Research Explorer

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Researcher

Margo Cnockaert

Publications & Research Data

Awards & Distinctions

108 Results

2025

Bridging the diversity between 16S rRNA amplicon sequencing and cultivation studies

Michiel Van de VlietCharlotte PeetersMargo CnockaertLisa JoosMarie JoossensPeter Vandamme

Carnimonas bestiolae sp. nov. and Cernens ardua gen. nov., sp. nov. : new halotolerant bacteria from the invasive solitary bee Megachile sculpturalis

Juliana Botero CardonaMargo CnockaertYakun ZhangCharlotte PeetersPeter Vandamme

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Harnessing machine learning to predict antibiotic susceptibility in Pseudomonas aeruginosa biofilms

Fauve VergauweGaetan De WaeleAndrea SassCallum HighmoreNiall HanrahanYoshiki CookMads LichtenbergMargo CnockaertPeter VandammeSumeet Mahajan et al.

A1 Journal Article in NPJ BIOFILMS AND MICROBIOMES

Identification and functional genomic analyses of Bartonella isolates from honey bees, and reassessment of the taxonomy of the genus Bartonella

Juliana Botero CardonaNikolas BaslerMargo CnockaertCharlotte PeetersMaria SchreiberManja MarzDirk de GraafJelle MatthijnssensPeter Vandamme

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

2024

Microbial ecology and metabolite dynamics of backslopped triticale sourdough productions and the impact of scale

Victor Gonzalez-AlonsoInes PradalYohanes Raditya WardhanaMargo CnockaertAnneleen WiemePeter VandammeLuc De Vuyst

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Proposal of Helicobacter higonensis sp. nov. isolated from a human clinical specimen, and emended description of Helicobacter valdiviensis Collado, 2014

Junko TomidaTohru Miyoshi-AkiyamaRyo KutsunaHiroyasu TsutsukiTomohiro SawaMargo CnockaertPeter VandammeYoshiaki Kawamura

A1 Journal Article in MICROBIOLOGY AND IMMUNOLOGY

Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam

Aurélien CarlierMarine BeaumelSandra MoreauTessa AcarThibault Géry SanaMargo CnockaertPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Refermentation and maturation of lambic beer in bottles: a necessary step for gueuze production

Dries BongaertsArne BouchezJonas De RoosMargo CnockaertAnneleen WiemePeter VandammeStefan WeckxLuc De Vuyst

A1 Journal Article in APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The exploration of dominant spoilage bacteria in blue mussels (Mytilus edulis) stored under different modified atmospheres by MALDI-TOF MS in combination with 16S rRNA sequencing

Susana Endah RatnawatiLotta KuulialaNele VerschuereMargo CnockaertPeter VandammeFrank Devlieghere

A1 Journal Article in FOOD MICROBIOLOGY

Various cold storage-backslopping cycles show the robustness of Limosilactobacillus fermentum IMDO 130101 as starter culture for Type 3 sourdough production

Inés PradalVíctor González-AlonsoYohanes Raditya WardhanaMargo CnockaertAnneleen WiemePeter VandammeLuc De Vuyst

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Volatile organic compounds associated with spoilage bacteria isolated from blue mussels (Mytilus edulis) packed under modified atmospheres

Susana Endah RatnawatiLotta KuulialaMargo CnockaertPeter VandammeChristophe WalgraeveKristof DemeestereFrank Devlieghere

2023

A phylogenomic and comparative genomic analysis of Commensalibacter, a versatile insect symbiont

Juliana Botero CardonaAtena Sadat SombolestaniMargo CnockaertCharlotte PeetersWim BorremansLuc De VuystNicolas J. VereeckenDenis MichezGuy SmaggheGerman Bonilla-Rosso et al.

A2 Journal Article in ANIMAL MICROBIOME

Comparative genomic analysis of Periweissella and the characterization of novel motile species

Nanzhen QiaoJulia BechtnerMargo CnockaertEliza DepoorterChristian Diaz-MunozPeter VandammeLuc De VuystMichael G. Gänzle

A1 Journal Article in APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Convivina is a specialised core gut symbiont of the invasive hornet Vespa velutina

Gowri Amanda HettiarachchiMargo CnockaertMarie JoossensDavid LaureysJessika De ClippeleerNicolas J. VereeckenDenis MichezGuy SmaggheDirk de GraafPeter Vandamme

A1 Journal Article in INSECT MOLECULAR BIOLOGY

Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria

Peter VandammeCharlotte PeetersGowri Amanda HettiarachchiMargo CnockaertAurélien Carlier

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

New insights into the role of key microorganisms and wooden barrels during lambic beer fermentation and maturation

Louise VermoteJonas De RoosMargo CnockaertPeter VandammeStefan WeckxLuc De Vuyst

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Phylogenomics reveals insights into the functional evolution of the genus Agrobacterium and enables the description of Agrobacterium divergens sp. nov

Henry David Naranjo BenavidesLiesbeth LebbeMargo CnockaertFlorent LassalleChin Chin TooAnne Willems

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms

Gowri Amanda HettiarachchiMargo CnockaertMarie JoossensAntoine GekiereIvan MeeusNicolas J. VereeckenDenis MichezGuy SmagghePeter Vandamme

A1 Journal Article in MICROBIAL ECOLOGY

2022

Description of Pseudoclavibacter triregionum sp. nov. from human blood and Pseudoclavibacter albus comb. nov., and revised classification of the genus Pseudoclavibacter : proposal of Caespitibacter gen. nov., with Caespitibacter soli comb. nov. and Caespitibacter caeni comb. nov

Peter VandammeCharlotte PeetersHelena M. B. Seth-SmithHanna SchmidMargo CnockaertAdrian EgliDaniel Goldenberger

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Paraburkholderia gardini sp. nov. and Paraburkholderia saeva sp. nov. : novel aromatic compound degrading bacteria isolated from garden and forest soil samples

Sarah VanwijnsbergheCharlotte PeetersMargo CnockaertEvelien De CanckPeter Vandamme

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

The exploration of microbial profiles in blue mussels (Mytilus edulis) stored under different modified atmospheres

Susana Endah RatnawatiLotta KuulialaNele VerschuerePeter RagaertMargo CnockaertPeter VandammeFrank Devlieghere

2021

Burkholderia perseverans sp. nov., a bacterium isolated from the Restinga ecosystem, is a producer of volatile and diffusible compounds that inhibit plant pathogens

Jackeline Pereira AndradeHarisson Guimarães de SouzaLarissa Carvalho FerreiraMargo CnockaertEvelien De CanckAnneleen WiemeCharlotte PeetersEduardo GrossJorge Teodoro De SouzaPhellippe Arthur Santos Marbach et al.

A1 Journal Article in BRAZILIAN JOURNAL OF MICROBIOLOGY

Characterization of novel Gluconobacter species from fruits and fermented food products : Gluconobacter cadivus sp. nov., Gluconobacter vitians sp. nov. and Gluconobacter potus sp. nov

Atena Sadat SombolestaniIlse CleenwerckMargo CnockaertWim BorremansAnneleen WiemeLuc De VuystPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gluconacetobacter dulcium sp. nov., a novel Gluconacetobacter species from sugar-rich environments

Atena Sadat SombolestaniIlse CleenwerckMargo CnockaertWim BorremansAnneleen WiemeYvan MoutiaStijn SpaepenLuc De VuystPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gulosibacter hominis sp. nov. : a novel human microbiome bacterium that may cause opportunistic infections

Peter VandammeCharlotte PeetersHelena M. B. Seth-SmithLukas GrafMargo CnockaertAdrian EgliDaniel Goldenberger

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria

Shanshan QiAlexander BogdanovMargo CnockaertTessa AcarSarah Ranty-RobyTom CoenyePeter VandammeGabriele M. KönigMax CrüsemannAurélien Carlier

A1 Journal Article in ENVIRONMENTAL MICROBIOLOGY

Optimization of culture conditions for gamma-aminobutyric acid production by newly identified Pediococcus pentosaceus MN12 isolated from 'mam nem', a fermented fish sauce

Thuy DTBA NguyenKS KhooKW ChewMargo CnockaertPeter VandammeYC HoND HuyHH CocoletziPL Show

A1 Journal Article in BIOENGINEERED

Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere

Shanshan QiMargo CnockaertAurélien CarlierPeter Vandamme

A1 Journal Article in International Journal of Systematic and Evolutionary Microbiology

Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana

Shanshan QiMargo CnockaertAurélien CarlierPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Roseomonas hellenica sp. nov., isolated from roots of wild-growing Alkanna tinctoria

Angélique RatHenry David Naranjo BenavidesLiesbeth LebbeMargo CnockaertNikos KrigasKaterina GrigoriadouEleni MaloupaAnne Willems

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

The bacterial diversity of raw Moroccon camel milk

Zaina KadriFreek SpitaelsMargo CnockaertMohamed AmarMarie JoossensPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

2020

Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production

Charles DumolinCharlotte PeetersElham EhsaniGuillaume TahonEvelien De CanckMargo CnockaertNico BoonPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Burkholderia cepacia complex taxon K : where to split?

Eliza DepoorterEvelien De CanckCharlotte PeetersAnneleen WiemeMargo CnockaertJames E. A. ZlosnikJohn J. LiPumaTom CoenyePeter Vandamme

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Decoding the capability of Lactobacillus plantarum W1 isolated from soybean whey in producing an exopolysaccharide

Thi Bich Thuy DoBao Khanh TranThi Van Thi TranTrung Hieu LeMargo CnockaertPeter VandammeThi Hong Chuong NguyenChinh Chien NguyenSung Hyun HongSoo Young Kim et al.

A1 Journal Article in ACS OMEGA

Novel acetic acid bacteria from cider fermentations : acetobacter conturbans sp. nov. and acetobacter fallax sp. nov

Atena Sadat SombolestaniIlse CleenwerckMargo CnockaertWim BorremansAnneleen WiemeLuc De VuystPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2019

Comparative genomics of Pandoraea, a genus enriched in xenobiotic biodegradation and metabolism

Charlotte PeetersEvelien De CanckMargo CnockaertEvie De BrandtCindy SnauwaertBart VerheydeEliza DepoorterTheodore SpilkerJohn J LiPumaPeter Vandamme

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Determination of the microbiological contamination in minced pork by culture dependent and 16S amplicon sequencing analysis

Maria Francesca PeruzyN. MurruZhongjia YuMargo CnockaertMarie JoossensY. T. R. ProrogaKurt Houf

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data

Charles DumolinMaarten AertsBart VerheydeSimon SchellaertTim VandammeFelix Van der JeugtEvelien De CanckMargo CnockaertAnneleen WiemeIlse Cleenwerck et al.

A1 Journal Article in MSYSTEMS

Lactococci dominate the bacterial communities of fermented maize, sorghum and millet slurries in Zimbabwe

Molly GabazaMarie JoossensMargo CnockaertMaud MuchuwetiKatleen RaesPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Tracking the sources of psychrotrophic bacteria contaminating chicken cuts during processing

Simbarashe SamapundoIlse de BaenstM. AertsMargo CnockaertFrank DevliegherePeter Vandamme

A1 Journal Article in FOOD MICROBIOLOGY

2018

Antimicrobial activity against Mycobacterium tuberculosis under in vitro lipid-rich dormancy conditions

Diana Aguilar-AyalaMargo CnockaertPeter VandammeJuan Carlos PalominoAnandi MartinJorge Gonzalez-y-Merchand

A1 Journal Article in JOURNAL OF MEDICAL MICROBIOLOGY

Halomonas nigrificans sp. nov., isolated from cheese

Folarin A OguntoyinboMargo CnockaertGyu-Sung ChoJan KabischHorst NeveWilhelm BockelmannMareike WenningCharles MAP FranzPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.

Sofie De MeyerMargo CnockaertLionel MoulinJohn G HowiesonPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2017

Characterization of Mycobacterium chelonae-like strains by comparative genomics

Christiane L NogueiraLuiz GP de AlmeidaMaria C MenendezMaria J GarciaLuciano A DigiampietriErica ChimaraMargo CnockaertJuan Carlos PalominoFrançoise PortaelsAnandi Martin et al.

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs

Chloë De WitteBram FlahouRichard DucatelleAnnemieke SmetE De BruyneMargo CnockaertB TaminiauG DaubePeter VandammeFreddy Haesebrouck

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis

Aurélien CarlierMargo CnockaertLinda FehrPeter VandammeLeo Eberl

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Effect of oral administration of lactic acid bacteria on colony performance and gut microbiota in indoor-reared bumblebees (Bombus terrestris)

Annelies BillietIvan MeeusMargo CnockaertPeter VandammeAnnette Van OystaeyenFelix WäckersGuy Smagghe

A1 Journal Article in APIDOLOGIE

Gilliamella intestini sp. nov., Gilliamella bombicola sp. nov., Gilliamella bombi sp. nov. and Gilliamella mensalis sp. nov. : four novel Gilliamella species isolated from the bumblebee gut

Jessy PraetMargo CnockaertIvan MeeusGuy SmagghePeter Vandamme

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

In vitro activity of bedaquiline against rapidly growing nontuberculous mycobacteria

Diana Aguilar-AyalaMargo CnockaertEmmanuel AndréKoen AndriesJorge A Gonzalez-Y-MerchandPeter VandammeJuan Carlos PalominoAnandi Martin

A1 Journal Article in JOURNAL OF MEDICAL MICROBIOLOGY

Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil

Caroline BournaudLionel MoulinMargo CnockaertSergio de FariaYves PrinDany SeveracPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment

Pavel ŠvecStanislava KrálováHans-Jürgen BusseTanita KleinhagauerRoman PantůčekIvana MašlaňováMargo CnockaertPeter VandammeEva StaňkováTereza Gelbíčová et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2016

Bifidobacterium aquikefiri sp nov., isolated from water kefir

David LaureysMargo CnockaertLuc De VuystPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Combined approach to the identification of clinically infrequent non-tuberculous mycobacteria in Argentina

J MonteserinR PaulB LopezMargo CnockaertE TortoliC MenéndezMJ GarcíaJuan Carlos PalominoPeter VandammeV Ritacco et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE

Corynebacterium lowii sp. nov. and Corynebacterium oculi sp. nov., derived from human clinical disease and an emended description of Corynebacterium mastitidis

Kathryn A BernardAna Luisa PachecoCourtney LoomerTamara BurdzDeborah WiebeChris HuynhBrynn KaplenAdam B OlsonMargo CnockaertHiroshi Eguchi et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Fusobacterium gastrosuis sp. nov. : a major component of the porcine gastric microbiota

Chloë De WitteBram FlahouRichard DucatelleAnnemieke SmetEllen De BruyneMargo CnockaertBernard TaminiauGeorges DaubePeter VandammeFreddy Haesebrouck

Helicobacter apri sp. nov., isolated from wild boars

Renato Giulio ZanoniSilvia PivaDaniela FlorioPatrizia BassiDomenico MionMargo CnockaertAndrea LuchettiPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines

Yoshiaki KawamuraJunko TomidaTohru Miyoshi-AkiyamaTatsuya OkamotoMasashi NaritaKatsuhiko HashimotoMargo CnockaertPeter VandammeYuji MoritaTomohiro Sawa et al.

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011

Peter VandammeCharlotte PeetersMargo CnockaertMargarita GomilaEdward RB MooreTheodore SpilkerJohn J LiPuma

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.

Peter VandammeCharlotte PeetersElisabeth InganäsMargo CnockaertKurt HoufTheodore SpilkerEdward RB MooreJohn J LiPuma

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2015

Antimicrobial susceptibility of rapidly growing mycobacteria using the rapid colorimetric method

IB RamisMargo CnockaertA von GrollCL NogueiraSC LeãoE AndreA SimonJuan Carlos PalominoPEA da SilvaPeter Vandamme et al.

A1 Journal Article in EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Bifidobacterium commune sp. nov. isolated from the bumble bee gut

Jessy PraetIvan MeeusMargo CnockaertMaarten AertsGuy SmagghePeter Vandamme

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov.

Peter VandammeCharlotte PeetersMargo CnockaertElisabeth InganäsEnevold FalsenEdward RB MooreOlga C NunesCélia M ManaiaTheodore SpilkerJohn J LiPuma

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

Pavel ŠvecJitka ČernohlávkováHans-Jürgen BusseHana VojtkováRoman PantůčekMargo CnockaertIvana MašlaňováStanislava KrálováPeter VandammeIvo Sedláček

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Enterococcus bulliens sp. nov., a novel lactic acid bacterium isolated from camel milk

Zaina KadriFreek SpitaelsMargo CnockaertJessy PraetOmar El FarrichaJean SwingsPeter Vandamme

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Evaluation of the speed-oligo Mycobacteria assay for the identification of nontuberculous mycobacteria

Ivy Bastos RamisMargo CnockaertAndrea Von GrollVanessa MathysAnne SimonEnrico TortoliJuan Carlos PalominoPedro Eduardo Almeida da SilvaPeter VandammeEmmanuel Andre et al.

A1 Journal Article in JOURNAL OF MEDICAL MICROBIOLOGY

Mycobacterium saopaulense sp. nov., a rapidly growing mycobacterium closely related to members of the Mycobacterium chelonae-Mycobacterium abscessus group

Christiane Lourenço NogueiraChristopher M WhippsCristianne Kayoko MatsumotoErica ChimaraSara DrozEnrico TortoliDenise de FreitasMargo CnockaertJuan Carlos PalominoAnandi Martin et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Nghiên cú'u quân xã vi khuân trong nem chua bâng phu'o'ng pháp không phu thuôc vào nuôi cáy

Doan Thi Lam NguyenKoenraad Van HoordeMargo CnockaertThanh Bình LêPeter Vandamme

A2 Journal Article in TAP CHI KHOA HOC VA CONG NGHE = JOURNAL OF SCIENCE AND TECHNOLOGY

Novel lactic acid bacteria isolated from the bumble bee gut: Convivina intestini gen. nov., sp. nov., Lactobacillus bombicola sp. nov., and Weissella bombi sp. nov.

Jessy PraetIvan MeeusMargo CnockaertKurt HoufGuy SmagghePeter Vandamme

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Staphylococcus petrasii subsp. pragensis subsp. nov., occurring in human clinical material

Pavel ŠvecAnnelies De BelIvo SedláčekPetr PetrášTereza GelbíčováJitka ČernohlávkováIvana MašlaňováMargo CnockaertIvana VarbanovováFedoua Echahidi et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Streptococcus tangierensis sp. nov. and Streptococcus cameli sp. nov., two novel Streptococcus species isolated from raw camel milk in Morocco

Zaina KadriPeter VandammeMouna OuadghiriMargo CnockaertMaarten AertsEl Mostafa ElfahimeOmar El FarrichaJean SwingsMohamed Amar

A1 Journal Article in ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

2014

Burkholderia cordobensis sp. nov., from agricultural soils

Walter O DraghiCharlotte PeetersMargo CnockaertCindy SnauwaertLuis G WallAngeles ZorreguietaPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Burkholderia dilworthii sp. nov. isolated from Lebeckia ambigua root nodules

Sofie De MeyerMargo CnockaertJulie K ArdleyBen-Erik Van WykPeter VandammeJohn G Howieson

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae

Celine De MaesschalckFilip Van ImmerseelVenessa EeckhautSiegrid De BaereMargo CnockaertSiska CroubelsFreddy HaesebrouckRichard DucatellePeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Streptococcus moroccensis sp. nov. and Streptococcus rifensis sp. nov., isolated from raw camel milk

Zaina KadriMohamed AmarMouna OuadghiriMargo CnockaertMaarten AertsOmar El FarrichaPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil

Ana Paula B MoreiraGwen DuytschaeverLuciane A Chimetto TononGraciela M DiasMilene MesquitaMargo CnockaertRonaldo B FranciniPaul De VosCristiane C ThompsonFabiano L Thompson

A1 Journal Article in CURRENT MICROBIOLOGY

2013

A culture-dependent and -independent approach for the identification of lactic acid bacteria associated with the production of nem chua, a Vietnamese fermented meat product

Doan Nguyen Thi LamKoenraad Van HoordeMargo CnockaertEvie De BrandtKatrien De BruyneBinh Le ThanhPeter Vandamme

A1 Journal Article in FOOD RESEARCH INTERNATIONAL

A description of the lactic acid bacteria microbiota associated with the production of traditional fermented vegetables in Vietnam

Doan Thi Lam NguyenKoenraad Van HoordeMargo CnockaertEvie De BrandtMaarten AertsThanh Le BinhPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples

Peter VandammeEdward RB MooreMargo CnockaertEvie De BrandtLiselott Svensson-StadlerKurt HoufTheodore SpilkerJohn J LiPuma

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Burkholderia rhynchosiae sp. nov. isolated from Rhynchosia ferulifolia root nodules

Sofie De MeyerMargo CnockaertJulie K ArdleyRobert D TrengoveGiovanni GarauJohn G HowiesonPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Burkholderia sprentiae sp. nov. isolated from Lebeckia ambigua root nodules

Sofie De MeyerMargo CnockaertJulie K ArdleyGarth MakerRon YatesJohn G HowiesonPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively

Peter VandammeEdward RB MooreMargo CnockaertCharlotte PeetersLiselott Svensson-StadlerKurt HoufTheodore SpilkerJohn J Lipuma

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Lactobacillus porcinae sp. nov. isolated from traditional Vietnamese nem chua

Doan Thi Lam NguyenMargo CnockaertKoenraad Van HoordeEvie De BrandtIsabel SnauwaertCindy SnauwaertLuc De VuystBinh Le ThanhPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2012

Validation of MALDI-TOF MS for rapid classification and identification of lactic acid bacteria, with a focus on isolates from traditional fermented foods in Northern Vietnam

Doan Thi Lam NguyenKoenraad Van HoordeMargo CnockaertEvie De BrandtMaarten AertsBinh Le ThanhPeter Vandamme

A1 Journal Article in LETTERS IN APPLIED MICROBIOLOGY

2011

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

Marie JoossensGeert HuysMargo CnockaertVicky De PreterKristin VerbekePaul RutgeertsPeter VandammeSeverine Vermeire

A1 Journal Article in GUT

High-throughput method for comparative analysis of denaturing gradient gel electrophoresis profiles from human fecal samples reveals significant increases in two bifidobacterial species after inulin-type prebiotic intake

Marie JoossensGeert HuysKristel Van SteenMargo CnockaertSeverine VermeirePaul RutgeertsKristin VerbekePeter VandammeVicky De Preter

A1 Journal Article in FEMS MICROBIOLOGY ECOLOGY

Identification and epidemiological relationships of Aeromonas isolates from patients with diarrhea, drinking water and foods

M PablosGeert HuysMargo CnockaertJM Rodríguez-CallejaA OteroJA SantosML García-López

A1 Journal Article in INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

2010

Hafnia paralvei sp nov., formerly known as Hafnia alvei hybridization group 2

Geert HuysMargo CnockaertSharon L AbbottJ Michael JandaPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Intra- and interlaboratory performances of two commercial antimicrobial susceptibility testing methods for bifidobacteria and nonenterococcal lactic acid bacteria

Geert HuysKlaas D'HaeneMargo CnockaertLorenzo TosiMorten DanielsenAna Belen FlorezJaana MattoLars AxelssonJenni KorhonenSigrid Mayrhofer et al.

A1 Journal Article in ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

2007

Biodiversity of chloramphenicol-resistant mesophilic heterotrophs from Southeast Asian aquaculture environments

Geert HuysK BARTIEMargo CnockaertDTH OANHNT PHUONGT SOMSIRIS CHINABUTFM YUSOFFM SHARIFFM GIACOMINI et al.

A1 Journal Article in RESEARCH IN MICROBIOLOGY

Burkholderia nodosa sp nov., isolated from root nodules of the woody Brazilian legumes Mimosa bimucronata and Mimosa scabrella

WM CHENSM DE FARIAEK JAMESGN ELLIOTTKY LINJH CHOUSY SHEUMargo CnockaertJI SPRENTPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2005

Aeromonas culicicola Pidiyar et al. 2002 is a later subjective synonym of Aeromonas veronii Hickman-Brenner et al. 1987

Geert HuysMargo CnockaertJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Distribution of tetracycline resistance genes in genotypically related and unrelated multiresistant Acinetobacter baumannii strains from different European hospitals

Geert HuysMargo CnockaertMario VaneechoutteN WOODFORDA NEMECL DIJKSHOORNJean Swings

A1 Journal Article in RESEARCH IN MICROBIOLOGY

Grouping of streptomycetes using 16S-ITS RFLP fingerprinting

Benjamin LanootMarc VancanneytBart HosteKatrien VandemeulebroeckeMargo CnockaertPeter DawyndtZH LIUY HUANGJean Swings

A1 Journal Article in RESEARCH IN MICROBIOLOGY

Intra- and interlaboratory performance of antibiotic disk-diffusion-susceptibility testing of bacterial control strains of relevance for monitoring aquaculture environments

Geert HuysMargo CnockaertK BARTIEDTH OANHNT PHUONGT SOMSIRIS CHINABUTFM YUSSOFFM SHARIFFM GIACOMINI et al.

A1 Journal Article in DISEASES OF AQUATIC ORGANISMS

Phenotypic and genotypic characterization of mutants of the virginiamycin producing strain 899 and its relatedness to the type strain of Streptomyces virginiae

Benjamin LanootMarc VancanneytBart HosteMargo CnockaertM PIECQFrancis GosseleJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Repetitive-DNA-element PCR fingerprinting and antibiotic resistance of pan-European multi-resistant Acinetobacter baumannii clone III strains

Geert HuysMargo CnockaertA NEMECL DIJKSHOORNS BRISSEMario VaneechoutteJean Swings

A1 Journal Article in JOURNAL OF MEDICAL MICROBIOLOGY

Sequence-based typing of adeB as a potential tool to identify intraspecific groups among clinical strains of multidrug-resistant Acinetobacter baumannii

Geert HuysMargo CnockaertA NEMECJean Swings

A1 Journal Article in JOURNAL OF CLINICAL MICROBIOLOGY

2004

BOX-PCR fingerprinting as a powerful tool to reveal synonymous names in the genus Streptomyces. Emended descriptions are proposed for the species Streptomyces cinereorectus, S-fradiae, S-tricolor, S-colombiensis, S-filamentosus, S-vinaceus and S-phaeopurpureus

Benjamin LanootMarc VancanneytPeter DawyndtMargo CnockaertJL ZHANGY HUANGZH LIUJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

Caenibacterium thermophilum is a later synonym of Schlegelella thermodepolymerans

T LUTKE-EVERSLOHK ELBANNAMargo CnockaertJ MERGAERTJean SwingsCM MANAIAA STEINBUCHEL

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2003

Aeromonas hydrophila subsp ranae subsp nov., isolated from septicaemic farmed frogs in Thailand

Geert HuysM PEARSONP KAMPFERR DENYSMargo CnockaertV INGLISJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Denitrification and pesticide elimination in drinking water treatment with the biodegradable polymer poly(epsilon-caprolactone) (PCL)

A BOLEYJ MERGAERTC MULLERH LEBRENZMargo CnockaertWR MULLERJean Swings

A1 Journal Article in ACTA HYDROCHIMICA ET HYDROBIOLOGICA

Escherichia albertii sp nov., a diarrhoeagenic species isolated from stool specimens of Bangladeshi children

Geert HuysMargo CnockaertJM JANDAJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Kerstersia gyiorum gen. nov., sp nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Ruger and Tan 1983 as Achromobacter denitrificans comb nov

Tom CoenyeMarc VancanneytMargo CnockaertE FALSENJean SwingsPeter Vandamme

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Taxonomic study of Cellvibrio strains and description of Cellvibrio ostraviensis sp nov., Cellvibrio fibrivorans sp nov and Cellvibrio gandavensis sp nov

J MERGAERTD LEDNICKAJ GORISMargo CnockaertPaul De VosJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Thermomonas fusca sp nov and Thermomonas brevis sp nov., two mesophilic species isolated from a denitrification reactor with poly(epsilon-caprolactone) plastic granules as fixed bed, and emended description of the genus Thermomonas

J MERGAERTMargo CnockaertJean Swings

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Vibrio coralliilyticus sp nov., a temperature-dependent pathogen of the coral Pocillopora damicornis

Y BEN-HAIMFL THOMPSONCC THOMPSONMargo CnockaertBart HosteJean SwingsE ROSENBERG

A1 Journal Article in INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

2002

Diversity of 746 heterotrophic bacteria isolated from microbial mats from ten Antarctic lakes.

Stefanie Van TrappenJoris MergaertSylvie Van EygenPeter DawyndtMargo CnockaertJean Swings

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY

2001

Comparison of the antimicrobial tolerance of oxytetracycline-resistant heterotrophic bacteria isolated from hospital sewage and freshwater fishfarm water in Belgium

Geert HuysDirk GeversRobin TemmermanMargo CnockaertRik DenysGlenn RhodesRoger PickupPatrick McGannMaura HineyPeter Smith et al.

A1 Journal Article in SYSTEMATIC AND APPLIED MICROBIOLOGY