Research Explorer

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Researcher

Maarten Dhaenens

Publications & Research Data

Awards & Distinctions

127 Results

2026

Enhancing glycopeptide annotation and glycan localization using electron activated dissociation through a multiplexed parallel reaction monitoring design of experiments

Hiba SalimRuben AlmeyLaura PontFernando BenaventeMaarten DhaenensEstela Giménez

A1 Journal Article in JOURNAL OF PROTEOMICS

High-throughput quantification of spike protein expression by LC–MS for mRNA-LNP evaluation and immune response profiling

Ruben AlmeyKevin MwangiAmélie De MaesschalckThomas EhouarneSieglinde De CaePathmanaban RamasamyMarijn Van HulleIne LentackerBert SchepensDieter Deforce et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

The use of palaeoproteomics in the functional analyses of flint tools

Éva HalbruckerAlexandra BurnettIan EngelsMaarten DhaenensPhilippe CrombéEmanuela Cristiani

2025

Aflatoxin B1 induces subtle but coordinated histone modifications in Epstein-Barr virus infected and non-infected Burkitt lymphoma cells

Thanos Mouchtaris MichailidisLaura CorveleynRuben AlmeyYasmine BaderGrace A. OdongoZdenko HercegRita KhoueirySarah De SaegerMarthe De BoevreMaarten Dhaenens

A1 Journal Article in ENVIRONMENT INTERNATIONAL

Classification of collagens via peptide ambiguation, in a paleoproteomic LC-MS/MS-based taxonomic pipeline

Ian EngelsAlexandra BurnettPrudence RobertCamille PironneauGrégory AbramsRobbin BouwmeesterPeter Van Der PlaetsenKévin Di ModicaMarcel OtteLawrence Guy Straus et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Collagenase-modified polydopamine nanoparticles for safe and effective vitreolysis

An-Katrien MinnaertVan-Phuc NguyenAranit HarizajIlia GoemaereBart Van PuyveldeMaarten DhaenensFélix SauvageDieter DeforceStefano SalmasoPaolo Caliceti et al.

A1 Journal Article in JOURNAL OF CONTROLLED RELEASE

Cracking the histone code : mass spectrometry-based insights into epigenetic regulation in cancer

Laura CorveleynDieter DeforceMaarten Dhaenens

Cyclic poly(2-methyl-2-oxazoline)-lipid conjugates are good alternatives to poly(ethylene glycol)-lipids for lipid nanoparticle mRNA formulation

Bianka GolbaZifu ZhongMatteo RomioRuben AlmeyDieter DeforceMaarten DhaenensNiek SandersEdmondo M. BenettiBruno De Geest

A1 Journal Article in BIOMACROMOLECULES

Multi-omics, multi-tissue analysis reveal role of extracellular matrix remodeling and lipid transport dysfunction in edematous malnutrition (kwashiorkor)

Fabienne NackersKirrily De PolnayRuben AlmeySimon DaledAzahir Dan DjiboSarah DeSaegerDieter DeforceMaarten DhaenensYannick GansemansGriet Glorieux et al.

Potential of proteomics in forensic phenotyping : a focus on biological sex estimation

Shirin AlexRuben AlmeyRachel Sian DennisOlivier TytgatRobbin BouwmeesterDieter DeforceMarcel De PuitMaarten DhaenensLaura De Clerck

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

PRC1 and PRC2 proximal interactome in mouse embryonic stem cells

Dick W. ZijlmansSuzan StellooDanique BaxYavor YordanovPien ToeboschMaximilian W.D. RaasSigrid VerhelstLieke A. LamersMarijke P.A. BaltissenPascal W.T.C. Jansen et al.

A1 Journal Article in CELL REPORTS

Profiling histone post-translational modifications to identify signatures of epigenetic drug response in T-cell acute lymphoblastic leukemia

Laura CorveleynLien ProvezOsman SatilmisNina RefhagenMattias LandforsWouter SleeckxBéatrice LintermansAmélie De MaesschalckRishi S. KotechaBarbara De Moerloose et al.

Silencing the noise... Addressing common artifacts in histone proteomics

Ruben AlmeyDieter DeforceMaarten Dhaenens

The interplay of dietary mycotoxins and oncogenic viruses toward human carcinogenesis : a scoping review

Thanos Mouchtaris MichailidisSarah De SaegerRita KhoueiryGrace A. OdongoYasmine BaderMaarten DhaenensZdenko HercegMarthe De Boevre

A1 Journal Article in CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Transitioning to the Neolithic in Belgium : a multidisciplinary analysis of stone tools

Éva HalbruckerIan EngelsAlexandra BurnettMaarten DhaenensEmanuela CristianiSolène DenisPhilippe Crombé

Transitioning to the Neolithic through stone tools in Belgium

Éva HalbruckerAlexandra BurnettIan EngelsMaarten DhaenensEmanuela CristianiSolène DenisPhilippe Crombé

2024

'Judith' and the six other unknowns : a biomolecular and physical anthropological study

Isabelle De GrooteJessica PalmerPrudence RobertIJk van HattumMaïté RivollatSamuel BodéKasper HobinFrank VanhaeckeAlexandra BurnettMaarten Dhaenens et al.

Bookchapter in Judith of West Francia, Carolingian princess and first countess of Flanders

A targeted LC-MRM3 proteomic approach for the diagnosis of SARS-CoV-2 infection in nasopharyngeal swabs

Nicolas DrouinHyung L. ElfrinkStefan A. BoersSam van HugtenEls WesselsJutte J.C. de VriesGeert H. GroeneveldPaul MiggielsBart Van PuyveldeMaarten Dhaenens et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Acoustic Ejection Mass Spectrometry Empowers Ultra-Fast Peptide Biomarker Quantification... A Paradigm shift

Bart Van PuyveldeChristie L. HunterMaxim ZhgamadzeSudha SavantY Oliver WangEsthelle HoedtKoen RaedscheldersMatt PopeCarissa A HuynhV Krishnan Ramanujan et al.

Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification

Bart Van PuyveldeChristie L. HunterMaxim ZhgamadzeSudha SavantY. Oliver WangEsthelle HoedtKoen RaedscheldersMatt PopeCarissa A. HuynhV. Krishnan Ramanujan et al.

A1 Journal Article in NATURE COMMUNICATIONS

Effects of hypothermia and hypoxia on cytochrome P450‐mediated drug metabolism in neonatal Göttingen minipigs

Marina‐Stefania StroeLaura De ClerckMaarten DhaenensRachel Sian DennisDieter DeforceSebastien CarpentierPieter AnnaertKaren LeysAnne SmitsKarel Allegaert et al.

A1 Journal Article in BASIC & CLINICAL PHARMACOLOGY & TOXICOLOGY

Epigenetics in personalized toxicity

Laura CorveleynSigrid VerhelstDieter DeforceMaarten Dhaenens

Bookchapter in Personalized epigenetics : a volume in translational epigenetics

Mass spectrometry-based profiling of single-cell histone post-translational modifications to dissect chromatin heterogeneity

Ronald CutlerLaura CorveleynClaudia CtorteckaJoshua CantlonSebastian Alvaro Jacome VacaDieter DeforceJan VijgMaarten DhaenensMalvina PapanastasiouSteven A. Carr et al.

The promise of omics approaches for pediatric drug development

Sigrid VerhelstTess GoessensRoger Peró GascónMarthe De BoevreFrancis ImpensDieter DeforceMaarten Dhaenens

Bookchapter in Essentials of translational pediatric drug development : from past needs to future oportunities

2023

Analysing (epi)genetic toxicity caused by multi-mycotoxin exposure using an intestinal and hepatic cell culture model

Yasmine BaderRuben AlmeyMaarten DhaenensTess GoessensSarah De SaegerMarthe De Boevre

Cathepsin-L secreted by high-quality bovine embryos exerts an embryotrophic effect in vitro

Annelies RaesEline WydoogheKrishna Chaitanya PavaniOsvaldo Américo Bogado PascottiniKatleen Van SteendamMaarten DhaenensAnnekatrien BoelSonia HerasBjörn HeindryckxLuc Peelman et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Epidrugs in cancer : epigenetic profiling to improve treamtent for T-cell lymphoblastic leukemia and lymphoma

Lien ProvezPieter Van VlierbergheSteven GoossensMaarten Dhaenens

First insights into human mobility in Neolithic Belgium using strontium isotopic analysis and proteomics : a case study of Grotte de La Faucille (Sclayn, province of Namur)

IJk van HattumMarta Costas RodriguezKasper HobinFrank VanhaeckeHans VandendriesscheHélène ColletPierre CattelainMichel ToussaintQuentin GoffetteMaarten Dhaenens et al.

A1 Journal Article in AMERICAN JOURNAL OF BIOLOGICAL ANTHROPOLOGY

HuMyco : mapping the human mycobolome and cancer-risk association through epidemiologic and mechanistic studies

Tess GoessensLia VisintinTruong Nhat NguyenYasmine BaderMaarten DhaenensEugenio AlladioPatrick BakkerAlexander StockdaleSarah De SaegerMarthe De Boevre

Micro‐topographies induce epigenetic reprogramming and quiescence in human mesenchymal stem cells

Steven VermeulenBart Van PuyveldeLaura Bengtsson del BarrioRuben AlmeyBernard K. van der VeerDieter DeforceMaarten DhaenensJan de Boer

A1 Journal Article in ADVANCED SCIENCE

The wonderful world of histones and stem cells : a fairy tale written by mass spectrometry

Sigrid VerhelstDieter DeforceMaarten Dhaenens

Transferable mass spectrometry methods : forensics in time : palaeoproteomics

Alexandra BurnettRachel Sian DennisSimon DaledDieter DeforceLaura De ClerckMaarten Dhaenens

Bookchapter in Applications of mass spectrometry for the provision of forensic intelligence : state-of-the-art and perspectives

2022

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van PuyveldeSimon DaledSander WillemsRalf GabrielsAnne Gonzalez de PeredoKarima ChaouiEmmanuelle Mouton-BarbosaDavid BouyssiéKurt BoonenChristopher J. Hughes et al.

A1 Journal Article in SCIENTIFIC DATA

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

A1 Journal Article in SCIENTIFIC REPORTS

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Lien ProvezBart Van PuyveldeLaura CorveleynNina DemeulemeesterSigrid VerhelstBeatrice LintermansSimon DaledJuliette RoelsLieven ClementLennart Martens et al.

A1 Journal Article in SCIENTIFIC DATA

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Sander WillemsSimon DaledBart Van PuyveldeLaura De ClerckSofie Vande CasteeleFilip Van NieuwerburghDieter DeforceMaarten Dhaenens

Collaborative science : from proteomics method development to core facility

Simon DaledDieter DeforceMaarten Dhaenens

Cov²MS : an automated and quantitative matrix-independent assay for mass spectrometric measurement of SARS-CoV-2 nucleocapsid protein

Bart Van PuyveldeKatleen Van UytfangheLaurence Van OudenhoveRalf GabrielsTessa Van RoyenArne MatthysMorteza RazaviRichard YipTerry PearsonNicolas Drouin et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

Integrated multi-omics reveal polycomb repressive complex 2 restricts human trophoblast induction

Dick W. ZijlmansIrene TalonSigrid VerhelstAdam BendallKarlien Van NerumAlok JavaliAndrew A. MalcolmSam S. F. A. van KnippenbergLaura BigginsSan Kit To et al.

A1 Journal Article in NATURE CELL BIOLOGY

Proteomic comparison of three wild-type pseudorabies virus strains and the attenuated bartha strain reveals reduced incorporation of several tegument proteins in bartha virions

Jonas DelvaSimon DaledCliff Van WaesbergheRuben AlmeyRobert J. J. JansensDieter DeforceMaarten DhaenensHerman Favoreel

A1 Journal Article in JOURNAL OF VIROLOGY

Tools for bridging discovery proteomics and pandemic preparedness

Bart Van PuyveldeDieter DeforceMaarten Dhaenens

2021

Add mass spectrometry to the pandemic toolbox

Bart Van PuyveldeMaarten Dhaenens

Editorial material

An experimental design to extract more information from MS-based histone studies

Laura De ClerckSander WillemsSimon DaledBart Van PuyveldeSigrid VerhelstLaura CorveleynDieter DeforceMaarten Dhaenens

A1 Journal Article in MOLECULAR OMICS

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatLaurence Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid Verhelst et al.

A2 Journal Article in JACS AU

Ferroptosis induction in multiple myeloma cells triggers DNA methylation and histone modification changes associated with cellular senescence

Emilie LogieBart Van PuyveldeBart CuypersAnne SchepersHerald BerghmansJelle VerdonckKris LaukensLode GodderisMaarten DhaenensDieter Deforce et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Hepatic cytochrome P450 abundance and activity in the developing and adult Gottingen Minipig : Pivotal data for PBPK modeling

Laura BuyssensLaura De ClerckWim SchelstraeteMaarten DhaenensDieter DeforceMiriam AyusoChris Van GinnekenSteven Van Cruchten

A1 Journal Article in FRONTIERS IN PHARMACOLOGY

Histone clipping : the punctuation in the histone code

Maarten Dhaenens

Editorial material

Histone sample preparation for bottom-up mass spectrometry : a roadmap to informed decisions

Simon DaledSander WillemsBart Van PuyveldeLaura CorveleynSigrid VerhelstLaura De ClerckDieter DeforceMaarten Dhaenens

A2 Journal Article in PROTEOMES

Large scale toxicoepigenetics on histones : a mass spectrometry-based screening assay applied to developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

The CD147 protein complex is involved in entry of Chikungunya virus and related alphaviruses in human cells

Lien De CaluweSandra CoppensKatleen VereeckenSimon DaledMaarten DhaenensXaveer Van OstadeDieter DeforceKevin K. ArienKoen Bartholomeeusen

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

An alphaherpesvirus exploits antimicrobial beta-defensins to initiate respiratory tract infection

Jolien Van CleemputKatrien PoelaertKathlyn LavalNathalie VanderheijdenMaarten DhaenensSimon DaledFilip BoyenFrank PasmansHans Nauwynck

A1 Journal Article in JOURNAL OF VIROLOGY

Break it to make it : from fragmented information to computational coherency in mass spectrometry based proteomics

Sander WillemsDieter DeforceMaarten Dhaenens

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid VerhelstLaura De ClerckSander WillemsBart Van PuyveldeSimon DaledDieter DeforceMaarten Dhaenens

A2 Journal Article in METHODSX

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van PuyveldeSander WillemsRalf GabrielsSimon DaledLaura De ClerckSofie Vande CasteeleAn StaesFrancis ImpensDieter DeforceLennart Martens et al.

A1 Journal Article in PROTEOMICS

2019

Deletion of mucosa-associated lymphoid tissue lymphoma translocation protein 1 in mouse T cells protects against development of autoimmune arthritis but leads to spontaneous osteoporosis

Elisabeth GilisDjoere GaublommeJens StaalKoen VenkenMaarten DhaenensStijn LambrechtJulie CoudenysTine DecruyNadia SchryversYasmine Driege et al.

A1 Journal Article in ARTHRITIS & RHEUMATOLOGY

Host intestinal biomarker identification in a gut leakage model in broilers

Fien De MeyerVenessa EeckhautRichard DucatelleMaarten DhaenensSimon DaledAnnelike DedeurwaerderMaarten De GussemFreddy HaesebrouckDieter DeforceFilip Van Immerseel

A1 Journal Article in VETERINARY RESEARCH

Host metabolites stimulate the bacterial proton motive force to enhance the activity of aminoglycoside antibiotics

Aurélie CrabbéLisa OstynSorien StaelensCharlotte RigautsMartijn RisseeuwMaarten DhaenensSimon DaledHeleen Van AckerDieter DeforceSerge Van Calenbergh et al.

A1 Journal Article in PLOS PATHOGENS

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De ClerckSander WillemsRoberta NoberiniCamilla RestelliniBart Van PuyveldeSimon DaledTiziana BonaldiDieter DeforceMaarten Dhaenens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Integrative proteomic profiling reveals PRC2-dependent epigenetic crosstalk maintains ground-state pluripotency

Guido van MierloRené AM DirksLaura De ClerckArie B BrinkmanMichelle HuthSusan L KloetNehmé SaksoukLeonie I KroezeSander WillemsMatthias Farlik et al.

A1 Journal Article in CELL STEM CELL

Prevention is better than cure : non-targeted and sensitive screening of impurities in plasma-derived immunoglobulin with mass spectrometry-based proteomics

Franck LimonierDieter DeforceMyriam SneyersMaarten Dhaenens

The role of small proteins in Burkholderia cenocepacia J2315 biofilm formation, persistence and intracellular growth

Heleen Van AckerAurélie CrabbéDukas JurėnasLisa OstynAndrea SassSimon DaledMaarten DhaenensDieter DeforceEline TeirlinckHerlinde De Keersmaecker et al.

A2 Journal Article in BIOFILM

Tracking changes in the histone modification pattern by untargeted mass spectrometry : how naïve are human embryonic stem cells and data-dependent acquisition?

Laura De ClerckDieter DeforceMaarten Dhaenens

Untargeted histone profiling during naive conversion uncovers conserved modification markers between mouse and human

Laura De ClerckJasin TaelmanMina PopovicSander WillemsMargot Van der JeughtBjörn HeindryckxPetra De SutterHendrik MarksDieter DeforceMaarten Dhaenens

A1 Journal Article in SCIENTIFIC REPORTS

2018

Candidate Treponema pallidum biomarkers uncovered in urine from individuals with syphilis using mass spectrometry

Kara K. OsbakGeert A. Van RaemdonckMartin DomCaroline E. CameronConor J. MeehanDieter DeforceXaveer Van OstadeChris R. KenyonMaarten Dhaenens

A1 Journal Article in FUTURE MICROBIOLOGY

Estimating the reliability of low-abundant signals and limited replicate measurements through MS2 peak area in SWATH

Franck LimonierSander WillemsGeneviève WaeterloosMyriam SneyersMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Methods matter : towards the implementation of label-free MS in the context of hESC histone epigenetics

Elisabeth GovaertDieter DeforceMaarten Dhaenens

Plasma functionalization of polycaprolactone nanofibers changes protein interactions with cells, resulting in increased cell viability

Mahtab AsadianMaarten DhaenensYuliia OnyshchenkoStijn De WaeleHeidi DeclercqPieter CoolsBart DevreeseDieter DeforceRino MorentNathalie De Geyter

A1 Journal Article in ACS APPLIED MATERIALS & INTERFACES

Skin mucosome activity as an indicator of Batrachochytrium salamandrivorans susceptibility in salamanders

Hannah Keely SmithFrank PasmansMaarten DhaenensDieter DeforceDries BonteKris VerheyenLuc LensAn Martel

A1 Journal Article in PLOS ONE

2017

Comparison of fractionation proteomics for local SWATH library building

Elisabeth GovaertKatleen Van SteendamSander WillemsLiesbeth VossaertMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Flagging false positives following untargeted LCMS characterization of histone PTM combinations

Sander WillemsMaarten DhaenensElisabeth GovaertLaura De ClerckPaulien MeertChristophe Van NesteFilip Van NieuwerburghDieter Deforce

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion

Sander WillemsSenne CornelisYannick GansemansBart BroeckxDieter De ConinckChristophe Van NesteMaarten DhaenensDieter DeforceFilip Van Nieuwerburgh

A1 Journal Article in FORENSIC SCIENCE INTERNATIONAL-GENETICS

2016

Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells

Ellen ScheerlinckKatleen Van SteendamSimon DaledElisabeth GovaertLiesbeth VossaertPaulien MeertFilip Van NieuwerburghAnn Van SoomLuc PeelmanPetra De Sutter et al.

A1 Journal Article in PROTEOMICS

Extracting histones for the specific purpose of label-free MS

Elisabeth GovaertKatleen Van SteendamEllen ScheerlinckLiesbeth VossaertPaulien MeertMartina StellaSander WillemsLaura De ClerckMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Histone code caution : clipping and proper propionylation

Paulien MeertDieter DeforceMaarten DhaenensLiesbeth Vossaert

Host stress drives Salmonella recrudescence

Elin VerbruggheMaarten DhaenensBregje LeymanFilip BoyenNeil ShearerAlexander Van ParysRoel HaesendonckWim BertHerman FavoreelDieter Deforce et al.

A1 Journal Article in SCIENTIFIC REPORTS

Host stress drives Salmonella recrudescence (vol 6, 20849, 2016)

Elin VerbruggheMaarten DhaenensBregje LeymanFilip BoyenNeil ShearerAlexander Van ParysRoel HaesendonckWim BertHerman FavoreelDieter Deforce et al.

Human embryonic stem cells : from the follow-up of pluripotency to quantitative peptide analysis

Ellen ScheerlinckDieter DeforceKatleen Van SteendamMaarten Dhaenens

Israeli acute paralysis virus infection leads to an enhanced RNA interference response and not its suppression in the bumblebee Bombus terrestris

Kaat CappelleGuy SmaggheMaarten DhaenensIvan Meeus

A1 Journal Article in VIRUSES-BASEL

Tackling aspecific side reactions during histone propionylation: the promise of reversing overpropionylation

Paulien MeertSebastiaan DierickxElisabeth GovaertLaura De ClerckSander WillemsMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

2015

Exposure of Aspergillus fumigatus to T-2 toxin results in a stress response associated with exacerbation of aspergillosis in poultry

Shaoji LiMaarten DhaenensAn GarmynElin VerbrugghePascale Van RooijSarah De SaegerMia EeckhoutRichard DucatelleSiska CroubelsFreddy Haesebrouck et al.

A1 Journal Article in WORLD MYCOTOXIN JOURNAL

Histone proteolysis : a proposal for categorization into clipping and degradation

Maarten DhaenensPieter GlibertPaulien MeertLiesbeth VossaertDieter Deforce

A1 Journal Article in BIOESSAYS

Minimizing technical variation during sample preparation prior to label-free quantitative mass spectrometry

Ellen ScheerlinckMaarten DhaenensAnn Van SoomLuc PeelmanPetra De SutterKatleen Van SteendamDieter Deforce

A1 Journal Article in ANALYTICAL BIOCHEMISTRY

Phospho-iTRAQ : assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry

Pieter GlibertPaulien MeertKatleen Van SteendamFilip Van NieuwerburghDieter De ConinckLennart MartensMaarten DhaenensDieter Deforce

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Phospho-iTRAQ data article : assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry

Pieter GlibertPaulien MeertKatleen Van SteendamLennart MartensDieter DeforceMaarten Dhaenens

A2 Journal Article in DATA IN BRIEF

Pitfalls in histone propionylation during bottom-up mass spectrometry analysis

Paulien MeertElisabeth GovaertEllen ScheerlinckMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

ScsA as a major driver for increased survival of Salmonella during a stress response

Elin VerbruggheMaarten DhaenensBregje LeymanFilip BoyenNeil ShearerAlexander Van ParysRoel HaesendonckWim BertHerman FavoreelDieter Deforce et al.

2014

Detailed method description for noninvasive monitoring of differentiation status of human embryonic stem cells

Ellen ScheerlinckKatleen Van SteendamMado VandewoestyneTrees LepezVeerle GobinPaulien MeertLiesbeth VossaertFilip Van NieuwerburghAnn Van SoomLuc Peelman et al.

A1 Journal Article in ANALYTICAL BIOCHEMISTRY

Histone H3 clipping in human embryonic stem cells: in pursuit of an epigenetic outcast

Liesbeth VossaertDieter DeforcePetra De SutterMaarten Dhaenens

Identification of histone H3 clipping activity in human embryonic stem cells

Liesbeth VossaertPaulien MeertEllen ScheerlinckPieter GlibertNadine Van RoyBjörn HeindryckxPetra De SutterMaarten DhaenensDieter Deforce

A1 Journal Article in STEM CELL RESEARCH

iTRAQ as a method for optimization : enhancing peptide recovery after gel fractionation

Pieter GlibertKatleen Van SteendamMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Neutrophil elastase in the capacity of the 'H2A-specific protease'

Maarten DhaenensPieter GlibertStijn LambrechtLiesbeth VossaertKatleen Van SteendamDirk ElewautDieter Deforce

A1 Journal Article in INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Quantitative proteomics to characterize specific histone H2A proteolysis in chronic lymphocytic leukemia and the myeloid THP-1 cell line

Pieter GlibertLiesbeth VossaertKatleen Van SteendamStijn LambrechtFilip Van NieuwerburghFritz OffnerThomas KippsMaarten DhaenensDieter Deforce

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

ScsA as a major driver for increased survival of Salmonella during a stress response

Elin VerbruggheMaarten DhaenensBregje LeymanFilip BoyenNeil ShearerAlexander Van ParysRoel HaesendonckWim BertHerman FavoreelDieter Deforce et al.

Species identification from hair by means of spectral library searches

Katleen Van SteendamOdile De WulfMaarten DhaenensDieter Deforce

A1 Journal Article in INTERNATIONAL JOURNAL OF LEGAL MEDICINE

The quest for true post-translational protein modifications through label-based quantitative mass spectrometry

Pieter GlibertDieter DeforceMaarten Dhaenens

2013

Mass spectrometry-based proteomics as a tool to identify biological matrices in forensic science

Katleen Van SteendamMarlies De CeuleneerMaarten DhaenensDavid Van HoofstatDieter Deforce

A1 Journal Article in INTERNATIONAL JOURNAL OF LEGAL MEDICINE

PiTRAQ, a strategy to simultaneously correlate protein expression and phosphorylation stoichiometry between different samples : evaluation on different mass spectrometers

Pieter GlibertMaarten DhaenensPaulien MeertNiklaas ColaertFilip Van NieuwerburghLennart MartensDieter Deforce

Proteomic analysis of the excretory-secretory products from larval stages of Ascaris suum reveals high abundance of glycosyl hydrolases

Tao WangKatleen Van SteendamMaarten DhaenensJohnny VlaminckDieter DeforceAaron R JexRobin B GasserPeter Geldhof

A1 Journal Article in PLOS NEGLECTED TROPICAL DISEASES

2012

Batrachochytrium dendrobatidis zoospore secretions rapidly disturb intercellular junctions in frog skin

Melanie BrutynKatharina D'HerdeMaarten DhaenensPascale Van RooijElin VerbruggheAlex D HyattSiska CroubelsDieter DeforceRichard DucatelleFreddy Haesebrouck et al.

A1 Journal Article in FUNGAL GENETICS AND BIOLOGY

Development of a dedicated peptide tandem mass spectral library for conservation science

Wim FremoutMaarten DhaenensSteven SaverwynsJana SanyovaPeter VandenabeeleDieter DeforceLuc Moens

A1 Journal Article in ANALYTICA CHIMICA ACTA

Evaluation of a strategy for parallel protein phosphorylation and expression analysis

Pieter GlibertMaarten DhaenensPaulien MeertNiklaas ColaertFilip Van NieuwerburghLennart MartensDieter Deforce

In vivo relevance of citrullinated proteins and the challenges in their detection

Marlies De CeuleneerKatleen Van SteendamMaarten DhaenensDieter Deforce

A1 Journal Article in PROTEOMICS

Proteomic analysis of the excretory-secretory products of the larval stages of Ascaris suum

Tao WangKatleen Van SteendamMaarten DhaenensJohnny VlaminckDieter DeforceAaron JexRobin B GasserJozef VercruyssePeter Geldhof

Quantification of citrullination by means of skewed isotope distribution pattern

Marlies De CeuleneerKatleen Van SteendamMaarten DhaenensDirk ElewautDieter Deforce

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

T-2 toxin induced Salmonella Typhimurium intoxication results in decreased Salmonella numbers in the cecum contents of pigs, despite marked effects on Salmonella-host cell interactions

Elin VerbruggheVirginie VandenbrouckeMaarten DhaenensNeil ShearerJoline GoossensSarah De SaegerMia EeckhoutKatharina D'HerdeArthur ThompsonDieter Deforce et al.

A1 Journal Article in VETERINARY RESEARCH

2011

Antihypertensive effect of insect cells: in vitro and in vivo evaluation

Dorien StaljanssensJohn Van CampGriet HerregodsMaarten DhaenensDieter DeforceJohan Van de VoordeGuy Smagghe

A1 Journal Article in PEPTIDES

From dysregulated protein expression to histone clipping: the virtue of mass spectrometry: a proteomics tale of serendipity

Maarten DhaenensDieter Deforce

Laser microdissection for the assessment of the clonal relationship between chronic lymphocytic leukemia/small lymphocytic lymphoma and proliferating B cells within lymph node pseudofollicles

Mado VandewoestyneValerie PedeKathleen LambeinMaarten DhaenensFritz OffnerMarleen PraetJan PhilippéThomas J KippsDieter Deforce

A1 Journal Article in LEUKEMIA

Neutrophil elastase is the 'histone H2A-specific protease'

Pieter GlibertMaarten DhaenensStijn LambrechtDirk ElewautFritz OffnerTJ KippsDieter Deforce

2010

Proteome characterization of human articular chondrocytes leads to novel insights in the function of small heat-shock proteins in chondrocyte homeostasis

Stijn LambrechtMaarten DhaenensKarl AlmqvistPeter VerdonkAugust VerbruggenDieter DeforceDirk Elewaut

A1 Journal Article in OSTEOARTHRITIS AND CARTILAGE

Tryptic peptide analysis of protein binders in works of art by liquid chromatography-tandem mass spectrometry

Wim FremoutMaarten DhaenensSteven SaverwynsJana SanyovaPeter VandenabeeleDieter DeforceLuc Moens

A1 Journal Article in ANALYTICA CHIMICA ACTA

2009

A proteomic approach applied on Rembrandt's ground layers

Wim FremoutMaarten DhaenensSteven SaverwynsSanyova JanaPeter VandenabeeleDieter DeforceLuc Moens

Comparative proteome analysis of porcine follicular fluid and serum reveals that excessive alpha(2)-macroglobulin in serum hampers successful expansion of cumulus-oocyte complexes

Jo BijttebierKelly TillemanMaarten DhaenensDieter DeforceAnn Van SoomDominiek Maes

A1 Journal Article in PROTEOMICS

Dendritic cells from spondylarthritis-prone HLA-B27-transgenic rats display altered cytoskeletal dynamics, class II major histocompatibility complex expression, and viability

Maarten DhaenensIngrid FertSimon GlatignySaskia HaerinckCécile PoulainEmmanuel DonnadieuCécile Hacquard-BouderClaudine AndréDirk ElewautDieter Deforce et al.

A1 Journal Article in ARTHRITIS AND RHEUMATISM

Proteomic study to identify factors in follicular fluid and/or serum involved in in vitro cumulus expansion of porcine oocytes

Jo BijttebierKelly TillemanDieter DeforceMaarten DhaenensAnn Van SoomDominiek Maes

2008

A new approach for defining the relative contribution of co-migrating proteins to spot intensity in 2D-PAGE

Maarten DhaenensSofie VandecasteeleDieter Deforce

Dendritic Cells from Spondyloarthritis-prone HLA-B27 Transgenic Rat Display Altered Cytoskeletal Dynamics, MHC Class II Expression, and Viability.

Maarten DhaenensIngrid FertSimon GlatignySaskia HaerinckCéline PoulainEmanuel DonnadieuCécile Hacquard-BouderClaudine AndréDirk ElewautDieter Deforce et al.

Dendritic Cells from Spondyloarthritis-prone HLA-B27 Transgenic Rat Display Altered Cytoskeletal Dynamics, MHC Class II Expression, and Viability.

Maarten DhaenensFert IngridGlatigny SimonSaskia HaerinckCeline PoulainEmanuel DonnadieuCéline Hacquard-BouderClaudine AndréDirk ElewautDieter Deforce et al.

Evidence for Altered Cytoskeleton Mobilization Pathway in Splenic Dendritic Cells (DC) from HLA-B27/human b2 microglobulin Transgenic Rats (B27-rats)

Maarten DhaenensIngrid FertSimon GlatignySaskia HaerinckCeline Hacquard-BouderClaudine AndréDirk ElewautDieter DeforceMaxime Breban

Identification and possible citrullination of antigens in immune complexes in patients with rheumatoid arthritis

Katleen Van SteendamKelly TillemanMarlies De CeuleneerMaarten DhaenensDirk ElewautFilip De KeyserDieter Deforce

Identification of factors in follicular fluid and/or serum involved in in vitro cumulus expansion of porcine oocytes

Jo BijttebierKelly TillemanDieter DeforceMaarten DhaenensAnn Van SoomDominiek Maes

Transgenic rat OX62(+) DCs exhibit multiple cellular deficiencies and the tolerigenic CD4(-) subset suffers reduced viability

Maarten DhaenensIngrid FertSimon GlatignySaskia HaerinckCeline Hacquard-BouderClaudine AndréDirk ElewautDieter DeforceMaxime Breban

Tryptic peptide analysis of protein binders in works of art by liquid chromatography–tandem mass spectrometry

Wim FremoutMaarten DhaenensSteven SaverwynsJana SanyovaPeter VandenabeeleDieter DeforceLuc Moens

2007

Tackling the challenge of quantifying co-migrating proteins in two dimensional gel electrophoresis-based proteome analysis

Maarten DhaenensSofie VandecasteeleDieter Deforce

2006

Contribution to the study of the post-embryonic development and reproduction of the African millipede Epibolus pulchripes (Gerstacker, 1873) (Diplopoda, Pachybolidae)

Maarten DhaenensDidier VandenSpiegel

A1 Journal Article in BELGIAN JOURNAL OF ZOOLOGY

Disease mechanism in Spondyloarthropathies: a proteome analysis of spleen dendritic cells from HLA-B27 transgenic rats.

Maarten DhaenensIngrid FertCecile Hacquard-BouderDirk ElewautDieter DeforceMaxime Breban

2002

Contribution to the study of the post-embryonic development of the East African millipede Epibolus pulchripes (Pachybolidae)

Maarten DhaenensDidier Vandenspiegel