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Researcher
Nick Vereecke
Profile
Projects
Publications
Activities
Awards & Distinctions
46
Results
2025
Advancing aquaculture probiotic discovery via an innovative protocol for isolation of indigenous, heat and salt tolerant, quorum quenching probiotic candidates
Philip Rwezawula
Wilson Waiswa Mwanja
Nick Vereecke
Peter Bossier
Daisy Vanrompay
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2025
Genomic analysis and replication kinetics of the closely related EHV-1 neuropathogenic 21P40 and abortigenic 97P70 strains
Eslam Mohamed
Ines Zarak
Nick Vereecke
Sebastiaan Theuns
Kathlyn Laval
Hans Nauwynck
A1
Journal Article
in
VETERINARY RESEARCH
2025
2024
Cross-Correlation between Biosecurity Measures and the Detection of Viral and Bacterial Agents on German Farms with Respiratory Disease
Julia Stadler
Kathrin Lillie-Jaschniski
Sophia Zwickl
Susanne Zoels
Sebastiaan Theuns
Mathias Ritzmann
Nick Vereecke
U
Journal Article
in
TRANSBOUNDARY AND EMERGING DISEASES
2024
New insights into honey bee viral and bacterial seasonal infection patterns using third-generation nanopore sequencing on honey bee haemolymph
Cato Van Herzele
Sieglinde Coppens
Nick Vereecke
Sebastiaan Theuns
Dirk de Graaf
Hans Nauwynck
A1
Journal Article
in
VETERINARY RESEARCH
2024
Phenotypic and genotypic assessment of iron acquisition in diverse bovine-associated non-aureus staphylococcal strains
Helena Reydams
Bruno Toledo-Silva
Kristien Mertens
Sofie Piepers
Nick Vereecke
Fernando Nogueira De Souza
Freddy Haesebrouck
Sarne De Vliegher
A1
Journal Article
in
VETERINARY RESEARCH
2024
The genetic landscape of antimicrobial resistance genes in Enterococcus cecorum broiler isolates
Yue Huang
Filip Boyen
Gunther Antonissen
Nick Vereecke
Filip Van Immerseel
A1
Journal Article
in
ANTIBIOTICS-BASEL
2024
2023
Cefquinome shows a higher impact on the pig gut microbiome and resistome compared to ceftiofur
Sofie Rutjens
Nick Vereecke
Jannes Sauer
Siska Croubels
Mathias Devreese
A1
Journal Article
in
VETERINARY RESEARCH
2023
Characterization of third generation cephalosporin resistant Enterobacteriaceae from healthy pigs in western region of Cuba
Yanet López Dorta
Haylen Oliva Bello
Filip Boyen
Nick Vereecke
Michel Baez-Arias
Sebastiaan Theuns
Yvette Espinosa
Eric Cox
Pedro de la Fé Rodriguez
Patrick Butaye
C3
Conference
2023
Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes
Stan Jourquin
Thomas Lowie
Florian Debruyne
Laurens Chantillon
Nick Vereecke
Filip Boyen
Randy Boone
Jade Bokma
Bart Pardon
A1
Journal Article
in
JOURNAL OF DAIRY SCIENCE
2023
Genotyping and phylogeography of Infectious Bronchitis Virus isolates from Pakistan show unique linkage to GI-24 lineage
Waqar Saleem
Nick Vereecke
Muhammad Goher Zaman
Farhan Afzal
Iqra Reman
Saeed ul-Hasan Khan
Hans Nauwynck
A1
Journal Article
in
POULTRY SCIENCE
2023
Hemorrhagic bowel syndrome in dairy cattle : gross, histological, and microbiological characterization
Bert De Jonge
Bart Pardon
Evy Goossens
Filip Van Immerseel
Nick Vereecke
Mathilde L. Pas
Jozefien Callens
Nermin Caliskan
Stefan Roels
Koen Chiers
A1
Journal Article
in
VETERINARY PATHOLOGY
2023
Porcine ear necrosis : characterization of lesions and associated pathogens
Mateusz Malik
Koen Chiers
Sebastiaan Theuns
Nick Vereecke
Ilias Chantziaras
Siska Croubels
Dominiek Maes
A1
Journal Article
in
VETERINARY RESEARCH
2023
Predictive power of long-read whole-genome sequencing for rapid diagnostics of multidrug-resistant brachyspira hyodysenteriae strains
Nick Vereecke
Nadine Botteldoorn
Charlotte Brossé
Caroline Bonckaert
Hans Nauwynck
Freddy Haesebrouck
Filip Boyen
Dominiek Maes
Sebastiaan Theuns
A1
Journal Article
in
MICROBIOLOGY SPECTRUM
2023
Prevalence and molecular characterization of methicillin-resistant Staphylococci (MRS) and Mammaliicocci (MRM) in dromedary camels from Algeria : first detection of SCCmec-mecC hybrid in methicillin-resistant Mammaliicoccus lentus
Chahrazed Belhout
Filip Boyen
Nick Vereecke
Sebastiaan Theuns
Nadia Taibi
Marc Stegger
Pedro Yoelvys de la Fé-Rodríguez
Leila Bouayad
Rachid Elgroud
Patrick Butaye
A1
Journal Article
in
ANTIBIOTICS-BASEL
2023
Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing
Nick Vereecke
Hans Nauwynck
Sebastiaan Theuns
Freddy Haesebrouck
Marjan De Mey
Dissertation
2023
Successful whole genome nanopore sequencing of swine influenza a virus (swIAV) directly from oral fluids collected in Polish pig herds
Nick Vereecke
Aleksandra Woźniak
Marthe Pauwels
Sieglinde Coppens
Hans Nauwynck
Piotr Cybulski
Sebastiaan Theuns
Tomasz Stadejek
A1
Journal Article
in
VIRUSES-BASEL
2023
Surveillance and genomic characterization of Influenza A and D viruses in swine, Belgium and the Netherlands, 2019–2021
Anna Parys
Nick Vereecke
Elien Vandoorn
Sebastiaan Theuns
Kristien Van Reeth
A1
Journal Article
in
EMERGING INFECTIOUS DISEASES
2023
Viral and bacterial profiles in endemic influenza A virus infected swine herds using nanopore metagenomic sequencing on tracheobronchial swabs
Nick Vereecke
Sophia Zwickl
Sophie Gumbert
Annika Graaf
Timm Harder
Mathias Ritzmann
Kathrin Lillie-Jaschniski
Sebastiaan Theuns
Julia Stadler
A1
Journal Article
in
MICROBIOLOGY SPECTRUM
2023
Virotyping and genetic antimicrobial susceptibility testing of porcine ETEC/STEC strains and associated plasmid types
Nick Vereecke
Sander Van hoorde
Daniel Sperling
Sebastiaan Theuns
Bert Devriendt
Eric Cox
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2023
Whole genome sequencing to study antimicrobial resistance and RTX virulence genes in equine Actinobacillus isolates
Nick Vereecke
Arlette Vandekerckhove
Sebastiaan Theuns
Freddy Haesebrouck
Filip Boyen
A1
Journal Article
in
VETERINARY RESEARCH
2023
2022
Does Hemorrhagic Bowel Syndrome start with small mucosal erosions?
Bert De Jonge
Bart Pardon
Filip Van Immerseel
Evy Goossens
Nick Vereecke
Mathilde Pas
Jozefien Callens
Koen Chiers
C3
Conference
2022
Dynamics of subclinical pneumonia in male dairy calves in relation to antimicrobial therapy and production outcomes
Stan Jourquin
Thomas Lowie
Florian Debruyne
Laurens Chantillon
Nick Vereecke
Randy Boone
Bart Pardon
C3
Conference
2022
Functional analysis of human and feline coronavirus cross-reactive antibodies directed against the SARS-CoV-2 fusion peptide
Nathalie Vanderheijden
Annelies Stevaert
Jiexiong Xie
Xiaolei Ren
Cyril Barbezange
Sam Noppen
Isabelle Desombere
Bruno Verhasselt
Peter Geldhof
Nick Vereecke
et al.
A1
Journal Article
in
FRONTIERS IN IMMUNOLOGY
2022
Genomics-based epidemiology and antimicrobial susceptibility of Mycoplasma bovis isolates from veal, dairy, and beef herds
Jade Bokma
Nick Vereecke
Linde Gille
Laura Van Driessche
Koen De Bleecker
Hans Nauwynck
Freddy Haesebrouck
Sebastiaan Theuns
Filip Boyen
Bart Pardon
C3
Conference
2022
Intestinal exposure to ceftiofur and cefquinome after intramuscular treatment and the impact of ceftiofur on the pig fecal microbiome and resistome
Sofie Rutjens
Nick Vereecke
Ward De Spiegelaere
Siska Croubels
Mathias Devreese
A1
Journal Article
in
ANTIBIOTICS-BASEL
2022
Intestinal exposure to ceftiofur and cefquinome after intramuscular treatment and the impact of ceftiofur on the pig fecal microbiome and resistome
Sofie Rutjens
Nick Vereecke
Ward De Spiegelaere
Siska Croubels
Mathias Devreese
C3
Conference
2022
Molecular epidemiology of Porcine Parvovirus Type 1 (PPV1) and the reactivity of vaccine-induced antisera against historical and current PPV1 strains
Nick Vereecke
Lise Kirstine Kvisgaard
Guy Baele
Carine Boone
Marius Kunze
Lars Erik Larsen
Sebastiaan Theuns
Hans Nauwynck
A1
Journal Article
in
VIRUS EVOLUTION
2022
Nanopore sequencing as a rapid diagnostic tool for identification, strain typing, and antimicrobial susceptibility testing of Mycoplasma bovis
Jade Bokma
Nick Vereecke
Freddy Haesebrouck
Hans Nauwynck
Sebastiaan Theuns
Filip Boyen
Bart Pardon
C3
Conference
2022
Randomized field trial comparing the efficacy of florfenicol and oxytetracycline in a natural outbreak of calf pneumonia using lung reaeration as a cure criterion
Stan Jourquin
Jade Bokma
Lieze De Cremer
Katharina van Leenen
Nick Vereecke
Bart Pardon
A1
Journal Article
in
JOURNAL OF VETERINARY INTERNAL MEDICINE
2022
The attenuated pseudorabies virus vaccine strain Bartha hyperactivates plasmacytoid dendritic cells by generating large amounts of cell-free virus in infected epithelial cells
Jonas Delva
Cliff Van Waesberghe
Wim Van Den Broeck
Jochen Lamote
Nick Vereecke
Sebastiaan Theuns
Liesbeth Couck
Herman Favoreel
A1
Journal Article
in
JOURNAL OF VIROLOGY
2022
Two years of genomic surveillance in Belgium during the SARS-CoV-2 pandemic to attain country-wide coverage and monitor the introduction and spread of emerging variants
Lize Cuypers
Simon Dellicour
Samuel L. Hong
Barney I. Potter
Bruno Verhasselt
Nick Vereecke
Laurens Lambrechts
Keith Durkin
Vincent Bours
Sofieke Klamer
et al.
A1
Journal Article
in
VIRUSES-BASEL
2022
Use of quick thoracic ultrasonography (qTUS) to guide and evaluate antimicrobial therapy in three natural outbreaks of Mycoplasma bovis pneumonia
Stan Jourquin
Thomas Lowie
Florian Debruyne
Laurens Chantillon
Nick Vereecke
Randy Boone
Bart Pardon
C3
Conference
2022
2021
Comparison of primary virus isolation in pulmonary alveolar macrophages and four different continuous cell lines for type 1 and type 2 porcine reproductive and respiratory syndrome virus
Jiexiong Xie
Nick Vereecke
Sebastiaan Theuns
Dayoung Oh
Nathalie Vanderheijden
Ivan Trus
Jannes Sauer
Philip Vyt
Caroline Bonckaert
Christian Lalonde
et al.
A1
Journal Article
in
VACCINES
2021
Evaluation of nanopore sequencing as a diagnostic tool for the rapid identification of Mycoplasma bovis from individual and pooled respiratory tract samples
Jade Bokma
Nick Vereecke
Mathilde Pas
Laurens Chantillon
Marianne Vahl
Eefke Weesendorp
Ruud H. Deurenberg
Hans Nauwynck
Freddy Haesebrouck
Sebastiaan Theuns
et al.
A1
Journal Article
in
JOURNAL OF CLINICAL MICROBIOLOGY
2021
Genome sequences of equine herpesvirus 1 strains from a European outbreak of neurological disorders linked to a horse gathering in Valencia, Spain, in 2021
Nick Vereecke
Flora Carnet
Stéphane Pronost
Katleen Vanschandevijl
Sebastiaan Theuns
Hans Nauwynck
A2
Journal Article
in
MICROBIOLOGY RESOURCE ANNOUNCEMENTS
2021
Genome-wide association study reveals genetic markers for antimicrobial resistance in Mycoplasma bovis
Jade Bokma
Nick Vereecke
Hans Nauwynck
Freddy Haesebrouck
Sebastiaan Theuns
Bart Pardon
Filip Boyen
A1
Journal Article
in
MICROBIOLOGY SPECTRUM
2021
Mycoplasma bovis point mutations as genetic markers for antimicrobial resistance revealed by Genome Wide Association Study (lecture, 12 min.)
Nick Vereecke
Jade Bokma
Freddy Haesebrouck
Hans Nauwynck
Sebastiaan Theuns
Bart Pardon
Filip Boyen
C3
Conference
2021
Organ-specific genome diversity of replication-competent SARS-CoV-2
Jolien Van Cleemput
Willem van Snippenberg
Laurens Lambrechts
Amélie Dendooven
Valentino D'Onofrio
Liesbeth Couck
Wim Trypsteen
Jan Vanrusselt
Sebastiaan Theuns
Nick Vereecke
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2021
Presence of broad-spectrum beta-lactamase-producing Enterobacteriaceae in zoo mammals
Chloë De Witte
Nick Vereecke
Sebastiaan Theuns
Claudia De Ruyck
Francis Vercammen
Tim Bouts
Filip Boyen
Hans Nauwynck
Freddy Haesebrouck
A1
Journal Article
in
MICROORGANISMS
2021
Species-specific humoral immune responses in sheep and goats upon small ruminant lentivirus infections inversely correlate with protection against virus replication and pathological lesions
Rodolphe Michiels
Stefan Roels
Nick Vereecke
Elisabeth Mathijs
Laurent Mostin
Nick De Regge
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2021
2020
High quality MinION and Flongle long-read nanopore genome assemblies of Mycoplasma bovis using taxon-specific training of the Bonito basecaller
Nick Vereecke
Jade Bokma
Bart Pardon
Filip Boyen
Hans Nauwynck
Sebastiaan Theuns
C3
Conference
2020
High quality genome assemblies of Mycoplasma bovis using a taxon-specific Bonito basecaller for MinION and Flongle long-read nanopore sequencing
Nick Vereecke
Jade Bokma
Freddy Haesebrouck
Hans Nauwynck
Filip Boyen
Bart Pardon
Sebastiaan Theuns
A1
Journal Article
in
BMC BIOINFORMATICS
2020
Isolation of Trypanosoma brucei brucei infection-derived splenic marginal zone B cells based on CD1dHigh/B220High surface expression in a two-step MACS-FACS approach
Magdalena Radwanska
Nick Vereecke
Stefan Magez
Bookchapter
in
Trypanosomatids
2020
Phylogenomic analysis and antimicrobial susceptibility data of Mycoplasma bovis from different Belgian cattle production systems
Jade Bokma
Nick Vereecke
Koen De Bleecker
Jozefien Callens
Hans Nauwynck
Freddy Haesebrouck
Sebastiaan Theuns
Bart Pardon
Filip Boyen
C3
Conference
2020
Phylogenomic analysis of Mycoplasma bovis from Belgian veal, dairy and beef herds
Jade Bokma
Nick Vereecke
Koen De Bleecker
Jozefien Callens
Stefaan Ribbens
Hans Nauwynck
Freddy Haesebrouck
Sebastiaan Theuns
Filip Boyen
Bart Pardon
A1
Journal Article
in
VETERINARY RESEARCH
2020
2018
Salivarian trypanosomosis : a review of parasites involved, their global distribution and their interaction with the innate and adaptive mammalian host immune system
Magdalena Radwanska
Nick Vereecke
Violette Deleeuw
Joar Pinto
Stefan Magez
A1
Journal Article
in
FRONTIERS IN IMMUNOLOGY
2018