Research Explorer

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Researcher

Nicolás Manosalva Pérez

Publications & Research Data

Awards & Distinctions

10 Results

2026

MINI-EX version 2 : cell-type-specific gene regulatory network inference using an integrative single-cell transcriptomics approach

Jasper StautNicolás Manosalva PérezThomas DepuydtKlaas VandepoeleSvitlana Lukicheva

Bookchapter in Plant transcription factors : methods and protocols

2025

A map of integrated cis-regulatory elements enhances gene regulatory analysis in maize

Jasper StautNicolás Manosalva PérezAndres Matres FerrandoIndeewari DissanayakeKlaas Vandepoele

A1 Journal Article in PLANT COMMUNICATIONS

2024

Exploring the cis-regulatory landscape of plants to unravel gene regulatory networks

Nicolás Manosalva PérezKlaas Vandepoele

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva PérezCamilla FerrariJulia EngelhornThomas DepuydtHilde NelissenThomas HartwigKlaas Vandepoele

A1 Journal Article in PLANT JOURNAL

2023

Prediction of transcription factor regulators and gene regulatory networks in tomato using binding site information

Nicolás Manosalva PérezKlaas Vandepoele

Bookchapter in Plant gene regulatory networks : methods and protocols

Rhizogenic agrobacterium protein RolB interacts with the TOPLESS repressor proteins to reprogram plant immunity and development

Lore GryffroyEvi CeulemansNicolás Manosalva PérezJhon Jairo Venegas MolinaAna JaramilloSavio D. RodriguesLiesbeth De MildeVeronique JonckheereMarc Van MontaguBarbara De Coninck et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots

Li LiuMichel HeideckerThomas DepuydtNicolás Manosalva PérezMartin CrespiThomas BleinKlaas Vandepoele

A1 Journal Article in PLANT PHYSIOLOGY

2022

JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles

Jaime A Castro-MondragonRafael Riudavets-PuigIeva RauluseviciuteRoza Berhanu LemmaLaura TurchiRomain Blanc-MathieuJeremy LucasPaul BoddieAziz KhanNicolás Manosalva Pérez et al.

A1 Journal Article in NUCLEIC ACIDS RESEARCH

MINI-EX : integrative inference of single-cell gene regulatory networks in plants

Camilla FerrariNicolás Manosalva PérezKlaas Vandepoele

A1 Journal Article in MOLECULAR PLANT

2021

Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors

Pingtao DingToshiyuki SakaiRam Krishna ShresthaNicolás Manosalva PérezWenbin GuoBruno Pok Man NgouShengbo HeChang LiuXiaoqi FengRunxuan Zhang et al.

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY