Research Explorer

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Researcher

Marie Joossens

Publications & Research Data

Awards & Distinctions

137 Results

2026

Campylobacter in fresh retail meat : species diversity assessment using a modified filter method compared with ISO 10272:2017

Lore HeyvaertMuhammad Zeeshan ZafarMarie JoossensKurt Houf

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Host factors dictate gut microbiome alterations in chronic kidney disease more strongly than kidney function

H. KrukowskiSophie ValkenburgA. Vich VilaL. F. MacielJ. F. Vázquez-CastellanosTessa GrypMarie JoossensWim Van BiesenFrancis VerbekeM. Derrien et al.

A1 Journal Article in NATURE MICROBIOLOGY

The campylobacter-microbiome-undernutrition nexus in young children with diarrhea : zoonotic transmission and enteric health

Wondemagegn Mulu LingerewMarie JoossensKurt HoufMulugeta Azene

The role of the oxytocinergic system in oral microbiome composition in children with autism : evidence from a randomized controlled trial of intranasal oxytocin

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeJellina PrinsenJean SteyaertBart BoetsMarie JoossensKaat Alaerts

The role of the oxytocinergic system in oral microbiome composition in children with autism : evidence from a randomized controlled trial of intranasal oxytocin

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeJellina PrinsenJean SteyaertBart BoetsMarie JoossensKaat Alaerts

A1 Journal Article in TRANSLATIONAL PSYCHIATRY

2025

Bridging the diversity between 16S rRNA amplicon sequencing and cultivation studies

Michiel Van de VlietCharlotte PeetersMargo CnockaertLisa JoosMarie JoossensPeter Vandamme

Campylobacter infection differences associated with characteristic fecal microbiome signatures of Ethiopian under-five children with acute diarrhea

Wondemagegn Mulu LingerewDoris VandeputteKurt HoufMulugeta KibretMarie Joossens

Comparative evaluation of microbiological quality and pathogen prevalence in fresh beef, pork, and chicken meat at retail from butcheries and supermarkets

Muhammad Zeeshan ZafarMarie JoossensLore HeyvaertKurt Houf

A1 Journal Article in JOURNAL OF APPLIED MICROBIOLOGY

Microbiome-connectome interactions in autism : a multi-modal investigation of the brain, bacteria and behavior

Margaux EvenepoelKaat AlaertsMarie JoossensBart BoetsJellina Prinsen

RIPK1 ablation in T cells results in spontaneous enteropathy and TNF-driven villus atrophy

Jelle HuysentruytWolf SteelsMario Ruiz PérezBruno VerstraetenTatyana DivertKayleigh FliesKelly LemeireNozomi TakahashiElke De BruynMarie Joossens et al.

A1 Journal Article in EMBO REPORTS

Skin microbiome-editing with novel antibiotics towards lower mosquito attraction

Magali De MuynckJoni BertRoberto VázquezChris CallewaertMarie JoossensYves Briers

The gut microbial community of solitary bees is acquired through host and location filtering

Gowri Amanda HettiarachchiTina TuerlingsTimothy WeekersLeon MarshallNicolas LeclercqThomas James WoodDiego CejasMaxence GerardNicolas J. VereeckenDenis Michez et al.

A1 Journal Article in MICROBIAL ECOLOGY

2024

Aggregatibacter is inversely associated with inflammatory mediators in sputa of patients with chronic airway diseases and reduces inflammation in vitro.

Ellen GoeteynSteven L. TaylorAlison DickerLaura BolléMerel WautersMarie JoossensEva Van BraeckelJodie L. SimpsonLucy BurrJames D. Chalmers et al.

A1 Journal Article in RESPIRATORY RESEARCH

Campylobacter jejuni and growth impairment in young children with acute diarrhea

Wondemagegn Mulu LingerewKurt HoufMulugeta KibretMarie Joossens

Campylobacter occurrence and antimicrobial resistance profile in under five-year-old diarrheal children, backyard farm animals, and companion pets

Wondemagegn Mulu LingerewMarie JoossensMulugeta KibretAnne-Marie Van Den AbeeleKurt Houf

A1 Journal Article in PLOS NEGLECTED TROPICAL DISEASES

Diagnosis-related differences in oral microbiota and associations with clinical characteristics in autistic versus non-autistic children

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJellina PrinsenJean SteyaertBart BoetsKaat AlaertsMarie Joossens

Impact of potato trimming acidification on protein characteristics and bacterial community during long-term storage

Baptiste VanleenhoveBen Van den WouwerEllen VerweeLisa SlachmuyldersMarie JoossensKristof BrijsKoen DewettinckSteven De MeesterKatleen Raes

A1 Journal Article in LWT-FOOD SCIENCE AND TECHNOLOGY

Isolation and detection of the emerging pathogen Escherichia albertii in clinical stool samples and the potential transmission by meat samples in retail

Muhammad Zeeshan ZafarKlara De RauwAnne-Marie Van Den AbeeleMarie JoossensLore HeyvaertKurt Houf

A1 Journal Article in MICROORGANISMS

Oral microbiota in autistic children : diagnosis related differences and associations with clinical characteristics

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJelina PrinsenElise TuerlinckxJean SteyaertBart BoetsKaat AlaertsMarie Joossens

Oral microbiota in autistic children : diagnosis-related differences and associations with clinical characteristics

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJellina PrinsenElise TuerlinckxJean SteyaertBart BoetsKaat AlaertsMarie Joossens

A2 Journal Article in BRAIN BEHAVIOR & IMMUNITY-HEALTH

Oral microbiota in autistic children and the impact of lifestyle variables

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJellina PrinsenElise TuerlinckxJean SteyaertBart BoetsKaat AlaertsMarie Joossens

Oral microbiota in autistic versus non-autistic children and associations with clinical characteristics

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJellina PrinsenJean SteyaertBart BoetsKaat AlaertsMarie Joossens

The bifidogenic effect of 2’fucosyllactose is driven by age-specific bifidobacterium species, demonstrating age as an important factor for gut microbiome targeted precision medicine

Jenni FirrmanStef DeyaertKarley K. MahalakLinShu LiuAurélien BaudotMarie JoossensJonas PoppeSimon J. S. CameronPieter Van den Abbeele

A1 Journal Article in NUTRIENTS

2023

A case study of the diet-microbiota-parasite interplay in bumble bees

Antoine GekièreMaryse VanderplanckGowri Amanda HettiarachchiIrène SemayPascal GerbauxDenis MichezMarie JoossensPeter Vandamme

A1 Journal Article in JOURNAL OF APPLIED MICROBIOLOGY

Bridging preclinical and clinical gut microbiota research using the ex vivo SIFR® technology

Pieter Van den AbbeeleStef DeyaertClémentine ThabuisCaroline PerreauDanica BajicEva WintergerstMarie JoossensJenni FirrmanDana WalshAurélien Baudot

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Convivina is a specialised core gut symbiont of the invasive hornet Vespa velutina

Gowri Amanda HettiarachchiMargo CnockaertMarie JoossensDavid LaureysJessika De ClippeleerNicolas J. VereeckenDenis MichezGuy SmaggheDirk de GraafPeter Vandamme

A1 Journal Article in INSECT MOLECULAR BIOLOGY

DNA extraction protocol impacts ocular surface microbiome profile

Heleen DelbekeIngele CasteelsMarie Joossens

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Microbiota and pathogens in an invasive bee : Megachile sculpturalis from native and invaded regions

Tina TuerlingsGowri Amanda HettiarachchiMarie JoossensBenoit GeslinNicolas J. J. VereeckenDenis MichezGuy SmagghePeter Vandamme

A1 Journal Article in INSECT MOLECULAR BIOLOGY

Oral microbiota in autistic children : diagnosis-related differences and associations with clinical characteristics

Margaux EvenepoelNicky DanielsMatthijs MoerkerkeMichiel Van de VlietJellina PrinsenJean SteyaertBart BoetsKaat AlaertsMarie Joossens

The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Gowri Amanda HettiarachchiMargo CnockaertMarie JoossensAntoine GekiereIvan MeeusNicolas J. VereeckenDenis MichezGuy SmagghePeter Vandamme

A1 Journal Article in MICROBIAL ECOLOGY

Thermotolerant Campylobacter species from animals and diarrhoeic children in Ethiopia

Wondemagegn Mulu LingerewMarie JoossensMulugeta KibretKurt Houf

2022

Campylobacter species occurrences in Ethiopian animals and diseased children : a one-health approach

Wondemagegn Mulu LingerewMarie JoossensMulugeta KibretKurt Houf

Concerning the paper 'Ocular surface microbiome in health and disease'

Heleen DelbekeIngele CasteelsMarie Joossens

A1 Journal Article in ASIA-PACIFIC JOURNAL OF OPHTHALMOLOGY

Executioner caspases 3 and 7 are dispensable for intestinal epithelium turnover and homeostasis at steady state

Farzaneh GhazaviJelle HuysentruytJordy De ConinckStephanie KourulaSofie MartensBehrouz HassanniaTim WartewigTatyana DivertRia RoelandtBastian Popper et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In search of viable SARS-CoV-2 in the tear film : a prospective clinical study in hospitalized symptomatic patients

L. LeysenH. DelbekeS. DesmetP.-P. SchauwvlieghePiet MaesG. BlanckaertE. MatthysMarie JoossensI. Casteels

A1 Journal Article in CLINICAL MICROBIOLOGY AND INFECTION

Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients

Frits van CharanteAnneleen WiemePetra RigoleEvelien De CanckLisa OstynLucia GrassiDieter DeforceAurélie CrabbéPeter VandammeMarie Joossens et al.

A2 Journal Article in BIOFILM

The effect of topical anesthetics on 16S ribosomal ribonucleic acid amplicon sequencing results in ocular surface microbiome research

Heleen DelbekeIngele CasteelsMarie Joossens

A1 Journal Article in TRANSLATIONAL VISION SCIENCE & TECHNOLOGY

The resemblance between bacterial gut colonization in pigs and humans

Michiel Van de VlietMarie Joossens

A1 Journal Article in MICROORGANISMS

2021

Bacterial shifts on broiler carcasses at retail upon frozen storage

Zhongjia YuMarie JoossensPieter-Jan KerkhofKurt Houf

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Current knowledge on the human eye microbiome : a systematic review of available amplicon and metagenomic sequencing data

Heleen DelbekeSaif YounasIngele CasteelsMarie Joossens

A1 Journal Article in ACTA OPHTHALMOLOGICA

Evaluation of microbial contamination of different pork carcass areas through culture-dependent and independent methods in small-scale slaughterhouses

Maria Francesca PeruzyKurt HoufMarie JoossensZhongjia YuYolande Therese Rose ProrogaNicoletta Murru

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Fecal microbiota transplantation reduces symptoms in some patients with irritable bowel syndrome with predominant abdominal bloating : short- and long-term results from a placebo-controlled randomized trial

Tom HolvoetMarie JoossensJorge F. Vazquez-CastellanosEvelien ChristiaensLander HeyerickJerina BoelensBruno VerhasseltHans Van VlierbergheMartine De VosJeroen Raes et al.

A1 Journal Article in GASTROENTEROLOGY

Gut microbiome profiling uncovers a lower abundance of Butyricicoccus in advanced stages of chronic kidney disease

Tessa GrypKaroline FaustWim Van BiesenGeert R. B. HuysFrancis VerbekeMarijn SpeeckaertJeroen RaesMario VaneechoutteMarie JoossensGriet Glorieux

A1 Journal Article in JOURNAL OF PERSONALIZED MEDICINE

Isolation, characterization and antibiotic resistance of Proteus mirabilis from Belgian broiler carcasses at retail and human stool

Zhongjia YuMarie JoossensAnne-Marie Van Den AbeelePieter-Jan KerkhofKurt Houf

A1 Journal Article in FOOD MICROBIOLOGY

Large-scale association analyses identify host factors influencing human gut microbiome composition

Alexander KurilshikovCarolina Medina-GomezRodrigo BacigalupeDjawad RadjabzadehJun WangAyse DemirkanCaroline I. Le RoyJuan Antonio Raygoza GarayCasey T. FinnicumXingrong Liu et al.

A1 Journal Article in NATURE GENETICS

Oral cavity as gateway to lungs and gut : latest insights about the impact of oral microbiota on systemic diseases

A2 Journal Article in MICROBIOTA IN HEALTH AND DISEASE

The bacterial diversity of raw Moroccon camel milk

Zaina KadriFreek SpitaelsMargo CnockaertMohamed AmarMarie JoossensPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Treponema peruense sp. nov., a commensal spirochaete isolated from human faeces

Claire BelkhouRaul Tito TadeoRodrigo BacigalupeMireia Valles-ColomerSamuel ChaffronMarie JoossensAlexandra ObregonLuis Marín ReyesOmar TrujilloGeert R. B. Huys et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2020

Analyses of the bacterial contamination on Belgian broiler carcasses at retail level

Zhongjia YuMarie JoossensKurt Houf

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Assessment of the bacterial contamination on broiler carcasses at retail

Zhongjia YuKurt HoufMarie Joossens

Comparison of five assays for DNA extraction from bacterial cells in human faecal samples

Tessa GrypGriet GlorieuxMarie JoossensMario Vaneechoutte

A1 Journal Article in JOURNAL OF APPLIED MICROBIOLOGY

Effects of low and high FODMAP diets on human gastrointestinal microbiota composition in adults with intestinal diseases : a systematic review

Doris VandeputteMarie Joossens

A1 Journal Article in MICROORGANISMS

Genome-wide associations of human gut microbiome variation and implications for causal inference analyses

David A. HughesRodrigo BacigalupeJun WangMalte C. RuehlemannRaul Y. TitoGwen FalonyMarie JoossensSara Vieira-SilvaLiesbet HenckaertsLeen Rymenans et al.

A1 Journal Article in NATURE MICROBIOLOGY

Gut microbiome variation is associated to Multiple Sclerosis phenotypic subtypes

Tatjana ReyndersLindsay DevolderMireia Valles-ColomerAnn Van RemoortelMarie JoossensJacques De KeyserGuy NagelsMarie D'hoogheJeroen Raes

A1 Journal Article in ANNALS OF CLINICAL AND TRANSLATIONAL NEUROLOGY

Influences of ingredients and bakers on the bacteria and fungi in sourdough starters and bread

Aspen T. ReeseAnne A. MaddenMarie JoossensGuylaine LacazeRobert R. Dunn

A1 Journal Article in MSPHERE

Isolation and quantification of uremic toxin precursor-generating gut bacteria in chronic kidney disease patients

Tessa GrypGeert R. B. HuysMarie JoossensWim Van BiesenGriet GlorieuxMario Vaneechoutte

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Microbiota - obesity : associations from mouth to gut across all ages

Marie JoossensD. VandeputteNathalie Michels

A2 Journal Article in MICROBIOTA IN HEALTH AND DISEASE

The gut-kidney axis : colon-derived protein-bound uremic toxins in chronic kidney disease

Tessa GrypGriet GlorieuxMario VaneechoutteMarie Joossens

Unlocking the full potential of probiotics : refocusing on microbial demands

Editorial material

2019

Assessment of food microbiological indicators applied on poultry carcasses by culture combined MALDI-TOF MS identification and 16S rRNA amplicon sequencing

Zhongjia YuMaria Francesca PeruzyCharles DumolinMarie JoossensKurt Houf

A1 Journal Article in FOOD MICROBIOLOGY

Assessment of microbial communities on freshly killed wild boar meat by MALDI-TOF MS and 16S rRNA amplicon sequencing

Maria Francesca PeruzyN MurruZhongjia YuPieter-Jan KerkhofB NeolaMarie JoossensYTR ProrogaKurt Houf

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Concentrations of p-cresyl - and indoxyl sulfate and their precursors in different stages of chronic kidney disease : from feces to urine

Tessa GrypKim De PaepeFrederiek-Maarten KerckhofWim Van BiesenRaymond VanholderMarie JoossensMario VaneechoutteGriet Glorieux

Determination of the microbiological contamination in minced pork by culture dependent and 16S amplicon sequencing analysis

Maria Francesca PeruzyN. MurruZhongjia YuMargo CnockaertMarie JoossensY. T. R. ProrogaKurt Houf

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Gut microbiota dynamics and uraemic toxins : one size does not fit all

Marie JoossensKaroline FaustTessa GrypAnh Thi Loan NguyenJun WangSunny ElootEva SchepersAnnemieke DhondtAnneleen PletinckSara Vieira-Silva et al.

A1 Journal Article in GUT

Lactococci dominate the bacterial communities of fermented maize, sorghum and millet slurries in Zimbabwe

Molly GabazaMarie JoossensMargo CnockaertMaud MuchuwetiKatleen RaesPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota

Raul Y TitoSamuel ChaffronClara CaenepeelGipsi Lima-MendezJun WangSara Vieira-SilvaGwen FalonyFalk HildebrandYoussef DarziLeen Rymenans et al.

A1 Journal Article in GUT

The neuroactive potential of the human gut microbiota in quality of life and depression

Mireia Valles-ColomerGwen FalonyYoussef DarziEttje F TigchelaarJun WangRaul Y TitoCarmen SchiweckAlexander KurilshikovMarie JoossensCisca Wijmenga et al.

A1 Journal Article in NATURE MICROBIOLOGY

2018

Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC

Nadia Conceicao-NetoWard DeboutteTim DierckxKathleen MachielsJun WangKwe Claude YindaPiet MaesMarc Van RanstMarie JoossensJeroen Raes et al.

A1 Journal Article in GUT

2017

Assessment of faecal microbial transfer in irritable bowel syndrome with severe bloating

Tom HolvoetMarie JoossensJun WangJerina BoelensBruno VerhasseltDebby LaukensHans Van VlierberghePieter HindryckxMartine De VosDanny De Looze et al.

A1 Journal Article in GUT

Low viral richness at baseline in ulcerative ulcerative colitis associated with faecal microbiota transplantation success

N Conceicao-NetoW DeboutteT DierckxK MachielsJ WangC YindaP MaesM Van RanstMarie JoossensJ Raes et al.

Specific members of the predominant gut microbiota predict pouchitis following colectomy and IPAA in UC

Kathleen MachielsJoão SabinoLeen VandermostenMarie JoossensIngrid ArijsMagali de BruynVenessa EeckhautGert Van AsscheMarc FerranteJan Verhaegen et al.

A1 Journal Article in GUT

The FIT trial : anti-inflammatory dietary intervention effects on the intestinal microbiota

J SabinoS Vieira-SilvaK MachielsMarie JoossensG FalonyM FerranteG Van AsscheS Van der MerweC MatthysJ Raes et al.

Therapeutic manipulation of the gut microbiota through diet to reduce intestinal inflammation : results from the FIT trial

Joao SabinoSara Vieira-SilvaKathleen MachielsMarie JoossensGwen FalonyMarc FerranteGert A. Van AsscheSchalk Van der MerweChristophe MatthysJeroen Raes et al.

2016

Concordance in anti-OmpC and anti-I2 indicate the influence of genetic predisposition : results of a European study of twins with Crohn's disease

Karin AmcoffMarie JoossensMarie J PierikDaisy JonkersJohan BohrSofie JoossensMarielle Romberg-CampsNils NyhlinAnna WickbomPaul J Rutgeerts et al.

A1 Journal Article in JOURNAL OF CROHNS & COLITIS

Donor species richness determines faecal microbiota transplantation success in inflammatory bowel disease

Severine VermeireMarie JoossensKristin VerbekeJun WangKathleen MachielsJoao SabinoMarc FerranteGert Van AsschePaul RutgeertsJeroen Raes

A1 Journal Article in JOURNAL OF CROHNS & COLITIS

Genetic risk for Crohn's disease has little effect on intestinal microbiota composition

J SabinoS Vieira-SilvaI CleynenK NysK MachielsMarie JoossensG FalonyJ WangV BalletM Ferrante et al.

Genetic risk for Crohn's disease has little impact on intestinal microbiota composition

Joao SabinoSara Vieira-SilvaIsabelle CleynenKris NysKathleen MachielsMarie JoossensGwen FalonyJun WangVera BalletMarc Ferrante et al.

Host-microbiome interactions in primary sclerosing cholangitis

J SabinoS Vieira-SilvaI CleynenK MachielsMarie JoossensG FalonyJ WangV BalletM FerranteG Van Assche et al.

Host-microbiome interactions in primary sclerosing cholangitis

Joao SabinoSara Vieira-SilvaIsabelle CleynenKathleen MachielsMarie JoossensGwen FalonyJun WangVera BalletMarc FerranteGert Van Assche et al.

Meta-omics in inflammatory bowel disease research : applications, challenges, and guidelines

Mireia Valles-ColomerYoussef DarziSara Vieira-SilvaGwen FalonyJeroen RaesMarie Joossens

A1 Journal Article in JOURNAL OF CROHNS & COLITIS

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

Alexandra ZhernakovaAlexander KurilshikovMarc Jan BonderEttje F TigchelaarMelanie SchirmerTommi VatanenZlatan MujagicArnau Vich VilaGwen FalonySara Vieira-Silva et al.

A1 Journal Article in SCIENCE

Population-level analysis of gut microbiome variation

Gwen FalonyMarie JoossensSara Vieira-SilvaJun WangYoussef DarziKaroline FaustAlexander KurilshikovMarc Jan BonderMireia Valles-ColomerDoris Vandeputte et al.

A1 Journal Article in SCIENCE

Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD

Joao SabinoSara Vieira-SilvaKathleen MachielsMarie JoossensGwen FalonyVera BalletMarc FerranteGert Van AsscheSchalk Van der MerweSeverine Vermeire et al.

A1 Journal Article in GUT

Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates

Doris VandeputteGwen FalonySara Vieira-SilvaRaul Y TitoMarie JoossensJeroen Raes

A1 Journal Article in GUT

2015

Faecal metabolite profiling identifies medium-chain fatty acids as discriminating compounds in IBD

Vicky De PreterKathleen MachielsMarie JoossensIngrid ArijsChristophe MatthysSeverine VermeirePaul RutgeertsKristin Verbeke

A1 Journal Article in GUT

Fecal microbiota transplantation in irritable bowel syndrome with bloating : results from a prospective pilot study

Tom HolvoetJerina BoelensMarie JoossensJeroen RaesMartine De VosDanny De Looze

Intestinal dysbiosis in patients with primary sclerosing cholangitis

Joao SabinoSara Vieira-SilvaKathleen MachielsMarie JoossensGwen FalonyVera BalletMarc FerranteGert A. Van AsscheSchalk Van der MerweJeroen Raes et al.

Intestinal microbial signature in patients with primary sclerosing cholangitis

J SabinoS Vieira-SilvaK MachielsMarie JoossensG FalonyV BalletM FerranteG Van AsscheS Van der MerweJ Raes et al.

Intestinal microbial signature predicts postoperative Crohn's disease recurrence following ileocaecal resection with ileocolonic anastomosis

K MachielsW VanhoveJ SabinoMarie JoossensI ArijsI TerrassonV BalletG Van AsscheJ VerhaegenA Wolthuis et al.

Predominant intestinal microbiota predicts postoperative Crohn's disease recurrence following ileocaecal resection with ileocolonic anastomosis

Kathleen MachielsWiebe VanhoveJoao SabinoMarie JoossensIngrid ArijsIsabelle TerrassonVera BalletGert A Van AsscheJan VerhaegenAlbert M Wolthuis et al.

2014

A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis

Kathleen MachielsMarie JoossensJoão SabinoVicky De PreterIngrid ArijsVenessa EeckhautVera BalletKaroline ClaesFilip Van ImmerseelKristin Verbeke et al.

A1 Journal Article in GUT

Predominant gut microbiota predict pouchitis following colectomy and IPAA in ulcerative colitis

Kathleen MachielsMarie JoossensIngrid ArijsIsabelle TerrassonVera BalletMarc FerranteJan VerhaegenKristel Van SteenAnthony de Buck van OverstraetenAlbert M Wolthuis et al.

2013

A metagenomic insight into our gut's microbiome

Patricia LepageMarion C LeclercMarie JoossensStanislas MondotHerve M BlottiereJeroen RaesDusko EhrlichJoel Dore

A1 Journal Article in GUT

Metabolic profiling of the impact of oligofructose-enriched inulin in Crohn's disease patients : a double-blinded randomized controlled trial

Vicky De PreterMarie JoossensVera BalletZiv ShkedyPaul RutgeertsSeverine VermeireKristin Verbeke

A1 Journal Article in CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY

2012

Assessment of the microbiota in microdissected tissues of Crohn's disease patients

Gert De HertoghBart LemmensPeter VerhasseltRonald de HoogtXavier SagaertMarie JoossensGert Van AsschePaul RutgeertsSeverine VermeireJeroen Aerssens

A2 Journal Article in INTERNATIONAL JOURNAL OF INFLAMMATION

Bacterial dysbiosis in ulcerative colitis patients differs from Crohn's disease patients

Kathleen MachielsMarie JoossensJoao SabinoVicky De PreterIngrid ArijsVera BalletKarolien ClaesJan VerhaegenGert Van AsschePaul J. Rutgeerts et al.

Effect of oligofructose-enriched inulin (OF-IN) on bacterial composition and disease activity of patients with Crohn's disease : results from a double-blinded randomised controlled trial

Marie JoossensVicky De PreterVera BalletKristin VerbekePaul RutgeertsSeverine Vermeire

A1 Journal Article in GUT

Influence of genetics in the expression of serological markers in twins with IBD

Karin AmcoffMarie JoossensMarie J PierikDaisy JonkersJohan BohrSofie JoossensMarielle Romberg-CampsNils NyhlinAnna K WickbomPaul J Rutgeerts et al.

Pilot study on the safety and efficacy of faecal microbiota transplantation in refractory Crohn's disease

Severine VermeireMarie JoossensKristin VerbekeFalk HildebrandKathleen MachielsKarolien Van den BroeckGert Van AsschePaul J. RutgeertsJeroen Raes

2011

Association of Faecalibacterium prausnitzii and disease activity in ulcerative colitis

Kathleen MachielsMarie JoossensVicky De PreterIngrid ArijsVera BalletSophie OrganeTamara CoopmansGert A Van AsscheJan VerhaegenPaul J Rutgeerts et al.

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

Marie JoossensGeert HuysMargo CnockaertVicky De PreterKristin VerbekePaul RutgeertsPeter VandammeSeverine Vermeire

A1 Journal Article in GUT

Effect of oligofructose enriched inulin (OF-IN) on bacterial composition and disease activity of Crohn's disease patients : results from a double-blind randomized controlled trial

Marie JoossensVicky De PreterVera BalletKristin VerbekeKathleen MachielsPaul J. RutgeertsSeverine Vermeire

High-throughput method for comparative analysis of denaturing gradient gel electrophoresis profiles from human fecal samples reveals significant increases in two bifidobacterial species after inulin-type prebiotic intake

Marie JoossensGeert HuysKristel Van SteenMargo CnockaertSeverine VermeirePaul RutgeertsKristin VerbekePeter VandammeVicky De Preter

A1 Journal Article in FEMS MICROBIOLOGY ECOLOGY

2010

Familial aggregation and antimicrobial response dose-dependently affect the risk for Crohn's disease

Marie JoossensKristel Van SteenJulien BrancheBoualem SendidPaul RutgeertsFrancis VasseurDaniel PoulainFranck BrolyJean-Frederic ColombelSeverine Vermeire et al.

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

2009

Candida albicans colonization and ASCA in familial Crohn's disease

Annie Standaert-VitseBoualem SendidMarie JoossensNadine FrancoisPeggy Vandewalle-El KhouryJulien BrancheHerbert Van KruiningenThierry JouaultPaul RutgeertsCorinne Gower-Rousseau et al.

A1 Journal Article in AMERICAN JOURNAL OF GASTROENTEROLOGY

Clustering of (auto)immune diseases with early-onset and complicated inflammatory bowel disease

Mirjam Bueno de MesquitaMarc FerranteLiesbet HenckaertsMarie JoossensVirginie JanssensTibor HlavatyMarie PierikSofie JoossensNele Van SchuerbeekGert Van Assche et al.

A1 Journal Article in EUROPEAN JOURNAL OF PEDIATRICS

Seroreactivity to faecalibacterium prausnitzii and the presence of this microorganism in feces of Crohn's disease patients and controls

Nathalie VermeulenMarie JoossensSeverine VermeirePaul J. RutgeertsXavier Bossuyt

2008

Analysis of genetic variants in non-TPMT genes to explain bone marrow toxicity during azathioprine therapy in inflammatory bowel disease

Konstantinos KatsanosMarc FerranteLiesbet HenckaertsMarie JoossensIngrid ArijsFabian SchnitzlerHerma FidderGert A. Van AsscheAfroditi KatsarakiDimitrios K. Christodoulou et al.

Genetic markers and the risk of complicated disease behaviour in Crohn's disease patients

L HenckaertsI CleynenMarie JoossensKristel Van SteenK ClaesP RutgeertsS Vermeire

Genetic variations in GLI-1 and MDR-1 do not predict disease progression in patients with ulcerative colitis

Marc FerranteTamara CoopmansIsabelle CleynenNathalie VermeulenMarie JoossensIngrid ArijsGert A. Van AsschePaul RurgeertsSeverine Vermeire

Infliximab does not increase short-term post-operative infectious complications in patients with ulcerative colitis

Marc FerranteSeverine VermeireSarah DeclerckAndre D'HooreGert A. Van AsscheIlse HoffmanIsabelle CleynenIngrid ArijsMarie JoossensNathalie Vermeulen et al.

Microarray study of mucosal antimicrobial peptides in patients with inflammatory bowel disease before and after first infliximab treatment

I ArijsL Van LommelKristel Van SteenG De HertoghR QuintensK LemaireMarie JoossensFC SchuitK GeboesGA Van Assche et al.

Mucosal gene signatures to predict response to infliximab in patients with inflammatory bowel disease

I ArijsL Van LommelKristel Van SteenG De HertoghM FerranteMarie JoossensK GeboesGA Van AsscheS VermeireFC Schuit et al.

Protein microarray experiments for profiling of the autoimmune response in inflammatory bowel disease; identification of PHLA1

Nathalie VermeulenSeverine VermeireGeorges MichielsMarie JoossensPaul J. RutgeertsXavier Bosuyt

Stability of gut microbiota over time in Crohn’s disease patients compared to healthy relatives

Marie JoossensVicky De PreterKristel Van SteenNathalie VermeulenGeert HuysKristin VerbekePeter VandammePaul RutgeertsSeverine Vermeire

2007

Candida albicans carriage and ASCA in familial Crohn's disease

Annie Standaert-VitseMathias ChamaillardMarie JoossensNadine FrancoisPeggy VandewalleJulien BrancheHerbert J. Van KruiningenChristian LibersaCorinne Gower-RousseauAntoine Cortot et al.

Cluster of Crohn's disease in Herny, France, including 2 cases from a common residence

Herbert J. Van KruiningenMarie JoossensJean-Frederic Colombel

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

Contribution of genetic and environmental factors in the pathogenesis of Crohn's disease in a large family with multiple cases

Marie JoossensMarc SimoensSeverine VermeireXavier BossuytKarel GeboesPaul Rutgeerts

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

Familial Crohn's disease in Belgium : pedigrees, temporal relationships among cases, and family histories

Herbert J. Van KruiningenMarie JoossensSeverine VermeireSofie JoossensStephane DebeugnyCorinne Gower-RousseauAntoine CortotJean-Frederic ColombelPaul RutgeertsRobert Vlietinck

A1 Journal Article in JOURNAL OF CLINICAL GASTROENTEROLOGY

Mixed IBD families : a distinct entity within IBD

M PierikKristel Van SteenMarie JoossensPJ RutgeertsS Vermeire

Mutations in pattern recognition receptor genes modulate seroreactivity to microbial antigens in patients with inflammatory bowel disease

Liesbet HenckaertsMarie PierikMarie JoossensMarc FerrantePaul RutgeertsSeverine Vermeire

A1 Journal Article in GUT

New serological markers in inflammatory bowel disease are associated with complicated disease behaviour

M FerranteL HenckaertsMarie JoossensM PierikS JoossensN DotanGL NormanRT AltstockKristel Van SteenP Rutgeerts et al.

A1 Journal Article in GUT

The Crohn's disease associated NOD2 mutations predispose to dysbiosis

Christel NeutAdeline SivignonMarie JoossensAnnie Standaert-VitseJulien BrancheHerbert J. Van KrumingenChristian LibersaAntoine CortotCormne Gower-RousseauFranck Broly et al.

2006

A panel of anti-glycan antibodies (gASCA, ALCA, ACCA and AMCA) in the diagnosis and differential diagnosis of IBD

Marc FerranteMarie PierikLiesbet HenckaertsNir DotanRom T. AltstockIris DotanMarie JoossensSofie JoossensKonstantinos KatsanosKarolien Claes et al.

Familial distribution of serological and genetic markers in Crohn's disease patients and their healthy relatives

Marie JoossensJulien BrancheBoualem SendidDelphine AllorgeSofie JoossensNele van SchuerbeekKarolien ClaesPaul RutgeertsPeggy VandewalleAnnie Standaert-Vitse et al.

High incidence of IBD in multiple affected families : results from a prospective study and association with known environmental and genetic risk factors

Marie JoossensJulien BrancheDelphine AllorgeBoualem SendidHerbert J. van KruiningenSofie JoossensKarolien ClaesNele van SchuerbeekPaul RutgeertsPeggy Vandewalle et al.

Mixed IBD families : a distinct entity within IBD

Marie PierikMarie JoossensLiesbet HenckaertsSofie JoossensKarolien ClaesPaul RutgeertsSeverine Vermeire

Single nucleotide polymorphisms of the MDR1 gene in inflammatory bowel disease

Konstantinos KatsanosMarc FerranteKarolien ClaesNele Van SchuerbeekMarie PierikLiesbet HerickaertsMarie JoossensSofie JoossensGeri van AsscheEpameinondas V. Tsianos et al.

The MDR1 G2677T polymorphism is associated with gastrointestinal intolerance to azathioprine

Konstantinos KatsanosMarc FerranteMarie JoossensSofie JoossensLiesbet HenckaertsMarie PierikKarolien ClaesNele van SchuerbeekAfroditi KatsarakiGen van Assche et al.

The role of vascular endothelial growth factor (VEGF) in inflammatory bowel disease

Marc FerranteMarie PierikLiesbet HenckaertsMarie JoossensKarolien ClaesNele Van SchuerbeekRobert VlietinckPaul RutgeertsGert Van AsscheSeverine Vermeire

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

The single nucleotide polymorphism C3435T in the MDR1 gene predicts the efficacy of steroid tapering in inflammatory bowel disease

Konstantinos KatsanosMarc FerranteLiesbet HenckaertsMarie PierikKarolien ClaesNele van SchuerbeekMarie JoossensSofie JoossensGeri van AsscheEpameinondas V. Tsianos et al.

2005

A stop codon mutation in the TUCAN (CARD8,cardinal) gene is associated with less favorable outcome to infliximab treatment in Crohns disease (CD)

M PierikT HlavatyMarie JoossensL HenckaertsM FerranteM NomanG Van AsscheS VermeireP Rutgeerts

Crohn's disease and month of birth

M Van RanstMarie JoossensS JoossensKristel Van SteenM PierikS VermeireP Rutgeerts

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

Environmental factors in familial Crohn's disease in Belgium

HJ Van KruiningenMarie JoossensS VermeireS JoossensS DebeugnyC Gower-RousseauA CortotJF ColombelP RutgeertsR Vlietinck

A1 Journal Article in INFLAMMATORY BOWEL DISEASES

IBDQ score is a sensitive instrument to assess short-term changes in disease related quality of life in patients with luminal Crohn's disease

T HlavatyP PersoonsS VermeireM FerranteM PierikL HenckaertsMarie JoossensG Van AsscheP Rutgeerts

Pharmacogenetic analysis of OCTN and DLG5 polymorphisms shows further evidence for association of the OCTN TC risk haplotype with lower response to infliximab in Crohn's disease

L HenckaertsT HlavatyM FerranteM PienkMarie JoossensP RutgeertsS Vermeire

Study on CARD15 and TLR4 polymorphisms in children with early diagnosed IBD and their family members

MB de MesquitaL HenckaertsMarie JoossensV JanssensT HlavatyM FerranteM PierikS JoossensN Van SchuerbeekG Van Assche et al.