Research Explorer

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Researcher

Pablo Vangeenderhuysen

Publications & Research Data

Awards & Distinctions

31 Results

2025

A repository of the salivary metabolome and its key drivers in 1436 European children

Ellen De PaepeEmile CallemeynKimberly De WindtKathleen WijnantVera PlekhovaBeata PomianPablo VangeenderhuysenStefaan De HenauwNathalie MichelsHeli Viljakainen et al.

A1 Journal Article in EBIOMEDICINE

Automated integration and quality assessment of chromatographic peaks in LC-MS data using TARDIS

Pablo VangeenderhuysenMatthijs VynckBeata PomianKimberly De WindtEmile CallemeynEllen De PaepeLindsey De CommerJeroen RaesTim NawrotJohannes Rainer et al.

Automated integration and quality assessment of chromatographic peaks in LC–MS-based metabolomics and lipidomics using TARDIS

Pablo VangeenderhuysenMatthijs VynckBeata PomianKimberly De WindtEmile CallemeynEllen De PaepeLindsey De CommerJeroen RaesTim NawrotJohannes Rainer et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

Development of a fit-for-purpose data preprocessing workflow for untargeted DNA adductomics in exposomics research

Pablo VangeenderhuysenMatthijs VynckLiesa EngelenAdrian CovaciTim NawrotLynn VanhaeckeLieselot Hemeryck

Exploring the salivary metabolome : key drivers and insights from 1,436 European children

Emile CallemeynEllen De PaepeLynn VanhaeckeVera PlekhovaKimberly De WindtMatthijs VynckPablo VangeenderhuysenNathalie MichelsAnja Geerts

LC-MS in the age of omics : development of open-source software and optimized data-analysis strategies

Pablo VangeenderhuysenLynn VanhaeckeLieselot HemeryckMatthijs Vynck

Robust metabolomics data normalization across scales and experimental designs

Matthijs VynckPablo VangeenderhuysenEllen De PaepeTim NawrotVera PlekhovaLynn Vanhaecke

The pediatric salivary metabolome : non-invasive insights into key drivers across 1,436 children

Emile CallemeynEllen De PaepeKimberly De WindtVera PlekhovaPablo VangeenderhuysenNathalie MichelsAnja GeertsMatthijs VynckLynn Vanhaecke

Toward automated preprocessing of untargeted LC-MS-based metabolomics feature lists from human biofluids

Amy HughesPablo VangeenderhuysenMarilyn De GraeveBeata PomianTim S. NawrotJeroen RaesSimon J. S. CameronLynn Vanhaecke

A1 Journal Article in ANALYTICAL CHEMISTRY

Towards automated integration and quality assessment of chromatographic peaks in targeted LC-MS data with TARDIS

Pablo VangeenderhuysenMatthijs VynckBeata PomianKimberly De WindtEmile CallemeynEllen De PaepeLindsey De CommerJeroen RaesTim MawrotJohannes Rainer et al.

Towards enhanced reproducibility and performance of quality control sample-based normalization : key issues and new ideas

Matthijs VynckPablo VangeenderhuysenEllen De PaepeLieselot HemeryckVera PlekhovaLynn Vanhaecke

2024

A lock mass-independent workflow for comprehensive untargeted processing and mass realignment of AIMS data

Nicolas de FoozMarilyn De GraeveVera PlekhovaPablo VangeenderhuysenSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

An open software development-based ecosystem of R packages for metabolomics data analysis

Johannes RainerPhilippine LouailAndrea ViciniRoger GineJosep M BadiaMichele StravsMar Garcia-AloyCarolin HuberLiesa SalzerJan Stanstrup et al.

Determining the drivers of pediatric overweight and obesity : how does the salivary metabolome reflect children’s anthropometrics and dietary intake?

Emile CallemeynEllen De PaepePablo VangeenderhuysenNathalie MichelsStefaan De HenauwAnja GeertsLynn Vanhaecke

Determining the main drivers of childhood overweight and obesity using salivary metabolomics

Ellen De PaepeMarilyn De GraeveEmile CallemeynKathleen WijnantPablo VangeenderhuysenVera PlekhovaStefaan De HenauwNathalie MichelsMarja H. LeppänenTimo Lakka et al.

Determining the main drivers of childhood overweight and obesity with the salivary metabolome

Ellen De PaepeMarilyn De GraeveEmile CallemeynKathleen WijnantPablo VangeenderhuysenVera PlekhovaStefaan De HenauwNathalie MichelsMarja H. LeppänenTimo Lakka et al.

Integrated gut metabolome and microbiome fingerprinting reveals that dysbiosis precedes allergic inflammation in IgE-mediated pediatric cow's milk allergy

Ellen De PaepeVera PlekhovaPablo VangeenderhuysenNele BaeckDominique BullensTania ClaeysMarilyn De GraeveKristien KamoenAnneleen NotebaertTom Van de Wiele et al.

A1 Journal Article in ALLERGY

Optimisation and application of a data (pre)processing strategy for large-scale DNA adductomics in exposomics studies

Pablo VangeenderhuysenMarilyn De GraeveTrancizeo LipengaValerie McCormackTess GoessensThomas Van HeckeLiesa EngelenGiulia PomaStefaan De SmetSarah De Saeger et al.

Optimisation and application of a data analysis strategy for large-scale DNA adductomics

Pablo VangeenderhuysenTim NawrotLiesa EngelenGiulia PomaAdrian CovaciLynn VanhaeckeLieselot Hemeryck

T.A.R.D.I.S. : targeted analysis and raw data integration in mass spectrometry

Pablo Vangeenderhuysen

T.A.R.D.I.S. : Targeted Analysis and Raw Data Integration in Mass Spectrometry

Pablo VangeenderhuysenBeata PomianKimberly De WindtEmile CallemeynEllen De PaepeLieselot HemeryckLynn Vanhaecke

2023

Advancing ambient ionisation mass spectrometry towards at-line microbial fermentation monitoring

Nicolas de FoozMarilyn De GraevePablo VangeenderhuysenKarolien MaesSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

Dual UHPLC-HRMS metabolomics and lipidomics and automated data processing workflow for comprehensive high-throughput gut phenotyping

Pablo VangeenderhuysenJasmien van ArnhemBeata PomianMarilyn De GraeveL. De CommerG. FalonyJ. RaesA. ZhernakovaJ. FuLieselot Hemeryck et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

Dual UHPLC-HRMS-based fecal metabolomics and lipidomics followed by semi-automated data processing for comprehensive gut phenotyping

Pablo VangeenderhuysenBeata PomianMarilyn De GraeveLindsay De CommerGwen FalonyJeroen RaesAlexandra ZhernakovaJingyuan FuLieselot HemeryckLynn Vanhaecke

Integrated gut metabolome and microbiome fingerprinting reveals that dysbiosis precedes allergic inflammation in IgE-mediated pediatric cow’s milk allergy

Ellen De PaepeVera PlekhovaPablo VangeenderhuysenLars VereeckeMyriam Van WinckelMarilyn De GraeveTom Van de WieleEric CoxLynn Vanhaecke

T.A.R.D.I.S. : Targeted Analysis and Raw Data Integration in Mass Spectrometry

Pablo VangeenderhuysenBeata PomianMarilyn De GraeveLieselot HemeryckLynn Vanhaecke

Universal at-line microbial fermentation monitoring through advances in rapid ambient ionisation mass spectrometry-based metabolomics

Nicolas de FoozMarilyn De GraevePablo VangeenderhuysenKarolien MaesSophie RoelantsSofie De MaeseneireWim SoetaertLynn Vanhaecke

Unraveling biomarkers of exposure for tenuazonic acid through urinary metabolomics

Lia VisintinMaría García NicolásPablo VangeenderhuysenTess GoessensEugenio AlladioBeata PomianLynn VanhaeckeSarah De SaegerMarthe De Boevre

A1 Journal Article in FOOD AND CHEMICAL TOXICOLOGY

2022

Integrating gut metabolomics and microbiomics towards biomarker discovery in pediatric cow’s milk allergy

Pablo VangeenderhuysenEllen De PaepeLieselot HemeryckMarilyn De GraeveLynn Vanhaecke

Integrating gut metabolomics and microbiomics towards biomarker discovery in pediatric cow’s milk allergy

Pablo VangeenderhuysenEllen De PaepeLieselot HemeryckMarilyn De GraeveLynn Vanhaecke

Multi-omics data integration in pediatric cow’s milk allergy using DIABLO

Pablo VangeenderhuysenEllen De PaepeLieselot HemeryckMarilyn De GraeveLynn Vanhaecke