Research Explorer

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Researcher

Nick Vereecke

Awards & Distinctions

45 Results

2025

Advancing aquaculture probiotic discovery via an innovative protocol for isolation of indigenous, heat and salt tolerant, quorum quenching probiotic candidates

Philip RwezawulaWilson Waiswa MwanjaNick VereeckePeter BossierDaisy Vanrompay

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Genomic analysis and replication kinetics of the closely related EHV-1 neuropathogenic 21P40 and abortigenic 97P70 strains

Eslam MohamedInes ZarakNick VereeckeSebastiaan TheunsKathlyn LavalHans Nauwynck

A1 Journal Article in VETERINARY RESEARCH

2024

New insights into honey bee viral and bacterial seasonal infection patterns using third-generation nanopore sequencing on honey bee haemolymph

Cato Van HerzeleSieglinde CoppensNick VereeckeSebastiaan TheunsDirk de GraafHans Nauwynck

A1 Journal Article in VETERINARY RESEARCH

Phenotypic and genotypic assessment of iron acquisition in diverse bovine-associated non-aureus staphylococcal strains

Helena ReydamsBruno Toledo-SilvaKristien MertensSofie PiepersNick VereeckeFernando Nogueira De SouzaFreddy HaesebrouckSarne De Vliegher

A1 Journal Article in VETERINARY RESEARCH

The genetic landscape of antimicrobial resistance genes in Enterococcus cecorum broiler isolates

Yue HuangFilip BoyenGunther AntonissenNick VereeckeFilip Van Immerseel

A1 Journal Article in ANTIBIOTICS-BASEL

2023

Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur

Sofie RutjensNick VereeckeJannes SauerSiska CroubelsMathias Devreese

A1 Journal Article in VETERINARY RESEARCH

Characterization of third generation cephalosporin resistant Enterobacteriaceae from healthy pigs in western region of Cuba

Yanet López DortaHaylen Oliva BelloFilip BoyenNick VereeckeMichel Baez-AriasSebastiaan TheunsYvette EspinosaEric CoxPedro de la Fé RodriguezPatrick Butaye

Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes

Stan JourquinThomas LowieFlorian DebruyneLaurens ChantillonNick VereeckeFilip BoyenRandy BooneJade BokmaBart Pardon

A1 Journal Article in JOURNAL OF DAIRY SCIENCE

Genotyping and phylogeography of Infectious Bronchitis Virus isolates from Pakistan show unique linkage to GI-24 lineage

Waqar SaleemNick VereeckeMuhammad Goher ZamanFarhan AfzalIqra RemanSaeed ul-Hasan KhanHans Nauwynck

A1 Journal Article in POULTRY SCIENCE

Hemorrhagic bowel syndrome in dairy cattle : gross, histological, and microbiological characterization

Bert De JongeBart PardonEvy GoossensFilip Van ImmerseelNick VereeckeMathilde L. PasJozefien CallensNermin CaliskanStefan RoelsKoen Chiers

A1 Journal Article in VETERINARY PATHOLOGY

Porcine ear necrosis : characterization of lesions and associated pathogens

Mateusz MalikKoen ChiersSebastiaan TheunsNick VereeckeIlias ChantziarasSiska CroubelsDominiek Maes

A1 Journal Article in VETERINARY RESEARCH

Predictive power of long-read whole-genome sequencing for rapid diagnostics of multidrug-resistant brachyspira hyodysenteriae strains

Nick VereeckeNadine BotteldoornCharlotte BrosséCaroline BonckaertHans NauwynckFreddy HaesebrouckFilip BoyenDominiek MaesSebastiaan Theuns

A1 Journal Article in MICROBIOLOGY SPECTRUM

Prevalence and molecular characterization of methicillin-resistant Staphylococci (MRS) and Mammaliicocci (MRM) in dromedary camels from Algeria : first detection of SCCmec-mecC hybrid in methicillin-resistant Mammaliicoccus lentus

Chahrazed BelhoutFilip BoyenNick VereeckeSebastiaan TheunsNadia TaibiMarc SteggerPedro Yoelvys de la Fé-RodríguezLeila BouayadRachid ElgroudPatrick Butaye

A1 Journal Article in ANTIBIOTICS-BASEL

Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Nick VereeckeHans NauwynckSebastiaan TheunsFreddy HaesebrouckMarjan De Mey

Successful whole genome nanopore sequencing of swine influenza a virus (swIAV) directly from oral fluids collected in Polish pig herds

Nick VereeckeAleksandra WoźniakMarthe PauwelsSieglinde CoppensHans NauwynckPiotr CybulskiSebastiaan TheunsTomasz Stadejek

A1 Journal Article in VIRUSES-BASEL

Surveillance and genomic characterization of Influenza A and D viruses in swine, Belgium and the Netherlands, 2019–2021

Anna ParysNick VereeckeElien VandoornSebastiaan TheunsKristien Van Reeth

A1 Journal Article in EMERGING INFECTIOUS DISEASES

Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs

Nick VereeckeSophia ZwicklSophie GumbertAnnika GraafTimm HarderMathias RitzmannKathrin Lillie-JaschniskiSebastiaan TheunsJulia Stadler

A1 Journal Article in MICROBIOLOGY SPECTRUM

Virotyping and genetic antimicrobial susceptibility testing of porcine ETEC/STEC strains and associated plasmid types

Nick VereeckeSander Van hoordeDaniel SperlingSebastiaan TheunsBert DevriendtEric Cox

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates

Nick VereeckeArlette VandekerckhoveSebastiaan TheunsFreddy HaesebrouckFilip Boyen

A1 Journal Article in VETERINARY RESEARCH

2022

Does Hemorrhagic Bowel Syndrome start with small mucosal erosions?

Bert De JongeBart PardonFilip Van ImmerseelEvy GoossensNick VereeckeMathilde PasJozefien CallensKoen Chiers

Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes

Stan JourquinThomas LowieFlorian DebruyneLaurens ChantillonNick VereeckeRandy BooneBart Pardon

Functional analysis of human and feline coronavirus cross-reactive antibodies directed against the SARS-CoV-2 fusion peptide

Nathalie VanderheijdenAnnelies StevaertJiexiong XieXiaolei RenCyril BarbezangeSam NoppenIsabelle DesombereBruno VerhasseltPeter GeldhofNick Vereecke et al.

A1 Journal Article in FRONTIERS IN IMMUNOLOGY

Genomics-based epidemiology and antimicrobial susceptibility of Mycoplasma bovis isolates from veal, dairy, and beef herds

Jade BokmaNick VereeckeLinde GilleLaura Van DriesscheKoen De BleeckerHans NauwynckFreddy HaesebrouckSebastiaan TheunsFilip BoyenBart Pardon

Intestinal exposure to ceftiofur and cefquinome after intramuscular treatment and the impact of ceftiofur on the pig fecal microbiome and resistome

Sofie RutjensNick VereeckeWard De SpiegelaereSiska CroubelsMathias Devreese

A1 Journal Article in ANTIBIOTICS-BASEL

Intestinal exposure to ceftiofur and cefquinome after intramuscular treatment and the impact of ceftiofur on the pig fecal microbiome and resistome

Sofie RutjensNick VereeckeWard De SpiegelaereSiska CroubelsMathias Devreese

Molecular epidemiology of Porcine Parvovirus Type 1 (PPV1) and the reactivity of vaccine-induced antisera against historical and current PPV1 strains

Nick VereeckeLise Kirstine KvisgaardGuy BaeleCarine BooneMarius KunzeLars Erik LarsenSebastiaan TheunsHans Nauwynck

A1 Journal Article in VIRUS EVOLUTION

Nanopore sequencing as a rapid diagnostic tool for identification, strain typing, and antimicrobial susceptibility testing of Mycoplasma bovis

Jade BokmaNick VereeckeFreddy HaesebrouckHans NauwynckSebastiaan TheunsFilip BoyenBart Pardon

Randomized field trial comparing the efficacy of florfenicol and oxytetracycline in a natural outbreak of calf pneumonia using lung reaeration as a cure criterion

Stan JourquinJade BokmaLieze De CremerKatharina van LeenenNick VereeckeBart Pardon

A1 Journal Article in JOURNAL OF VETERINARY INTERNAL MEDICINE

The attenuated pseudorabies virus vaccine strain Bartha hyperactivates plasmacytoid dendritic cells by generating large amounts of cell-free virus in infected epithelial cells

Jonas DelvaCliff Van WaesbergheWim Van Den BroeckJochen LamoteNick VereeckeSebastiaan TheunsLiesbeth CouckHerman Favoreel

A1 Journal Article in JOURNAL OF VIROLOGY

Two years of genomic surveillance in Belgium during the SARS-CoV-2 pandemic to attain country-wide coverage and monitor the introduction and spread of emerging variants

Lize CuypersSimon DellicourSamuel L. HongBarney I. PotterBruno VerhasseltNick VereeckeLaurens LambrechtsKeith DurkinVincent BoursSofieke Klamer et al.

A1 Journal Article in VIRUSES-BASEL

Use of quick thoracic ultrasonography (qTUS) to guide and evaluate antimicrobial therapy in three natural outbreaks of Mycoplasma bovis pneumonia

Stan JourquinThomas LowieFlorian DebruyneLaurens ChantillonNick VereeckeRandy BooneBart Pardon

2021

Comparison of primary virus isolation in pulmonary alveolar macrophages and four different continuous cell lines for type 1 and type 2 porcine reproductive and respiratory syndrome virus

Jiexiong XieNick VereeckeSebastiaan TheunsDayoung OhNathalie VanderheijdenIvan TrusJannes SauerPhilip VytCaroline BonckaertChristian Lalonde et al.

A1 Journal Article in VACCINES

Evaluation of nanopore sequencing as a diagnostic tool for the rapid identification of Mycoplasma bovis from individual and pooled respiratory tract samples

Jade BokmaNick VereeckeMathilde PasLaurens ChantillonMarianne VahlEefke WeesendorpRuud H. DeurenbergHans NauwynckFreddy HaesebrouckSebastiaan Theuns et al.

A1 Journal Article in JOURNAL OF CLINICAL MICROBIOLOGY

Genome sequences of equine herpesvirus 1 strains from a European outbreak of neurological disorders linked to a horse gathering in Valencia, Spain, in 2021

Nick VereeckeFlora CarnetStéphane PronostKatleen VanschandevijlSebastiaan TheunsHans Nauwynck

A2 Journal Article in MICROBIOLOGY RESOURCE ANNOUNCEMENTS

Genome-wide association study reveals genetic markers for antimicrobial resistance in Mycoplasma bovis

Jade BokmaNick VereeckeHans NauwynckFreddy HaesebrouckSebastiaan TheunsBart PardonFilip Boyen

A1 Journal Article in MICROBIOLOGY SPECTRUM

Mycoplasma bovis point mutations as genetic markers for antimicrobial resistance revealed by Genome Wide Association Study (lecture, 12 min.)

Nick VereeckeJade BokmaFreddy HaesebrouckHans NauwynckSebastiaan TheunsBart PardonFilip Boyen

Organ-specific genome diversity of replication-competent SARS-CoV-2

Jolien Van CleemputWillem van SnippenbergLaurens LambrechtsAmélie DendoovenValentino D'OnofrioLiesbeth CouckWim TrypsteenJan VanrusseltSebastiaan TheunsNick Vereecke et al.

A1 Journal Article in NATURE COMMUNICATIONS

Presence of broad-spectrum beta-lactamase-producing Enterobacteriaceae in zoo mammals

Chloë De WitteNick VereeckeSebastiaan TheunsClaudia De RuyckFrancis VercammenTim BoutsFilip BoyenHans NauwynckFreddy Haesebrouck

A1 Journal Article in MICROORGANISMS

Species-specific humoral immune responses in sheep and goats upon small ruminant lentivirus infections inversely correlate with protection against virus replication and pathological lesions

Rodolphe MichielsStefan RoelsNick VereeckeElisabeth MathijsLaurent MostinNick De Regge

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2020

High quality MinION and Flongle long-read nanopore genome assemblies of Mycoplasma bovis using taxon-specific training of the Bonito basecaller

Nick VereeckeJade BokmaBart PardonFilip BoyenHans NauwynckSebastiaan Theuns

High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing

Nick VereeckeJade BokmaFreddy HaesebrouckHans NauwynckFilip BoyenBart PardonSebastiaan Theuns

A1 Journal Article in BMC BIOINFORMATICS

Isolation of Trypanosoma brucei brucei infection-derived splenic marginal zone B cells based on CD1dHigh/B220High surface expression in a two-step MACS-FACS approach

Magdalena RadwanskaNick VereeckeStefan Magez

Bookchapter in Trypanosomatids

Phylogenomic analysis and antimicrobial susceptibility data of Mycoplasma bovis from different Belgian cattle production systems

Jade BokmaNick VereeckeKoen De BleeckerJozefien CallensHans NauwynckFreddy HaesebrouckSebastiaan TheunsBart PardonFilip Boyen

Phylogenomic analysis of Mycoplasma bovis from Belgian veal, dairy and beef herds

Jade BokmaNick VereeckeKoen De BleeckerJozefien CallensStefaan RibbensHans NauwynckFreddy HaesebrouckSebastiaan TheunsFilip BoyenBart Pardon

A1 Journal Article in VETERINARY RESEARCH

2018

Salivarian trypanosomosis : a review of parasites involved, their global distribution and their interaction with the innate and adaptive mammalian host immune system

Magdalena RadwanskaNick VereeckeViolette DeleeuwJoar PintoStefan Magez

A1 Journal Article in FRONTIERS IN IMMUNOLOGY