Research Explorer

Your browser does not support JavaScript or JavaScript is not enabled. Without JavaScript some functions of this webapplication may be disabled or cause error messages. To enable JavaScript, please consult the manual of your browser or contact your system administrator.

Researcher

Niels Hulstaert

Awards & Distinctions

19 Results

2021

DeepLC can predict retention times for peptides that carry as-yet unseen modifications

Robbin BouwmeesterRalf GabrielsNiels HulstaertLennart MartensSven Degroeve

A1 Journal Article in NATURE METHODS

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane BoonePathmanaban RamasamyJasper ZuallaertRobbin BouwmeesterBerre Van MoerDavy MaddeleinDemet TuranNiels HulstaertHannah EeckhautElien Vandermarliere et al.

A1 Journal Article in NATURE COMMUNICATIONS

2020

COSS : a fast and user-friendly tool for spectral library searching

Genet Abay ShiferawElien VandermarliereNiels HulstaertRalf GabrielsLennart MartensPieter-Jan Volders

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Scop3P : a comprehensive resource of human phosphosites within their full context

Pathmanaban RamasamyDemet TuranNatalia TichshenkoNiels HulstaertElien VandermarliereWim VrankenLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

ThermoRawFileParser : modular, scalable and cross-platform RAW file conversion

Niels HulstaertJim ShofstahlTimo SachsenbergMathias WalzerHarald BarsnesLennart MartensYasset Perez-Riverol

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2017

Perspective: Essential study quality descriptors for data from nutritional epidemiologic research

Chen YangMariona PinartPatrick KolsterenJohn Van CampNathalie De CockKatharina NimptschTobias PischonEamon LairdGiuditta PerozziRaffaella Canali et al.

A1 Journal Article in ADVANCES IN NUTRITION

2016

A pipeline for differential proteomics in unsequenced species

Sule Yilmaz-RumpfBjorn VictorNiels HulstaertElien VandermarliereHarald BarsnesSven DegroeveSurya GuptaAdriaan StickerSarah GabriëlPierre Dorny et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Xilmass: a new approach toward the identification of cross-linked peptides

Sule Yilmaz-RumpfFriedel DrepperNiels HulstaertMaša ČerničKris GevaertAnastassios EconomouBettina WarscheidLennart MartensElien Vandermarliere

A1 Journal Article in ANALYTICAL CHEMISTRY

moFF : a robust and automated approach to extract peptide ion intensities

Andrea ArgentiniLudger GoeminneKenneth VerheggenNiels HulstaertAn StaesLieven ClementLennart Martens

A1 Journal Article in NATURE METHODS

2015

PepShell : visualization of conformational proteomics data

Elien VandermarliereDavy MaddeleinNiels HulstaertElisabeth StesMichela Di MicheleKris GevaertEdgar JacobyDirk BrehmerLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Pladipus enables universal distributed computing in proteomics bioinformatics

Kenneth VerheggenDavy MaddeleinNiels HulstaertLennart MartensHarald BarsnesMarc Vaudel

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

The iceLogo web server and SOAP service for determining protein consensus sequences

Davy MaddeleinNiklaas ColaertIain BuchananNiels HulstaertKris GevaertLennart Martens

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2013

Asn₃, a reliable, robust, and universal lock mass for improved accuracy in LC-MS and LC-MS/MS

An StaesJonathan VandenbusscheHans DemolMarc GoethalsSule Yilmaz-RumpfNiels HulstaertSven DegroevePieter KelchtermansLennart MartensKris Gevaert

A1 Journal Article in ANALYTICAL CHEMISTRY

CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays

Paola MasuzzoNiels HulstaertLynn HuyckChristophe AmpeMarleen Van TroysLennart Martens

A1 Journal Article in BIOINFORMATICS

Pride-asap: automatic fragment ion annotation of identified PRIDE spectra

Niels HulstaertFlorian ReisingerJonathan RamesederHarald BarsnesJuan Antonio VizcaínoLennart Martens

A1 Journal Article in JOURNAL OF PROTEOMICS

The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

Niklaas ColaertDavy MaddeleinFrancis ImpensPetra Van DammeKim PlasmanKenny HelsensNiels HulstaertJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2012

Sigpep: calculating unique peptide signature transition sets in a complete proteome background

Kenny HelsensMichael MuellerNiels HulstaertLennart Martens

A1 Journal Article in PROTEOMICS

The PRoteomics IDEntification (PRIDE) converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium

Richard G CôtéJohannes GrissJosé A DianesRui WangJames C WrightHenk WP van den ToornBas van BreukelenAlbert JR HeckNiels HulstaertLennart Martens et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Towards a human proteomics atlas

Giulia GonnelliNiels HulstaertSven DegroeveLennart Martens

A1 Journal Article in ANALYTICAL AND BIOANALYTICAL CHEMISTRY