baets

A1 Journal Article in BMC BIOINFORMATICS

Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons

Bert VerslyppeRenzo KottmannWim De SmetBernard De BaetsPaul De VosPeter Dawyndt

A1 Journal Article in RESEARCH IN MICROBIOLOGY

Screening for taxon-specific peptides using dynamic index structures

Bart MesuereGriet DebyserPeter VandammeBart DevreesePeter Dawyndt

Semantic integration of isolation habitat and location in StrainInfo

Bert VerslyppeWim De SmetPaul De VosBernard De BaetsPeter Dawyndt

2009

Bayesian clustering of fuzzy feature vectors using a quasi-likelihood approach

Pekka MarttinenJing TangBernard De BaetsPeter DawyndtJukka Corander

A1 Journal Article in IEEE Transactions on Pattern Analysis and Machine Intelligence

From learning taxonomies to phylogenetic learning: a computational approach to FAME-based bacterial species identification

Bram SlabbinckBernard De BaetsPaul De VosPeter Dawyndt

Machine learning algorithms for coupling FAME and 16S rRNA data in bacterial species identification

Dries Van AudenhoveWillem WaegemanBram SlabbinckPeter DawyndtBernard De Baets

Towards large-scale FAME-based bacterial species identification using machine learning techniques

Bram SlabbinckBernard De BaetsPeter DawyndtPaul De Vos

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

2008

Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)

Miet MartensPeter DawyndtRenata CoopmanMonique GillisPaul De VosAnne Willems

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ecological diversification in the Bacillus cereus Group

MH GUINEBRETIEREFL THOMPSONA SOROKINP NORMANDPeter DawyndtM EHLING-SCHULZB SVENSSONV SANCHISC NGUYEN-THEMarc Heyndrickx et al.

A1 Journal Article in ENVIRONMENTAL MICROBIOLOGY

Genus-wide Bacillus species identification through proper artificial neural network experiments on fatty acid profiles

Bram SlabbinckBernard De BaetsPeter DawyndtPaul De Vos

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Laying the foundation for a genomic rosetta stone: Creating information hubs through the use of consensus identifiers

Bart Van BrabantT GRAYBert VerslyppeN KYRPIDESK DIETRICHFO GLOCKNERJ COLER FARRISLM SCHRIMLPaul De Vos et al.

A1 Journal Article in OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complex

Elke VanlaereKjell SergeantPeter DawyndtW KALLOWM ERHARDH SUTTOND DAREBart DevreeseBart SamynPeter Vandamme

A1 Journal Article in JOURNAL OF MICROBIOLOGICAL METHODS

StrainInfo.net Web services: enabling microbiologic workflows such as phylogenetic tree building and biomarker comparison

Bert VerslyppeBram SlabbinckWim De SmetPaul De VosBernard De BaetsPeter Dawyndt

TaxonGap: a visualization tool for intra- and inter-species variation among individual biomarkers

Bram SlabbinckPeter DawyndtM MARTENSPaul De VosBernard De Baets

A1 Journal Article in BIOINFORMATICS

The minimum information about a genome sequence (MIGS) specification

D FIELDG GARRITYT GRAYN MORRISONJ SELENGUTP STERKT TATUSOVAN THOMSONMJ ALLENSV ANGIUOLI et al.

A1 Journal Article in NATURE BIOTECHNOLOGY

2007

Genus-wide Bacillus species classification based on FAME profiles

Bram SlabbinckBernard De BaetsPeter DawyndtPaul De Vos

Identification of lactobacilli by pheS and rpoA gene sequence analyses

Sabri NaserPeter DawyndtBart HosteDirk GeversKatrien VandemeulebroeckeIlse CleenwerckMarc VancanneytJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2006

A knuckles-and-nodes approach to the integration of microbiological resource data

Bart Van BrabantPeter DawyndtBernard De BaetsPaul De Vos

FAME-based Bacillus Species Identification using Artificial Neural Networks

Bram SlabbinckPeter DawyndtBernard De BaetsPaul De Vos

Larkinella insperata gen. nov., sp nov., a bacterium of the phylum 'Bacteroidetes' isolated from water of a steam generator

Marc VancanneytOI NEDASHKOVSKAYACindy SnauwaertStefanie MortierKatrien VandemeulebroeckeBart HostePeter DawyndtGM FROLOVADaniëlle JanssensJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mining fatty acid databases for detection of novel compounds in aerobic bacteria

Peter DawyndtMarc VancanneytCindy SnauwaertBernard De BaetsHans De MeyerJean Swings

A1 Journal Article in JOURNAL OF MICROBIOLOGICAL METHODS

Raman microspectroscopy as an identification tool within the phylogenetically homogeneous 'Bacillus subtilis'-group

Didier HutsebautJoachim VandroemmeJeroen HeyrmanPeter DawyndtPeter VandenabeeleLuc MoensPaul De Vos

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Stepping stones towards a new prokaryotic taxonomy

Dirk GeversPeter DawyndtPeter VandammeAnne WillemsMarc VancanneytJean SwingsPaul De Vos

A1 Journal Article in PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

UPGMA clustering revisited: A weight-driven approach to transitive approximation

Peter DawyndtHans De MeyerBernard De Baets

A1 Journal Article in INTERNATIONAL JOURNAL OF APPROXIMATE REASONING

2005

Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes

Sabri NaserFL THOMPSONBart HosteDirk GeversPeter DawyndtMarc VancanneytJean Swings

A1 Journal Article in MICROBIOLOGY-SGM

Application of sliding-window discretization and minimization of stochastic complexity for the analysis of fAFLP genotyping fingerprint patterns of Vibrionaceae

Peter DawyndtFL THOMPSONB AUSTINJean SwingsT KOSKIM GYLLENBERG

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Grouping of streptomycetes using 16S-ITS RFLP fingerprinting

Benjamin LanootMarc VancanneytBart HosteKatrien VandemeulebroeckeMargo CnockaertPeter DawyndtZH LIUY HUANGJean Swings

A1 Journal Article in RESEARCH IN MICROBIOLOGY

Improving interoperability between microbial information and sequence databases

P ROMANOPeter DawyndtF PIERSIGILLIJean Swings

A1 Journal Article in BMC BIOINFORMATICS

Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources

Peter DawyndtMarc VancanneytHans De MeyerJean Swings

A1 Journal Article in IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Molecular characterization, technological properties and safety aspects of enterococci from 'Hussuwa', an African fermented sorghum product

NMK YOUSIFPeter DawyndtH ABRIOUELA WIJAYAU SCHILLINGERMarc VancanneytJean SwingsHA DIRARWH HOLZAPFELCMAP FRANZ

A1 Journal Article in JOURNAL OF APPLIED MICROBIOLOGY

Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis

FL THOMPSONDirk GeversCC THOMPSONPeter DawyndtSabri NaserBart HosteCB MUNNJean Swings

A1 Journal Article in APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Reclassification of [Cytophaga] marinoflava Relchenbach 1989 as Leeuwenhoekiella marinoflava gen. nov., comb. nov and description of Leeuwenhoekiella aequorea sp nov

OI NEDASHKOVSKAYAMarc VancanneytPeter DawyndtKatrien EngelbeenKatrien VandemeulebroeckeIlse CleenwerckBart HosteJ MERGAERTTL TANGM FROLOVA et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Staphylococcus pseudintermedius sp nov., a coagulase-positive species from animals

Luc DevrieseMarc VancanneytMargo BaeleMario VaneechoutteEvelyne De GraefCindy SnauwaertIlse CleenwerckPeter DawyndtJean SwingsAnnemie Decostere et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The complete linkage clustering algorithm revisited

Peter DawyndtHans De MeyerBernard De Baets

A1 Journal Article in SOFT COMPUTING

2004

BOX-PCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S-fradiae, S-tricolor, S-colombiensis, S-filamentosus, S-vinaceus and S-phaeopurpureus

Benjamin LanootMarc VancanneytPeter DawyndtMargo CnockaertJL ZHANGY HUANGZH LIUJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Knowledge Accumulation of Microbial Data Aiming at a Dynamic Taxonomic Framework

Peter DawyndtH De MeyerJ Swings

On the integration of microbial information

Peter DawyndtMarc VancanneytJean Swings

A4 Journal Article in WFCC NEWSLETTER

On the min-transitive approximation of symmetric fuzzy relations

Peter DawyndtHans De MeyerBernard De Baets

On the min-transitive approximation of symmetric fuzzy relations

Peter DawyndtHans De MeyerBernard De Baets

Reclassification of Lactobacillus kefirgranum Takizawa et al. 1994 as Lactobacillus kefiranofaciens subsp kefirgranum subsp nov and emended description of L-kefiranofaciens Fujisawa et al. 1988

Marc VancanneytJ MENGAUDIlse CleenwerckKatrien VanhonackerBart HostePeter DawyndtMC DEGIVRYD RINGUETDaniëlle JanssensJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Sliding window discretization: a new method for multiple band matching of bacterial genotyping fingerprints

Brian AustinPeter DawyndtMats GyllenbergTimo KoskiTatu LundJean SwingsFabiano L Thompson

A1 Journal Article in BULLETIN OF MATHEMATICAL BIOLOGY

Use of recA as an alternative phylogenetic marker in the family Vibrionaceae

CC THOMPSONFL THOMPSONKatrien VandemeulebroeckeBart HostePeter DawyndtJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2002

A fast algorithm to generate a min-transitive opening of a similarity relation.

Peter DawyndtHans De MeyerBernard De BaetsJean Swings

Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes.

Stefanie Van TrappenJoris MergaertSylvie Van EygenPeter DawyndtMargo CnockaertJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

New methods for the analysis of binarized BIOLOG GN data of vibrio species: Minimization of stochastic complexity and cumulative classification.

M GYLLENBERGT KOSKIPeter DawyndtT LUNDF THOMPSONB AUSTINJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY