Research Explorer

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Researcher

Marjan De Mey

Publications & Research Data

Awards & Distinctions

293 Results

2026

Accelerated adaptive laboratory evolution : a tool for evolutionary biotechnology

Luna DeclerckFlorent BouchonWouter DemeesterChiara GuidiMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

2025

Art–science collaborations in biotechnology research : a transdisciplinary approach

Christina StadlbauerMarjan De MeyKatrien SchaubroeckNele BuystVarsha PaleriKristien Hens

A1 Journal Article in TRENDS IN BIOTECHNOLOGY

Bioconversion of mushroom chitin-rich waste into valuable chitin oligosaccharides using a combined approach of biocatalysis and precision fermentation

Alex WindelsLuna DeclerckSofie SnoeckWouter DemeesterChiara GuidiTom DesmetMarjan De Mey

A1 Journal Article in JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Biological switches : past and future milestones of transcription factor-based biosensors

Brecht De PaepeMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Characterization and orthogonality assessment of two quorum sensing systems for synthetic biology applications

Jasmine De BaetsBrecht De PaepeMarjan De Mey

A1 Journal Article in NEW BIOTECHNOLOGY

Effects of genomic location on ectopic integration and gene expression of a reporter gene cassette in Sulfolobus acidocaldarius

Yifei XuAndries PeetersIndra BervoetsMarjan De MeyRani BaesEveline Peeters

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Engineering bacteria to enhance mycelium-based materials through in situ delivery of biobased and biodegradable additives

Marc Kessels I SoléMarjan De Mey

ESM2-driven transmembrane domain selection for optimising plant P450s in microbial hosts

Miguel De BlockCamila PontesLien De WannemaekerMiguel RomeroAlfonso ValenciaMarjan De Mey

Expanding the quorum sensing toolbox : promoter libraries and hybrid promoter for dynamic genetic circuits

Jasmine De BaetsIréne ParmentierBrecht De PaepeMarjan De Mey

A1 Journal Article in NEW BIOTECHNOLOGY

Expanding the toolbox of quorum sensing switches toward the creation of two-stage fermentation processes

Jasmine De BaetsMarjan De MeyBrecht De Paepe

In vitro and in vivo scaffolded enzyme cascades

Marte EliasYves BriersMarjan De Mey

Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

Friederike MeyGaetan De WaeleWouter DemeesterChiara GuidiDries DuchiTomek DiederenHanne KochuytKirsten Van HuffelNicola ZamboniWillem Waegeman et al.

A1 Journal Article in NEW BIOTECHNOLOGY

Non-model bacteria as platforms for endogenous gene expression in synthetic biology

Jorien PoppeliersMaarten BoonMarjan De MeyJoleen MasscheleinRob Lavigne

A2 Journal Article in NATURE REVIEWS BIOENGINEERING

Novel approaches in chitin bioconversion : exploration, characterization and engineering of chitinases for chitin oligosaccharide production

Alex WindelsTom DesmetMarjan De Mey

Single-cell analysis of yeast surface display for designer cellulosome applications using a fluorescent protein complex

Babette LamoteEmma CremelieKristel DemeyerePhilippe De GrooteDennis GrimonJulie VanderstraetenEvelyne MeyerMarjan De MeyYves Briers

A1 Journal Article in MICROBIOLOGY SPECTRUM

Strength in diversity : unlocking the full potential of engineered living materials with multistrain collaboration

Hannelore WilssensLien De WannemaekerMarjan De Mey

A1 Journal Article in FEMS MICROBIOLOGY REVIEWS

To transcription and beyond : development and application of transcriptional tools for yeasts and archaea

Andries PeetersMarjan De MeyBrecht De PaepeEveline Peeters

Unlocking the potential of non-model bacteria : development of a cross-bacterial gene expression toolbox

Cara DealMarjan De MeyLien De WannemaekerAntoni Planas

Unravelling the regulatory network behind chitin degradation in Serratia marcescens

Wouter DemeesterBrecht De PaepeChiara GuidiMarjan De Mey

A1 Journal Article in BIOLOGICAL REVIEWS

2024

'Metabolic burden' explained : stress symptoms and its related responses induced by (over)expression of (heterologous) proteins in Escherichia coli

Sofie SnoeckChiara GuidiMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

A cross-bacterial gene expression toolbox : engineering orthogonal transcription to enable predictable genetic engineering in diverse bacterial hosts

Cara DealDaniel Ariza CalvoBrecht De PaepeAntoni PlanasLien De WannemaekerMarjan De Mey

Advancing Engineered Living Materials : integrating filamentous fungi and bacteria for fully biological and functional living materials

Hannelore WilssensLien De WannemaekerMarjan De Mey

Approaches to the development of designer cellulosomes for biorefinery applications

Babette LamoteYves BriersMarjan De Mey

Assessing the transcriptional landscape of Pseudomonas phage 201ϕ2-1 : uncovering the small regulatory details of a giant phage

Jorien PoppeliersMathijs FocquetMaarten BoonMarjan De MeyJulie ThomasRob Lavigne

A1 Journal Article in MICROBIAL BIOTECHNOLOGY

Colocalization of glycolytic enzymes on a synthetic protein scaffold

Marte EliasKenan MeertJulie VanderstraetenBabette LamoteYves BriersMarjan De Mey

Delaying production with prokaryotic inducible expression systems

Jasmine De BaetsBrecht De PaepeMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Development of a dynamic feedback genetic circuit for efficient membrane protein production in Cereibacter sphaeroides to produce plant metabolites

Carla Gil PiñeiraLien De WannemaekerMarjan De Mey

Domain swapping of LysR-type transcriptional regulators for the development of orthogonal biosensors

Wouter DemeesterBrecht De PaepeLuna DeclerckAntoni Sauter PlanasMarjan De Mey

Expanding the chitin oligosaccharide portfolio by engineering NodC chitin synthases in Escherichia coli

Chiara GuidiXevi BiarnésAntoni PlanasMarjan De Mey

A2 Journal Article in CURRENT RESEARCH IN BIOTECHNOLOGY

Fundamentals and exceptions of the LysR-type transcriptional regulators

Wouter DemeesterBrecht De PaepeMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Harnessing quorum sensing systems for complex genetic circuitry

Jasmine De BaetsIréne ParmentierBrecht De PaepeMarjan De Mey

Leveraging ESM2 embeddings for transmembrane domain selection in the optimisation of plant cytochrome P450 functionality in microbial cell factories

Miguel De BlockCamila PontesLien De WannemaekerMiguel RomeroAlfonso ValenciaMarjan De Mey

Standardization and expansion of microbial cell sensors : harnessing the power of LysR-type transcriptional regulators

Wouter DemeesterMarjan De MeyBrecht De PaepeAntoni Planas

Sustainable bioconversion of mushroom chitin-rich waste into valuable biobased chitooligosaccharides using a combined approach of biocatalysis and precision fermentation

Alex WindelsLuna DeclerckSofie SnoeckWouter DemeesterChiara GuidiTom DesmetMarjan De Mey

Sustainable chitooligosaccharide production from chitin-rich fungal waste via precision fermentation with metabolically engineered E. coli

Luna DeclerckAlex WindelsSofie SnoeckWouter DemeesterChiara GuidiTom DesmetMarjan De Mey

Sustainable production of well-defined chitooligosaccharides from chitin-rich fungal waste by integrating biocatalysis and precision fermentation

Luna DeclerckAlex WindelsSofie SnoeckWouter DemeesterChiara GuidiTom DesmetMarjan De Mey

Towards a rational approach to promoter engineering : understanding the complexity of transcription initiation in prokaryotes

Cara DealLien De WannemaekerMarjan De Mey

A1 Journal Article in FEMS MICROBIOLOGY REVIEWS

Towards a universal, predictable and tuneable gene expression toolbox : strategies for engineering orthogonal transcription in bacteria

Cara DealDaniel Ariza CalvoBrecht De PaepeAntoni PlanasLien De WannemaekerMarjan De Mey

Understanding bottlenecks in the microbial production of partially acetylated chitooligosaccharides

Hamza MalikSofie SnoeckChiara GuidiWouter DemeesterMarjan De Mey

Unlocking the potential of quorum sensing systems for synthetic biology applications

Jasmine De BaetsIréne ParmentierBrecht De PaepeMarjan De Mey

Viable co-cultivation of filamentous fungi and engineered bacteria for fully biological and tuneable living materials

Hannelore WilssensLien De WannemaekerMarjan De Mey

2023

Computational design of new-to-nature biological sensors : unlocking the full potential of transcriptional regulation for custom biosensor development

Brecht De PaepeWouter DemeesterJasmine De BaetsDries DuchiMarjan De Mey

Controlled processivity in glycosyltransferases : a way to expand the enzymatic toolbox

Chiara GuidiXevi BiarnésAntoni PlanasMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Engineering orthogonal transcription for the development of a cross-bacterial, orthogonal and tuneable gene expression toolbox

Cara DealLien De WannemaekerBrecht De PaepeAntoni PlanasMarjan De Mey

From mushroom waste to specialty sugar : valorisation of chitin-rich waste streams using E. coli

Sofie SnoeckChiara GuidiMiguel De BlockTomek DiederenNicola ZamboniMarjan De Mey

High-throughput in vivo screening of novel prokaryotic, metabolite-responsive transcription factors for biosensor development

Amber BernauwIndra BervoetsAndries PeetersBrecht De PaepeMarjan De MeyEveline Peeters

Human gut microbiota stratified by (+)-catechin metabolism dynamics reveals colon region-dependent metabolic profile

Qiqiong LiJan StautemasStanley Omondi OnyangoMarjan De MeyDries DuchiEmmy TuenterNina HermansPatrick CaldersTom Van de Wiele

A1 Journal Article in FOOD CHEMISTRY

Integration of synthetic biology, systems biology and machine learning for the production of chitooligosaccharides in Escherichia coli

Friederike MeyMarjan De MeyWillem Waegeman

MoBioS : modular platform technology for high-throughput construction and characterization of tunable transcriptional biological sensors

Wouter DemeesterJasmine De BaetsDries DuchiMarjan De MeyBrecht De Paepe

A1 Journal Article in BIOSENSORS-BASEL

Multi-omics approach for the valorisation of chitin-rich waste into specialty sugars using E. coli

Sofie SnoeckChiara GuidiMiguel De BlockTomek DiederenNicola ZamboniMarjan De Mey

Promoter engineering to create quorum sensing-based genetic circuits

Jasmine De BaetsBrecht De PaepeMarjan De Mey

Revolutionizing viral and bacterial diagnostics in veterinary medicine using nanopore sequencing

Nick VereeckeHans NauwynckSebastiaan TheunsFreddy HaesebrouckMarjan De Mey

Smart living biomaterials : development of a mycelium-bacteria cocultivation platform to engineer material functionalities

Hannelore WilssensMarjan De MeyEveline Peeters

Specific and reliable production of microbial, non-animal derived chitooligosaccharides : the B-COS platform

Chiara GuidiMarjan De Mey

Standardization of fluorescent reporter assays in synthetic biology across the visible light spectrum

Lien De WannemaekerFriederike MeyIndra BervoetsMichiel Ver CruysseGeoff S. BaldwinMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Taming CRISPRi : dynamic range tuning through guide RNA diversion

Bob Van HoveLien De WannemaekerIsolde MissiaenJo MaertensMarjan De Mey

A1 Journal Article in NEW BIOTECHNOLOGY

Unlocking transcription factor-based biosensors for industrial biotechnology

Wouter DemeesterBrecht De PaepeAntoni PlanasMarjan De Mey

2022

A cross-bacterial, orthogonal and tuneable gene expression toolbox for development of microbial cell factories in diverse bacterial hosts

Cara DealLien De WannemaekerBrecht De PaepeAntoni PlanasMarjan De Mey

A universal and orthogonal gene expression system enabling standardized translation initiation across the bacterial domain

Lien De WannemaekerJo MaertensBervoets IndraMarjan De Mey

A universal and orthogonal translation initiation module enabling standardized gene expression across the bacterial domain

Lien De WannemaekerJo MaertensIndra BervoetsMarjan De Mey

B-COS : key to resilient plants, animals and people

Chiara GuidiMarjan De Mey

B-COS : key to resilient plants, animals and people

Chiara GuidiMarjan De Mey

BactoHealing : a novel interpretation of the concept of healing by interweaving science, philosophy and art

Christina StadlbauerMarjan De MeyLeni van Goidsenhoven

Biosensor-driven, model-based optimization of the orthogonally expressed naringenin biosynthesis pathway

Maarten Van BremptAndries PeetersDries DuchiLien De WannemaekerJo MaertensBrecht De PaepeMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Dynamic feedback regulation for efficient membrane protein production using a small RNA-based genetic circuit in Escherichia coli

Chiara GuidiLien De WannemaekerJasmine De BaetsWouter DemeesterJo MaertensBrecht De PaepeMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Engineering transcriptional regulation in Escherichia coli using an archaeal TetR-family transcription factor

David SybersAmber Joka BernauwDiala El MasriHassan Ramadan MakladDaniel CharlierMarjan De MeyIndra BervoetsEveline Peeters

A1 Journal Article in GENE

Expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

Andries PeetersPauline PijpstraDavid SybersBrecht De PaepeEveline PeetersMarjan De Mey

Exploiting the potential of biomaterials and engineered living materials via co-cultivation and arts

Béné AmeryMarjan De Mey

Exploring glycoside phosphorylases for the production of functional carbohydrates and glycosides

Zorica UbiparipTom DesmetMarjan De Mey

Exploring the potential of fungal biomaterials via cocultivation strategies

Béné AmeryChristina StadlbauerMarjan De Mey

Exploring the structure-function relationship of C2-epimerases

Matthieu Da CostaTom DesmetMarjan De Mey

Filling the void : high-throughput development and characterization of transcription-factor based biosensors

Wouter DemeesterBrecht De PaepeAntoni PlanasMarjan De Mey

High-throughput development and characterization of transcription-factor based biosensors

Wouter DemeesterBrecht De PaepeAntoni PlanasMarjan De Mey

In vitro microbial metabolism of (+)-catechin reveals fast and slow converters with individual-specific microbial and metabolite markers

Qiqiong LiFlorence Van HerreweghenStanley Omondi OnyangoMarjan De MeyTom Van de Wiele

A1 Journal Article in JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

In vivo screening for the identification and characterization of prokaryotic, metabolite-responsive transcription factors

Amber BernauwIndra BervoetsAndries PeetersBrecht De PaepeMarjan De MeyEveline Peeters

Metabolomics to uncover stressors in amino sugar-P stress

Sofie SnoeckChiara GuidiTomek DiederenNicola ZamboniMarjan De Mey

Microbial chitooligosaccharide production for responsible and resilient agricultural practices

Chiara GuidiXevi BiarnésAntoni PlanasMarjan De Mey

New synthetic biology tools for the thermoacidophilic Archaeon Sulfolobus acidocaldarius

Andries PeetersPauline PijpstraDavid SybersBrecht De PaepeEveline PeetersMarjan De Mey

Precision fermentation for reliable, resilient and responsible agricultural practices

Chiara GuidiMarjan De Mey

ProD : a tool for predictive design of tailored promoters in Escherichia coli

Friederike MeyJim ClauwaertMaarten Van BremptMichiel StockJo MaertensWillem WaegemanMarjan De Mey

Bookchapter in Prokaryotic gene regulation : methods and protocols

Quorum sensing-based genetic circuits for the automated delay of microbial production

Jasmine De BaetsBrecht De PaepeMarjan De Mey

Quorum sensing-based switches to bypass the growth-production trade-off in microbial cell factories

Jasmine De BaetsBrecht De PaepeMarjan De Mey

Scaffolding for product yield maximization of fine chemicals in microbial cell factories

Marte EliasBabette LamoteJulie VanderstraetenBrecht De PaepeMarjan De MeyYves Briers

Scaffolding for product yield maximization of fine chemicals in microbial cell factories

Marte EliasBabette LamoteJulie VanderstraetenBrecht De PaepeMarjan De MeyYves Briers

SynBio extreme : expanding the synthetic biology toolbox of Sulfolobus acidocaldarius, a thermoacidophilic Crenarchaeon

Andries PeetersPauline PijpstraDavid SybersBrecht De PaepeEveline PeetersMarjan De Mey

The bacterial quorum sensing peptide iAM373 is a novel inducer of sarcopenia

Anton De SpiegeleerEvelien WynendaeleAmélie DescampsNathan DebunneBart BraeckmanMarjan De MeyJulie CoudenysLiesbeth CrombezFrederick VerbekeYorick Janssens et al.

A1 Journal Article in CLINICAL AND TRANSLATIONAL MEDICINE

The cross-bacterial expression system : development of parts and tools for standardized gene engineering across the bacterial domain

Lien De WannemaekerMarjan De MeyJo MaertensIndra Bervoets

The donor-dependent and colon-region-dependent metabolism of (+)-catechin by colonic microbiota in the simulator of the human intestinal microbial ecosystem

Qiqiong LiFlorence Van HerreweghenMarjan De MeyGeert GoeminneTom Van de Wiele

A1 Journal Article in MOLECULES

Towards industrial competitiveness of designer cellulosomes using the VersaTile technique

Babette LamoteEmma CremelieJulie VanderstraetenMaria João de Carvalho Maurício da FonsecaMarjan De MeyYves Briers

Towards industrial competitiveness of designer cellulosomes using the VersaTile technique

Babette LamoteEmma CremelieJulie VanderstraetenMaria João de Carvalho Maurício da FonsecaMarjan De MeyYves Briers

Unlocking the bacterial domain for industrial biotechnology applications using universal parts and tools

Lien De WannemaekerIndra BervoetsMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Unlocking the potential of chitin-rich waste for the production of specialty sugars

Sofie SnoeckChiara GuidiTomek DiederenNicola ZamboniMarjan De Mey

Unlocking the potential of non-model bacteria : a cross-bacterial gene expression toolbox

Cara DealLien De WannemaekerBrecht De PaepeAntoni PlanasMarjan De Mey

2021

Development of microbial cell factories for the production of chitooligosaccharides through integrating metabolic and protein engineering

Chiara GuidiMarjan De MeyTom Desmet

Expanding the transcriptional toolbox of the Crenarchaeon Sulfolobus acidocaldarius

Andries PeetersPauline PijpstraDavid SybersBrecht De PaepeEveline PeetersMarjan De Mey

Improving the performance of machine learning models for biotechnology : the quest for deus ex machina

Friederike MeyJim ClauwaertKirsten Van HuffelWillem WaegemanMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Chiara GuidiMarjan De Mey

Microbial production of chitosan oligosaccharides : a path towards responsible producers and societies

Chiara GuidiMarjan De Mey

Omics versus stress: Relieving microbial cells from amino sugar-P stress

Sofie SnoeckChiara GuidiNicola ZamboniMarjan De Mey

The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Friederike MeyJim ClauwaertKirsten Van HuffelWillem WaegemanMarjan De Mey

Lecture / Speech

Tuning automated switches to uncouple growth and production in Escherichia coli

Jasmine De BaetsBrecht De PaepeMarjan De Mey

2020

Countering inner-membrane stress for metabolic engineering applications

Chiara GuidiLien De WannemaekerWouter DemeesterJasmine De BaetsJo MaertensMarjan De Mey

Deep learning techniques for genome processing and annotation tasks in prokaryotes

Jim ClauwaertWillem WaegemanMarjan De MeyGerben Menschaert

Development of synthetic biology tools for Escherichia coli and metabolic engineering of synthetic methylotrophy

Bob Van HoveMarjan De Mey

Evaluating inner-membrane stress in E. coli for overexpression of functional membrane proteins

Chiara GuidiLien De WannemaekerWouter DemeesterJasmine De BaetsJo MaertensMarjan De Mey

Expanding the biosensor horizon

Wouter DemeesterBrecht De PaepeAntoni PlanasMarjan De Mey

Exploring C5-epimerases for the production of L-sugars and derivatives

Ophelia GevaertTom DesmetMarjan De Mey

Mapping and refactoring pathway control through metabolic and protein engineering : the hexosamine biosynthesis pathway

Pieter CoussementDavid BauwensGert PetersJo MaertensMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Merging metabolic engineering and synthetic biology for the development of microbial cell factories

Metabolic engineering for glycoglycerolipids production in E. coli : tuning phosphatidic acid and UDP-glucose pathways

Nuria Orive-MillaTom DelmulleMarjan De MeyMagda FaijesAntoni Planas

A1 Journal Article in METABOLIC ENGINEERING

Predictive design of sigma factor-specific promoters

Maarten Van BremptJim ClauwaertFriederike MeyMichiel StockJo MaertensWillem WaegemanMarjan De Mey

A1 Journal Article in NATURE COMMUNICATIONS

Stress, the real bottleneck of industrial biotechnology

Sofie SnoeckNicola ZamboniMarjan De Mey

Synthetic biology tools for the efficient and functional expression of membrane proteins

Chiara GuidiLien De WannemaekerJasmine De BaetsDries DuchiJo MaertensMarjan De Mey

The quest for deus ex machina : harnessing the power of machine learning for synthetic biology

Friederike MeyJim ClauwaertKirsten Van HuffelWillem WaegemanMarjan De Mey

Transport and metabolic engineering of the yeast Starmerella bombicola for enhanced production of fatty acids and their derivatives

Sylwia JezierskaInge Van BogaertMarjan De Mey

Understanding the role of stress in synthetic biology

Sofie SnoeckNicola ZamboniMarjan De Mey

Unlocking the bacterial domain for industrial biotechnology applications using orthogonal parts and tools

Lien De WannemaekerMonica TexidoBéné AmeryJo MaertensIndra BervoetsMarjan De Mey

2019

A study of different co-localization strategies for the production of flavonoids in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

An orthogonal synthetic biology toolbox for the optimisation of microbial cell factories

Maarten Van BremptAndries PeetersLien De WannemaekerDries DuchiJo MaertensMarjan De Mey

Chimeric LysR-type transcriptional biosensors for customizing ligand specificity profiles toward flavonoids

Brecht De PaepeJo MaertensBartel VanholmeMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Combinatorial assembly of multigene pathways by combining single-strand assembly with Golden Gate Assembly

David BauwensPieter CoussementJo MaertensMarjan De Mey

Bookchapter in Microbial metabolic engineering methods and protocols

Countering membrane stress for the optimisation of microbial cell factories

Chiara GuidiLien De WannemaekerWouter DemeesterJo MaertensMarjan De Mey

Development of a cross-bacterial expression system : the orthogonal translational module

Lien De WannemaekerJo MaertensMarjan De Mey

Development of a microbial technology platform for the synthesis of functional glycans

David BauwensChiara GuidiDries DuchiWouter Van BellegemSofie SnoeckPieter CoussementJo MaertensMarjan De Mey

Development of microbial cell factories for the production of chito-oligosaccharides

David BauwensSofie SnoeckChiara GuidiDries DuchiBrecht De PaepeJo MaertensMarjan De Mey

Editorial overview: Tissue, cell and pathway engineering

Eveline PeetersMarjan De Mey

Editorial material

Hacking translation : development of orthogonal ribosomes and 5' UTRs allowing standardized gene expression across the bacterial domain

Lien De WannemaekerJo MaertensMarjan De Mey

Integrating synthetic biology and metabolic engineering for the microbial production of naringenin

Metabolic editing : small measures, great impact

Gwen SwinnenAlain GoossensMaite Colinas Martinez

A1 Journal Article in CURRENT OPINION IN BIOTECHNOLOGY

Metabolic engineering strategies for improving microbial synthesis of chitooligosaccharides

David BauwensMarjan De Mey

Modulating transcription through development of semi-synthetic yeast core promoters

Thomas DecoeneSofie De MaeseneireMarjan De Mey

A1 Journal Article in PLOS ONE

Repurposing inner-membrane stress for metabolic engineering applications

Chiara GuidiLien De WannemaekerWouter DemeesterJo MaertensMarjan De Mey

Seizing control of biosynthetic pathways in Escherichia coli

Maarten Van BremptMarjan De Mey

2018

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra BervoetsMaarten Van BremptBob Van HoveJo MaertensMarjan De MeyDaniel Charlier

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Indra BervoetsMaarten Van BremptKatleen Van NeromBob Van HoveJo MaertensMarjan De MeyDaniel Charlier

A1 Journal Article in NUCLEIC ACIDS RESEARCH

A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Maarten Van BremptIndra BervoetsKatleen Van NeromBob Van HoveJo MaertensDaniel CharlierMarjan De Mey

A sigma factor toolbox for orthogonal gene expression in Escherichia coli : enabling modular control of complex heterologous pahtways

Maarten Van BremptIndra BervoetsKatleen Van NeromBob Van HoveJo MaertensDaniel CharlierMarjan De Mey

Challenges in the microbial production of flavonoids

Tom DelmulleSofie De MaeseneireMarjan De Mey

A1 Journal Article in PHYTOCHEMISTRY REVIEWS

Development of N-acetylneuraminic acid responsive biosensors based on the transcriptional regulator NanR

Gert PetersBrecht De PaepeLien De WannemaekerDries DuchiJo MaertensJeroen LammertynMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Direct combinatorial pathway optimization

David BauwensPieter CoussementMarjan De MeyJo Maertens

Evaluating inner-membrane stress in E. coli

Chiara GuidiLien De WannemaekerJo MaertensMarjan De Mey

Expanding the portfolio of synthetic biology tools in Saccharomyces cerevisiae for the optimization of heterologous production pathways at the transcriptional and translational level

Thomas DecoeneMarjan De MeySofie De Maeseneire

Exploring of the feature space of de novo developed post-transcriptional riboregulators

Gert PetersJo MaertensJeroen LammertynMarjan De Mey

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

Modularization and response curve engineering of a naringenin-responsive transcriptional biosensor

Brecht De PaepeJo MaertensBartel VanholmeMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Standardization in synthetic biology : an engineering discipline coming of age

Thomas DecoeneBrecht De PaepeJo MaertensPieter CoussementGert PetersSofie De MaeseneireMarjan De Mey

A1 Journal Article in CRITICAL REVIEWS IN BIOTECHNOLOGY

Tailor-made transcriptional biosensors for optimising microbial production of specialised plant metabolites in Escherichia coli

Brecht De PaepeMarjan De MeyBartel Vanholme

Toward predictable 5′UTRs in Saccharomyces cerevisiae : development of a yUTR calculator

Thomas DecoeneGert PetersSofie De MaeseneireMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Towards orthogonal and standardized translation across the bacterial domain

Lien De WannemaekerJo MaertensMarjan De Mey

Yeast organelle engineering : a flavonoid case-study

Tom DelmulleSofie De MaeseneireMarjan De Mey

2017

A sigma factor toolbox enables orthogonal gene expression for modular control of complex pathways in Escherichia coli

Indra BervoetsMaarten Van BremptBob Van HoveJo MaertensMarjan De MeyDaniel Charlier

Co-localization of enzymes for improved production of flavonoids in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Development of microbial cell factories for the production of chito-oligosaccharides

David BauwensChiara GuidiWouter Van BellegemDries DuchiJo MaertensMarjan De Mey

Direct combinatorial pathway optimization

Pieter CoussementDavid BauwensJo MaertensMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Expanding the metabolic engineering toolbox to rationally and predictably modulate gene expression at the transcriptional and translational level

Gert PetersMarjan De MeyJeroen Lammertyn

Heterologous expression and characterization of plant taxadiene-5α-hydroxylase (CYP725A4) in Escherichia coli

John Edward RouckBradley Walters BiggsAmogh KambalyalWilliam R ArnoldMarjan De MeyParayil Kumaran AjikumarAditi Das

A1 Journal Article in PROTEIN EXPRESSION AND PURIFICATION

Metabolic and protein engineering strategies for glycolipid synthesis

Nuria OriveMarjan De MeyMagda FaijesAntoni Planas

Metabolic Engineering @ CSB : platform tools and technologies for the production of complex metabolites

David BauwensWouter Van BellegemJo MaertensMarjan De Mey

Microbial cell factories for the production of specialised plant metabolites

Frederik De BruynMaarten Van BremptBrecht De PaepeJo MaertensDavid BauwensPieter CoussementChin Giaw LimBradley Walter BiggsRyan PhilippeParayil Kumaran Ajikumar et al.

Recursive DNA assembly using protected oligonucleotide duplex assisted cloning (PODAC)

Bob Van HoveChiara GuidiLien De WannemaekerJo MaertensMarjan De Mey

A1 Journal Article in ACS SYNTHETIC BIOLOGY

Tailor-made transcriptional biosensors for optimizing microbial cell factories

Brecht De PaepeJo MaertensBartel VanholmeMarjan De Mey

Tailor-made transcriptional biosensors for optimizing microbial cell factories

Brecht De PaepeGert PetersPieter CoussementJo MaertensMarjan De Mey

A1 Journal Article in JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

The use of shallow convolutional neural networks in predicting promotor strength in Eschericha coli

Jim ClauwaertMichiel StockMarjan De MeyWillem Waegeman

Towards predictable 5’-UTRs in Saccharomyces cerevisiae

Thomas DecoeneGert PetersSofie De MaeseneireMarjan De Mey

2016

Automated de novo design of ligand responsive RNA devices

Gert PetersJo MaertensJeroen LammertynMarjan De Mey

Automated design of ligand responsive RNA devices

Gert PetersJo MaertensJeroen LammertynMarjan De Mey

Comparative fluxome and metabolome analysis for overproduction of succinate in Escherichia coli

Hilal Taymaz-NikerelMarjan De MeyGino BaartJo MaertensMaria Remedios Foulquié-MorenoDaniel CharlierJoseph J HeijnenWalter M van Gulik

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Constructing artificial CRISPR guide RNA arrays using methylated oligonucleotides

Bob Van HoveLien De WannemaekerJo MaertensMarjan De Mey

Creating a ready-to-use sigma factor toolbox for pathway control

Maarten Van BremptIndra BervoetsJo MaertensDaniel CharlierMarjan De Mey

Efficient utilization of pentoses for bioproduction of the renewable two-carbon compounds ethylene glycol and glycolate

Brian PereiraZheng-Jun LiMarjan De MeyChin Giaw LimHaoran ZhangClaude HoeltgenGregory Stephanopoulos

A1 Journal Article in METABOLIC ENGINEERING

Engineering a novel biosynthetic pathway in Escherichia coli for production of renewable ethylene glycol

Brian PereiraHaoran ZhangMarjan De MeyChin Giaw LimZheng-Jun LiGregory Stephanopoulos

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Engineering transcription in S. cerevisiae through random assembly of an UAS library

Thomas DecoeneNathalie CuypersMarjan De MeySofie De Maeseneire

High yield 1,3-propanediol production by rational engineering of the 3-hydroxypropionaldehyde bottleneck in Citrobacter werkmanii

Veerle MaervoetSofie De MaeseneireFatma Gizem AvcıJoeri BeauprezWim SoetaertMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Iterative cloning using a methylation protected oligonucleotide duplex

Bob Van HoveChiara GuidiJo MaertensMarjan De Mey

Microbial production of natural plant metabolites: decorating scaffolds

Not just PCR: using modified oligonucleotides for recursive cloning

Bob Van HoveChiara GuidiLien De WannemaekerJo MaertensMarjan De Mey

Novel DNA and RNA elements

Julia PitzerBob Van HoveAaron M LoveParayil Kumaran AjikumarMarjan De MeyAnton Glieder

Bookchapter in Synthetic biology

Orthogonal assays clarify the oxidative biochemistry of Taxol P450 CYP725A4

Bradley Walters BiggsJohn Edward RouckAmogh KambalyalWilliam ArnoldChin Giaw LimMarjan De MeyMark O'Neil-JohnsonCourtney M StarksAditi DasParayil Kumaran Ajikumar

A1 Journal Article in ACS CHEMICAL BIOLOGY

Orthogonal gene expression : promoter libraries linked to different sigma factors which are orthogonal between each other and towards the host

Indra BervoetsMaarten Van BremptJo MaertensMarjan De MeyDaniel Charlier

Orthogonal gene expression : promoter libraries linked to different sigma factors which are orthogonal between each other and towards the host

Indra BervoetsMaarten Van BremptJo MaertensMarjan De MeyDaniel Charlier

Overcoming heterologous protein interdependency to optimize P450-mediated Taxol precursor synthesis in Escherichia coli

Bradley Walters BiggsChin Giaw LinKristen SaglinaniSmriti ShankarGregory StephanopoulosMarjan De MeyParayil Kumaran Ajikumar

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pathways to chito-oligosaccharides production : integrating synthetic biology and metabolic engineering for pathway optimization

Pieter CoussementWim SoetaertMarjan De Mey

Programming biology: expanding the toolset for the engineering of transcription

Bob Van HoveAaron M LoveParayil Kumaran AjikumarMarjan De Mey

Bookchapter in Synthetic biology

Protein expression modulation in S. cerevisiae through random assembly of an UAS library

Thomas DecoeneNathalie CuypersMarjan De MeySofie De Maeseneire

Recursive cloning for the assembly of biosynthetic pathways and artificial CRISPR arrays

Bob Van HoveLien De WannemaekerChiara GuidiJo MaertensMarjan De Mey

Synthetic biology for plant chemicals

Nicola PatronMarjan De Mey

Synthetic protein scaffolds for flavonoid production in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Synthetic protein scaffolds for flavonoid production in Saccharomyces cerevisiae

Tom DelmulleMarjan De MeySofie De Maeseneire

Tailor-made transcriptional biosensors

Brecht De PaepeJo MaertensBartel VanholmeMarjan De Mey

2015

Biotechnological advances in UDP-sugar based glycosylation of small molecules

Frederik De BruynJo MaertensJoeri BeauprezWim SoetaertMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Developing a versatile genome editing tool for C. glutamicum to enhance chito-oligosaccharides production

David BauwensBob Van HovePieter CoussementJo MaertensMarjan De Mey

Development of an in vivo glucosylation platform by coupling production to growth: production of phenolic glucosides by a glycosyltransferase of Vitis vinifera

Frederik De BruynBrecht De PaepeJo MaertensJoeri BeauprezPieter De CockerStein MinckeChristian StevensMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY AND BIOENGINEERING

Engineering eukaryotic transcription in yeast: towards the minimal core promoter

Thomas DecoeneMarjan De MeySofie De Maeseneire

Metabolic engineering of Escherichia coli into a versatile glycosylation platform : production of bio‐active quercetin glycosides

Frederik De BruynMaarten Van BremptJo MaertensWouter Van BellegemDries DuchiMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

Putting RNA to work: translating RNA fundamentals into biotechnological engineering practice

Gert PetersPieter CoussementJo MaertensJeroen LammertynMarjan De Mey

A1 Journal Article in BIOTECHNOLOGY ADVANCES

Use of sigma factors from Bacillus subtilis in the development of an orthogonal expression system in Escherichia coli

Indra BervoetsMarjan De MeyDaniel Charlier

2014

1,3-propanediol production with Citrobacter werkmanii DSM17579 : effect of a dhaD knock-out

Veerle MaervoetSofie De MaeseneireFatma Gizem AvcıJoeri BeauprezWim SoetaertMarjan De Mey

A1 Journal Article in MICROBIAL CELL FACTORIES

A balancing act: building the aurone pathway in Saccharomyces cerevisiae

Thomas DecoeneMarjan De MeySofie De Maeseneire

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas DecoeneMarjan De MeySofie De Maeseneire

Assembly and optimization of synthetic pathways in Saccharomyces cerevisiae: aurones as case study

Thomas DecoeneMarjan De MeySofie De Maeseneire

Biosensors and high throughput metabolic engineering for the production of specialized plant metabolites in E. coli

Brecht De PaepeBartel VanholmeMarjan De Mey

Biotechnological production of natural zero-calorie sweeteners

Ryan N PhilippeMarjan De MeyJeff AndersonParayil Kumaran Ajikumar

A1 Journal Article in CURRENT OPINION IN BIOTECHNOLOGY

Building a glycosylation platform in E. coli through metabolic engineering

Frederik De BruynWim SoetaertMarjan De Mey

Creating a novel and versatile glycosylation platform in E. coli

Frederik De BruynBrecht De PaepeMaarten Van BremptPieter De CockerJo MaertensJoeri BeauprezWim SoetaertMarjan De Mey

Expanding the bio-production palette: how to speed up the construction and optimization of novel pathways

Pieter CoussementJo MaertensJoeri BeauprezWouter Van BellegemMarjan De Mey

Metabolic engineering @ Inbio.be : platform tools and technologies for the production of complex metabolites

Sofie De MaeseneireJo MaertensMarjan De Mey

Microbial production of renewable monoethylene glycol

Brian PereiraMarjan De MeyChin Giaw LimHuoran ZhangGregory Stephanopoulos

Minimizing metabolic burden caused by heterologous expression of synthetic pathways in E. coli: identification of stress sensors

Bob Van HoveMarjan De Mey

Multivariate modular metabolic engineering for pathway and strain optimization

Bradley Walters BiggsBrecht De PaepeChristine Nicole S SantosMarjan De MeyParayil Kumaran Ajikumar

A1 Journal Article in CURRENT OPINION IN BIOTECHNOLOGY

One step DNA assembly for combinatorial metabolic engineering

Pieter CoussementJo MaertensJoeri BeauprezWouter Van BellegemMarjan De Mey

A1 Journal Article in METABOLIC ENGINEERING

Splitting the E. coli metabolism for the production of fructose-6-P derived chemicals

Pieter CoussementJo MaertensJoeri BeauprezMathias DuhamelWouter Van BellegemDries Van HerpeMarjan De MeyWim Soetaert

Steering prokaryotic gene expression using engineered riboswitches

Gert PetersJo MaertensJoeri BeauprezRuben WalcariusJeroen LammertynMarjan De Mey

Unraveling the dha cluster in Citrobacter werkmanii: comparative genomic analysis of bacterial 1,3-propanediol biosynthesis clusters

Veerle MaervoetSofie De MaeseneireWim SoetaertMarjan De Mey

A1 Journal Article in BIOPROCESS AND BIOSYSTEMS ENGINEERING

Use of sigma factor M from Bacillus subtilis in the development of an orthogonal expression system in Escherichia coli

Indra BervoetsMarjan De MeyDaniel Charlier

2013

A computational approach to building gene silencing modules

Gert PetersJo MaertensJoeri BeauprezJeroen LammertynMarjan De Mey

Bioprocess optimization for bacterial synthesis of natural products

Marjan De MeySangram YadavWenhai XiaoKrishna PatelRyan PhilippeAjikumar Parayil

Building a glucosylation platform in E. coli through Metabolic Engineering

Frederik De BruynBrecht De PaepeJoeri BeauprezJo MaertensWim SoetaertMarjan De Mey

Changes in substrate availability in Escherichia coli lead to rapid metabolite, flux and growth rate responses

Hilal Taymaz-NikerelMarjan De MeyGino BaartJo MaertensJoseph J HeijnenWalter Van Gullik

A1 Journal Article in METABOLIC ENGINEERING

Fast and combinatorial construction and optimization of synthetic pathways

Pieter CoussementJo MaertensJoeri BeauprezWouter Van BellegemMarjan De Mey

Increasing recombinant protein production in Escherichia coli K12 through metabolic engineering

Hendrik WaegemanStijn De LausnayJoeri BeauprezJo MaertensMarjan De MeyWim Soetaert

A1 Journal Article in NEW BIOTECHNOLOGY

Integrating the protein and metabolic engineering toolkits for next-generation chemical biosynthesis

Christopher M PirieMarjan De MeyKristala L Jones PratherParayil Kumaran Ajikumar

A1 Journal Article in ACS CHEMICAL BIOLOGY

Microbial production of renewable monoethylene glycol

Brian PereiraMarjan De MeyChin Giaw LimHaoran ZhangGregory Stephanopoulos

Tools for engineering complex natural product pathways in bacteria

Chin Giaw LimMarjan De MeyAjikumar Parayil

Towards a carbon-negative sustainable bio-based economy

Bartel VanholmeTom DesmetFrederik RonsseKorneel RabaeyFrank Van BreusegemMarjan De MeyWim SoetaertWout Boerjan

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

Unraveling the Leloir pathway of Bifidobacterium bifidum: significance of the uridylyltransferases

Frederik De BruynJoeri BeauprezJo MaertensWim SoetaertMarjan De Mey

A1 Journal Article in APPLIED AND ENVIRONMENTAL MICROBIOLOGY

2012

Bioinformatics tools for the design of antisense RNA and aptamers

Gert PetersJo MaertensJoeri BeauprezJeroen LammertynMarjan De Mey

Citrobacter werkmanii, a new candidate for the production of 1,3-propanediol: strain selection and carbon source optimization

Veerle MaervoetJoeri BeauprezSofie De MaeseneireWim SoetaertMarjan De Mey

A1 Journal Article in GREEN CHEMISTRY

Comparison of colony PCR methods for yeast

Sofie De MaeseneireWim SoetaertMarjan De Mey

Effect of iclR and arcA deletions on physiology and metabolic fluxes in Escherichia coli BL21 (DE3)

Hendrik WaegemanJo MaertensJoeri BeauprezMarjan De MeyWim Soetaert

A1 Journal Article in BIOTECHNOLOGY LETTERS

Engineering terpenoid natural product biosynthesis in Escherichia coli

Ajikumar ParayilChin Giaw LimMarjan De MeyGregory Stephanopoulos

Enhanced production of 1,3-propanediol in Citrobacter sp. through metabolic engineering

Veerle MaervoetMarjan De MeyWim Soetaert

Flux and metabolite flexibility in Escherichia coli at seconds time scale in response to rapid shifts of substrate excess

Hilal Taymaz-NikerelMarjan De MeyGino BaartJo MaertensJoseph J HeijnenWalter M van Gulik

In vivo production of specialty carbohydrates: a metabolic engineering and synthetic biology approach

Joeri BeauprezJo MaertensGaspard LequeuxSofie De MaeseneireHendrik WaegemanPieter CoussementFrederik De BruynMarjan De MeyWim Soetaert

Increasing recombinant protein production in E. coli by an alternative method to reduce acetate

Hendrik WaegemanMarjan De Mey

Bookchapter in Advances in applied biotechnology

Oligo-based Gibson assembly : a new way of creating expression variability

Pieter CoussementJo MaertensJoeri BeauprezWim SoetaertMarjan De Mey

The future of metabolic engineering and synthetic biology: towards a systematic practice

Vikramaditya G YadavMarjan De MeyChin Giaw LimParayil Kumaran AjikumarGregory Stephanopoulos

A1 Journal Article in METABOLIC ENGINEERING

Unraveling the Leloir pathway in Bifidobacterium bifidum

Frederik De BruynJoeri BeauprezJo MaertensWim SoetaertMarjan De Mey

2011

A constitutive expression system for high-throughput screening

Dirk AertsTom VerhaegheMarjan De MeyTom DesmetWim Soetaert

A1 Journal Article in ENGINEERING IN LIFE SCIENCES

Effect of iclR and arcA knockouts on biomass formation and metabolic fluxes in Escherichia coli K12 and its implications on understanding the metabolism of Escherichia coli BL21 (DE3)

Hendrik WaegemanJoeri BeauprezHelena MoensJo MaertensMarjan De MeyMaria R Foulque-MorenoJoseph HeijnenDaniel CharlierWim Soetaert

A1 Journal Article in BMC MICROBIOLOGY

Enhancing the microbial conversion of glycerol to 1,3-propanediol using metabolic engineering

Veerle MaervoetMarjan De MeyJoeri BeauprezSofie De MaeseneireWim Soetaert

A1 Journal Article in ORGANIC PROCESS RESEARCH & DEVELOPMENT

Increasing recombinant protein production in Escherichia coli K12 by increasing the biomass yield of the host cell

Hendrik WaegemanMarjan De MeyWim Soetaert

Metabolic engineering of Escherichia coli K12 for improving growth and recombinant protein production

Hendrik WaegemanWim SoetaertMarjan De Mey

2010

13C-constrained metabolic flux analysis of a high biomass producer in glucose abundant and glucose limited conditions

Hendrik WaegemanJoeri BeauprezMarjan De MeyWim Soetaert

Analysis of short-term dynamic in vivo response of E. coli to alternative substrate perturbations

Hilal Taymaz-NikerelMarjan De MeyGino BaartJo MaertensWalter M van GulikJoseph J Heijnen

Catching prompt metabolite dynamics in Escherichia coli with the BioScope at oxygen rich conditions

Marjan De MeyHilal Taymaz-NikerelGino BaartHendrik WaegemanJo MaertensJoseph J HeijnenWalter M van Gulik

A1 Journal Article in METABOLIC ENGINEERING

Catching prompt metabolite dynamics of E. coli with the BioScope at oxygen rich conditions

Marjan De MeyHilal Taymaz-NikerelGino BaartHendrik WaegemanJo MaertensWim SoetaertJoseph J HeijnenWalter M van Gulik

Designer bugs : a platform for the production of tailor-made chemicals from renewable resources

Marjan De MeyJoeri BeauprezGaspard LequeuxJo MaertensHendrik WaegemanWim Soetaert

Designer bugs: a new metabolic engineered strain to produce proteins

Marjan De MeyJoeri BeauprezGaspard LequeuxJo MaertensHendrik WaegemanWim Soetaert

Determination of the dha regulon of C. werkmanii and characterization of ΔdhaD

Veerle MaervoetMarjan De MeyWim Soetaert

Importance of the cytochrome P450 monooxygenase CYP52 family for the sophorolipid-producing yeast Candida bombicola (vol 9, pg 87, 2009)

Inge Van BogaertMarjan De MeyDirk DevelterWim SoetaertErick Vandamme

Microbial succinic acid production: natural versus metabolic engineered producers

Joeri BeauprezMarjan De MeyWim Soetaert

A1 Journal Article in PROCESS BIOCHEMISTRY

Promoter knock-in: a novel rational method for the fine tuning of genes

Marjan De MeyJo MaertensSarah BoogmansWim SoetaertErick VandammeRaymond CuninMaria Foulquie-Moreno

A1 Journal Article in BMC BIOTECHNOLOGY

Transient metabolic modeling of Escherichia coli MG1655 and MG1655 Delta ackA-pta, Delta poxB Delta pppc ppc-p37 for recombinant beta-galactosidase production

Marjan De MeyGaspard LequeuxJoeri BeauprezJo MaertensHendrik WaegemanInge Van BogaertMR Foulquie-MorenoDaniel CharlierWim SoetaertPeter A Vanrolleghem et al.

A1 Journal Article in JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Validation study of 24 deepwell microtiterplates to screen libraries of strains in metabolic engineering

Hendrik WaegemanJoeri BeauprezJo MaertensMarjan De MeyLieven DemolderMaria R Foulquié-MorenoNico BoonDaniel CharlierWim Soetaert

A1 Journal Article in JOURNAL OF BIOSCIENCE AND BIOENGINEERING

2009

Development and application of a differential method for reliable metabolome analysis in Escherichia coli

Hilal Taymaz-NikerelMarjan De MeyCor RasAngela ten PierickReza M SeifarJan C van DamJoseph J HeijnenWalter M van Gulik

A1 Journal Article in ANALYTICAL BIOCHEMISTRY

Development of a technology platform for the production of chemicals from renewable resources

Marjan De MeyJoeri BeauprezAditya BhagwatSarah BoogmansBrecht DonckelsMaria R Foulquie-MorenoGaspard LequeuxJo MaertensHilal Taymaz-NikerelEllen Van Horen et al.

Importance of the cytochrome P450 monooxygenase CYP52 family for the sophorolipid producing yeast Candida bombicola

Inge Van BogaertMarjan De MeyDirk DevelterWim SoetaertErick Vandamme

A1 Journal Article in FEMS YEAST RESEARCH

Metabolic engineering of E. coli for the production of chemicals

Marjan De MeyJoeri BeauprezAditya BhagwatSarah BoogmansBrecht DonckelsMaria R. Foulquie-MorenoGaspard LequeuxJo MaertensHilal Taymaz-NikerelEllen Van Horen et al.

2008

Comparison of protein quantification and extraction methods suitable for E-coli cultures

Marjan De MeyGaspard LequeuxJo MaertensCassandra De MuynckWim SoetaertErick Vandamme

A1 Journal Article in BIOLOGICALS

Development and application of a differential method for reliable metabolome analysis in Escherichia coli

Hilal Taymaz-NikerelMarjan De MeyCor RasAngela ten PierickReza M SeifarJan C van DamJoseph J HeijnenWalter M van Gulik

Development of an accurate method for intracellular metabolome analysis in Escherichia coli for in vivo kinetic analysis

Hilal Taymaz-NikerelMarjan De MeyCor RasAngela ten PierickReza M SeifarJan C van DamJoseph J HeijnenWalter M van Gulik

Dynamic linlog modelling of the central metabolism of E. coli: estimation of elasticities from pulse-response data using gproms

Kristel BernaertsHilal Taymaz-NikerelMarjan De MeyJoseph J. HeijnenWalter M. van GulikPeter J.T. Verheijen

Improving industrial biotechnological production processes using modelling based metabolic engineering

Gino BaartJoeri BeauprezJo MaertensMaria R Foulquie-MorenoHendrik WaegemanMarjan De MeyHilal Taymaz-NikerelGaspard LequeuxAditya BhagwatBrecht Donckels et al.

Metabolic engineering and metabolic modeling of Escherichia coli for the production of chemicals from renewable resources (MEMORE)

Maria R Foulquie-MorenoGino BaartJo MaertensJoeri BeauprezAditya BhagwatBrecht DonckelsHilal Taymaz-NikerelGaspard LequeuxMarjan De MeyHendrik Waegeman et al.

Metabolic engineering and metabolic modeling of Escherichia coli for the production of chemicals from renewable resources (MEMORE)

Joseph J HeijnenGino BaartJo MaertensAditya BhagwatBrecht DonckelsGaspard LequeuxDirk De PauwPeter VanrolleghemBernard De BaetsJoeri Beauprez et al.

Modelling based metabolic engineering for optimization of succinate production in Escherichia coli

Gino BaartJoeri BeauprezJo MaertensMaria R. Foulquie-MorenoHendrik WaegemanMarjan De MeyHilal Taymaz-NikerelGaspard LequeuxAditya BhagwatBrecht Donckels et al.

Wash-in of U-13C glucose into E. coli cells cultivated in a carbon limited chemostat

Marjan De MeyHilal Taymaz-NikerelGaspard LequeuxCor RasJan van DamWouter van WindenPeter VerheijenWalter M van GulikJoseph J Heijnen

2007

Comparison of different strategies to reduce acetate formation in Escherichia coli

Marjan De MeyGaspard LequeuxJoeri BeauprezJo MaertensEllen Van HorenWim SoetaertPeter A VanrolleghemErick Vandamme

A1 Journal Article in BIOTECHNOLOGY PROGRESS

Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering

Marjan De MeyJo MaertensGaspard LequeuxWim SoetaertErick Vandamme

A1 Journal Article in BMC BIOTECHNOLOGY

Development of a selection system for the detection of L-ribose isomerase expressing mutants of Escherichia coli

Cassandra De MuynckJef Van der BorghtMarjan De MeySofie De MaeseneireInge Van BogaertJoeri BeauprezWim SoetaertErick Vandamme

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic modeling and engineering of Escherichia coli to reduce acetate formation in recombinant DNA-fermentations

Marjan De MeyErick VandammeWim Soetaert

Microbial metabolomics: past, present and future methodologies

Mlawule R MashegoKarl RumboldMarjan De MeyErick VandammeWim SoetaertJoseph J Heijnen

A1 Journal Article in BIOTECHNOLOGY LETTERS

Minimizing acetate formation in E. coli fermentations

Marjan De MeySofie De MaeseneireWim SoetaertErick Vandamme

A1 Journal Article in JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Modeling and engineering of Escherichia coli to minimize acetate formation in recombinant DNA-fermentations

A4 Journal Article in TIJDSCHRIFT BVLT - REVUE ABTL

Wash-in of U-13C glucose into E. coli cells cultivated in a carbon limited chemostat

2006

A novel system for the fine tuning of genes

M Foulquié MorenoMarjan De MeyS BoogmansJoeri BeauprezWim SoetaertErick VandammeR Cunin

A novel system for the fine tuning of genes

Marjan De MeyRaymond CuninWim SoetaertErick VandammeMaria R Foulquie-Moreno

Cloning, sequence analysis and heterologous expression of the Myrothecium gramineum orotidine-5'-monophosphate decarboxylase gene

Sofie De MaeseneireManu De GroeveThierry DauvrinMarjan De MeyWim SoetaertErick Vandamme

A1 Journal Article in FEMS MICROBIOLOGY LETTERS

Comparison of DNA and RNA quantification methods suitable for parameter estimation in metabolic modeling of microorganisms

Marjan De MeyGaspard LequeuxJo MaertensSofie De MaeseneireWim SoetaertErick Vandamme

A1 Journal Article in ANALYTICAL BIOCHEMISTRY

First International Symposium on System Biology: From Genomes to IN silico and back

M FOULQUIé MORENOMarjan De MeyS BOOGMANSJoeri BeauprezWim SoetaertErick VandammeR CUNIN

Metabolic characterisation of E. coli citrate synthase and phosphoenolpyruvate carboxylase mutants in aerobic cultures

Sofie De MaeseneireMarjan De MeySofie VandedrinckErick Vandamme

A1 Journal Article in BIOTECHNOLOGY LETTERS

Transport kinetics of ectoine, an osmolyte produced by Brevibacterium epidermis

Annelies OnraedtMarjan De MeyBart WalcariusWim SoetaertErick Vandamme

A1 Journal Article in BIOTECHNOLOGY LETTERS

2005

Cloning and Sequence Analysis of the OMP-Decarboxylase Gene of Myrothecium gramineum

Sofie De MaeseneireMarjan De MeyManu De GroeveT DAUVRINWim SoetaertErick Vandamme

Comparison of methods for nucleic acid quantitation

Marjan De MeySofie De MaeseneireJoeri BeauprezKatja Van NieulandWim SoetaertErick Vandamme

Comparison of rapid extraction methods for high quality fungal DNA for PCR-applications

Sofie De MaeseneireMarjan De MeyManu De GroeveT DAUVRINWim SoetaertErick Vandamme

Evaluation of current methods for nucleic acid quantification

Marjan De MeyGaspard LequeuxKatja Van NieulandJoeri BeauprezSofie De MaeseneireJo MaertensWim SoetaertErick Vandamme

Evaluation of different methods for nucleic acids quantification

Marjan De MeySofie De MaeseneireKatja Van NieulandGaspard LequeuxWim SoetaertErick Vandamme

Quantification of nucleic acids

Marjan De MeySofie De MaeseneireJoeri BeauprezKatja Van NieulandWim SoetaertErick Vandamme

The orotidine monophosphate decarboxylase gene of Myrothecium gramineum: cloning and sequence analysis

Sofie De MaeseneireMarjan De MeyManu De GroeveT DauvrinWim SoetaertErick Vandamme

2004

An artificial promoter library for Escherichia coli

Marjan De MeyKatja Van NieulandErick Vandamme

An artificial promoter library for Escherichia coli

Marjan De MeyKatja Van NieulandJo MaertensWim SoetaertErick Vandamme

Dynamic experiment design for identification of the lin-log kinetic parameters for the metabolic network of Escherichia coli

Jo MaertensS VAN DEN BROECKAditya BhagwatGaspard LequeuxMarjan De MeyPeter Vanrolleghem

Modelling and Metabolic Engineering of Micro-Organisms (M²EMO)

Wim SoetaertP VANROLLEGHEMMarjan De MeyJo MaertensErick Vandamme

Promoter engineering: a useful tool for fine tuning gene expression in Escherichia coli

Marjan De MeyKatja Van NieulandJo MaertensWim SoetaertErick Vandamme