Research Explorer

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Researcher

Michiel Van Bel

Awards & Distinctions

45 Results

2024

Application of orthology and network biology to infer gene functions in non‐model plants

Klaas VandepoeleSander ThierensMichiel Van Bel

A1 Journal Article in PHYSIOLOGIA PLANTARUM

Leaf growth : complex regulation of a seemingly simple process.

Michele SchneiderMichiel Van BelDirk InzéAlexandra Baekelandt

A1 Journal Article in PLANT JOURNAL

Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction

Sien AudoorGust BilckeKaterina ParganaDarja BelišováSander ThierensMichiel Van BelLieven SterckNadine RijsdijkRossella AnnunziataMaria Immacolata Ferrante et al.

A1 Journal Article in MOLECULAR ECOLOGY

2023

Spatial transcriptomics of a lycophyte root sheds light on root evolution

Xilan YangWard PoelmansCarolin SeyfferthAbdellah LakehalJulie PevernagieMichiel Van BelMaria NjoLin XuHilde NelissenBert De Rybel et al.

A1 Journal Article in CURRENT BIOLOGY

2022

Chromosome-scale assembly and annotation of the perennial ryegrass genome

Istvan NagyElisabeth VeeckmanChang LiuMichiel Van BelKlaas VandepoeleChristian Sig JensenTom RuttinkTorben Asp

A1 Journal Article in BMC GENOMICS

Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators

Inge De ClercqJan Van de VeldeXiaopeng LuoLi LiuVeronique StormeMichiel Van BelRobin PottieDries VaneechoutteFrank Van BreusegemKlaas Vandepoele

2021

Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account

Michiel Van BelKlaas Vandepoele

A1 Journal Article in BIOINFORMATICS

Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators

Inge De ClercqJan Van de VeldeXiaopeng LuoLi LiuVeronique StormeMichiel Van BelRobin PottieDries VaneechoutteFrank Van BreusegemKlaas Vandepoele

A1 Journal Article in NATURE PLANTS

The Arabidopsis condensin CAP‐D subunits arrange interphase chromatin

Celia MunicioWojciech AntoszKlaus D. GrasserEtienne KornobisMichiel Van BelIgnacio EguinoaFrederik CoppensAndrea BräutigamInna LermontovaAstrid Bruckmann et al.

A1 Journal Article in NEW PHYTOLOGIST

2020

Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth

Jasmien VercruysseMichiel Van BelCristina OsunaShubhada Rajabhau KulkarniVéronique Van den StormeHilde NelissenNathalie Gonzalez SanchezDirk InzéKlaas Vandepoele

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds

Andrea Del CortonaChristopher J. JacksonFrançois BucchiniMichiel Van BelSofie D'hondtPavel ŠkaloudCharles F. DelwicheAndrew H. KnollJohn A. RavenHeroen Verbruggen et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant-RRBS : DNA methylome profiling adjusted to plant genomes, utilizing efficient endonuclease combinations, for multi-sample studies

Martin SchmidtMagdalena WoloszynskaMichiel Van BelFrederik CoppensMaria Van Lijsebettens

Bookchapter in Plant epigenetics and epigenomics : methods and protocols

2019

Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase

Jelle Van LeeneChao HanAstrid GadeyneDominique EeckhoutCaroline MatthijsBernard CannootNancy De WinneGeert PersiauEveline Van De SlijkeBrigitte Van De Cotte et al.

A1 Journal Article in NATURE PLANTS

Gene space completeness in complex plant genomes

Michiel Van BelFrançois BucchiniKlaas Vandepoele

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

2018

Insights into the evolution of multicellularity from the sea lettuce genome

Olivier De ClerckShu-Min KaoKenny BogaertJonas BlommeFatima FoflonkerMichiel KwantesEmmelien VancaesterLisa VanderstraetenEylem Aydogdu LohausJens Boesger et al.

A1 Journal Article in CURRENT BIOLOGY

PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics

Michiel Van BelTim DielsEmmelien VancaesterLukasz KreftAlexander BotzkiYves Van de PeerFrederik CoppensKlaas Vandepoele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution

Daniel LangKristian K UllrichFlorent MuratJoerg FuchsJerry JenkinsFabian B HaasMathieu PiednoelHeidrun GundlachMichiel Van BelRabea Meyberg et al.

A1 Journal Article in PLANT JOURNAL

2017

Exploring plant co-expression and gene-gene Interactions with CORNET 3.0

Michiel Van BelFrederik Coppens

Bookchapter in Plant genomics databases : methods and protocols

PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization

Lukasz KreftAlexander BotzkiFrederik CoppensKlaas VandepoeleMichiel Van Bel

A1 Journal Article in BIOINFORMATICS

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions

Martin SchmidtMichiel Van BelMagdalena WoloszynskaBram SlabbinckCindy MartensMarc De BlockFrederik CoppensMaria Van Lijsebettens

A1 Journal Article in BMC PLANT BIOLOGY

Proteome profiling of wheat shoots from different cultivars

Lam Dai VuInge VerstraetenElisabeth StesMichiel Van BelFrederik CoppensKris GevaertIve De Smet

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

Reciprocally retained genes in the angiosperm lineage show the hallmarks of dosage balance sensitivity

Setareh TasdighianMichiel Van BelZhen LiYves Van de PeerLorenzo Carretero-PauletSteven Maere

A1 Journal Article in PLANT CELL

2016

A collection of conserved noncoding sequences to study gene regulation in flowering plants

Jan Van de VeldeMichiel Van BelDries VaneechoutteKlaas Vandepoele

A1 Journal Article in PLANT PHYSIOLOGY

It's time for some 'site'-seeing: novel tools to monitor the ubiquitin landscape in Arabidopsis thaliana

Alan WaltonElisabeth StesNicolas CybulskiMichiel Van BelSabrina IñigoAstrid Nagels DurandEvy TimmermanJefri HeymanLaurens PauwelsLieven De Veylder et al.

A1 Journal Article in PLANT CELL

PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root

Kun YuePriyanka SandalElisabeth L. WilliamsEvan MurphyElisabeth StesNatalia NikonorovaPriya RamakrishnaNathan CzyzewiczLaura Montero MoralesRobert Kumpf et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Up-to-date workflow for plant (phospho)proteomics identifies differential drought-responsive phosphorylation events in maize leaves

Lam Dai VuElisabeth StesMichiel Van BelHilde NelissenDavy MaddeleinDirk InzéFrederik CoppensLennart MartensKris GevaertIve De Smet

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2015

A conserved core of programmed cell death indicator genes discriminates developmentally and environmentally induced programmed cell death in plants

Yadira Olvera CarrilloMichiel Van BelTom Van HautegemMatyas FendrychMarlies HuysmansMária Braun ŠimáškováMatthias Van DurmePierre BuscaillSusana RivasNuria S Coll et al.

A1 Journal Article in PLANT PHYSIOLOGY

BLSSpeller : exhaustive comparative discovery of conserved cis-regulatory elements

Dieter De WitteJan Van de VeldeDries DecapMichiel Van BelP. AudenaertPiet DemeesterBart DhoedtKlaas VandepoeleJan Fostier

A1 Journal Article in BIOINFORMATICS

Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf

Hilde NelissenDominique EeckhoutKirin DemuynckGeert PersiauAlan WaltonMichiel Van BelMarieke VervoortJasper CandaeleJolien De BlockStijn Aesaert et al.

A1 Journal Article in PLANT CELL

PLAZA 3.0 : an access point for plant comparative genomics

Sebastian ProostMichiel Van BelDries VaneechoutteYves Van de PeerDirk InzéBernd Mueller-RoeberKlaas Vandepoele

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2014

A parallel, distributed-memory framework for comparative motif discovery

Dieter De WitteMichiel Van BelP. AudenaertPiet DemeesterBart DhoedtKlaas VandepoeleJan Fostier

Big data and other challenges in the quest for orthologs

Erik LL SonnhammerToni GabaldónAlan W Sousa da SilvaMaria MartinMarc Robinson-RechaviBrigitte BoeckmannPaul D ThomasChristine Dessimozthe Quest Orthologs ConsortiumMichiel Van Bel et al.

Editorial material

Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways

Lívia VargasAilton B Santa BrigidaJosé P Mota FilhoThais G de CarvalhoCristian A RojasDries VaneechoutteMichiel Van BelLaurent FarrinelliPaulo CG FerreiraKlaas Vandepoele et al.

A1 Journal Article in PLOS ONE

2013

Comparative motif discovery in the cloud

Dieter De WitteJan Van de VeldeMichiel Van BelP. AudenaertPiet DemeesterBart DhoedtKlaas VandepoeleJan Fostier

TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes

Michiel Van BelSebastian ProostChristophe Van NesteDieter DeforceYves Van de PeerKlaas Vandepoele

A1 Journal Article in GENOME BIOLOGY

pico-PLAZA, a genome database of microbial photosynthetic eukaryotes

Klaas VandepoeleMichiel Van BelGuilhem RichardSofie Van LandeghemBram VerhelstHervé MoreauYves Van de PeerNigel GrimsleyGwenael Piganeau

A1 Journal Article in ENVIRONMENTAL MICROBIOLOGY

2012

A high performance computing approach to the dicovery of conserved motifs

Dieter De WitteMichiel Van BelPiet DemeesterBart DhoedtKlaas VandepoeleJan Fostier

Alignment-free genome-wide comparative motif discovery in 4 Monocot species

Dieter De WitteMichiel Van BelPiet DemeesterBart DhoedtKlaas VandepoeleJan Fostier

Comparative analysis of plant genomes through data integration

Michiel Van BelYves Van de PeerKlaas Vandepoele

Comparative co-expression analysis in plant biology

Sara MovahediMichiel Van BelKen HeyndrickxKlaas Vandepoele

A1 Journal Article in PLANT CELL AND ENVIRONMENT

Dissecting plant genomes with the PLAZA comparative genomics platform

Michiel Van BelSebastian ProostElisabeth WischnitzkiSara MovahediChristopher ScheerlinckYves Van de PeerKlaas Vandepoele

A1 Journal Article in PLANT PHYSIOLOGY

Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage

Hervé MoreauBram VerhelstArnaud CoulouxEvelyne DerelleStephane RombautsNigel GrimsleyMichiel Van BelJulie PoulainMichaël KatinkaMartin F Hohmann-Marriott et al.

A1 Journal Article in GENOME BIOLOGY

Toward community standards in the quest for orthologs

Christophe DessimozToni GabaldónDavid S RoosErik LL SonnhammerJavier Herrerothe Quest Orthologs ConsortiumKlaas VandepoeleMichiel Van Bel

A1 Journal Article in BIOINFORMATICS

2009

PLAZA : a comparative genomics resource to study gene and genome evolution in plants

Sebastian ProostMichiel Van BelLieven SterckKenny BilliauThomas Van ParysYves Van de PeerKlaas Vandepoele

A1 Journal Article in PLANT CELL

2008

FunSiP: a modular and extensible classifier for the prediction of functional sites in DNA

Michiel Van BelYvan SaeysYves Van de Peer

A1 Journal Article in BIOINFORMATICS