Research Explorer

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Researcher

Lieven Sterck

Awards & Distinctions

60 Results

2024

The Plant PTM Viewer 2.0 : in-depth exploration of plant protein modification landscapes

Patrick WillemsLieven SterckAvilien DardJingjing HuangIve De SmetKris GevaertFrank Van Breusegem

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

Transcriptional chronology reveals conserved genes involved in pennate diatom sexual reproduction

Sien AudoorGust BilckeKaterina ParganaDarja BelišováSander ThierensMichiel Van BelLieven SterckNadine RijsdijkRossella AnnunziataMaria Immacolata Ferrante et al.

A1 Journal Article in MOLECULAR ECOLOGY

2023

ABCB‐mediated shootward auxin transport feeds into the root clock

Jian ChenYangjie HuPengchao HaoTashi TseringJian XiaYuqin ZhangOhad RothMaria NjoLieven SterckYun Hu et al.

A1 Journal Article in EMBO REPORTS

2022

Adenosine monophosphate deaminase modulates BIN2 activity through hydrogen peroxide-induced oligomerization

Qing LuAnaxi HoubaertQian MaJingjing HuangLieven SterckCheng ZhangRené BenjaminsFrederik CoppensFrank Van BreusegemEugenia Russinova

A1 Journal Article in PLANT CELL

Maritime pine genomics in focus

Lieven SterckNuria de MaríaRafael A. CañasMarina de MiguelPedro PerdigueroAnnie RaffinKatharina B. BuddeMiriam López-HinojosaFrancisco R. CantónAndreia S. Rodrigues et al.

Bookchapter in The Pine Genomes

Self-incompatibility requires GPI anchor remodeling by the poppy PGAP1 ortholog HLD1

Zongcheng LinFei XieMarina Muñoz TriviñoTao ZhaoFrederik CoppensLieven SterckMaurice BoschVernonica E. Franklin-TongMoritz Nowack

A1 Journal Article in CURRENT BIOLOGY

Whole-genome sequences of two Kazachstania barnettii strains isolated from anthropic environments

Hugo DevillersVéronique SarilarCécile GrondinLieven SterckDiego SegondNoémie JacquesDelphine SicardSerge CasaregolaColin Tinsley

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

2021

Insights into the mechanisms implicated in Pinus pinaster resistance to pinewood nematode

Inês Sofia Barrios ModestoLieven SterckVicent ArbonaAurelio Gómez-CadenasIsabel CarrasquinhoYves Van de PeerCélia M. Miguel

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

2020

De novo assembly of transcriptomes from a B73 maize line introgressed with a QTL for resistance to gray leaf spot disease reveals a candidate allele of a lectin receptor-like kinase

Tanya WelgemoedRian PierneefLieven SterckYves Van de PeerVelushka SwartKevin Daniel ScheepersDave K. Berger

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

First draft genome assembly of the desert locust, Schistocerca gregaria

Heleen VerlindenLieven SterckJia LiZhen LiAnna YsselYannick GansemansRik VerdonckMichiel HoltofHojun SongSpencer T. Behmer et al.

A2 Journal Article in F1000RESEARCH

Genomics of clinal local adaptation in Pinus sylvestris under continuous environmental and spatial genetic setting

Jaakko S. TyrmiJaana VuoskuJuan J. AcostaZhen LiLieven SterckMaria T. CerveraOuti SavolainenTanja Pyhäjärvi

A1 Journal Article in G3-GENES GENOMES GENETICS

Molecular study of drought response in the Mediterranean conifer Pinus Pinaster Ait. : differential transcriptomic profiling reveals constitutive water deficit‐independent drought tolerance mechanisms

Nuria de MaríaMaría Ángeles GuevaraPedro PerdigueroMaría Dolores VélezJosé Antonio CabezasMiriam López‐HinojosaZhen LiLuís Manuel DíazAlberto PizarroJosé Antonio Mancha et al.

A1 Journal Article in ECOLOGY AND EVOLUTION

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms

Cristina OsunaGust BilckeEmmelien VancaesterSam De DeckerAtle M. BonesPer WingeNicole PoulsenPetra BulánkováBram VerhelstSien Audoor et al.

A1 Journal Article in NATURE COMMUNICATIONS

The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms (vol 11, 3320, 2020)

Cristina Maria Osuna CruzGust BilckeEmmelien VancaesterSam De DeckerAtle M. BonesPer WingeNicole PoulsenPetra BulánkováBram VerhelstSien Audoor et al.

instaGRAAL : chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

Lyam BaudryNadège GuiglielmoniHervé Marie-NellyAlexandre CormierMartial MarboutyKomlan AviaYann Loe MieOlivier GodfroyLieven SterckJ. Mark Cock et al.

A1 Journal Article in GENOME BIOLOGY

2019

ORCAE-AOCC : a centralized portal for the annotation of African orphan crop genomes

Anna EJ YsselShu-Min KaoYves Van de PeerLieven Sterck

A1 Journal Article in GENES

2018

Insights into the evolution of multicellularity from the sea lettuce genome

Olivier De ClerckShu-Min KaoKenny BogaertJonas BlommeFatima FoflonkerMichiel KwantesEmmelien VancaesterLisa VanderstraetenEylem Aydogdu LohausJens Boesger et al.

A1 Journal Article in CURRENT BIOLOGY

Ten steps to get started in Genome Assembly and Annotation

Victoria Dominguez Del AngelErik HjerdeLieven SterckSalvadors Capella-GutierrezCederic NotredameOlga Vinnere PetterssonJoelle AmselemLaurent BouriStephanie BocsChristophe Klopp et al.

A2 Journal Article in F1000RESEARCH

2017

Evidence for an ancient whole genome duplication in the cycad lineage

Danielle RoodtRolf LohausLieven SterckRiaan L SwanepoelYves Van de PeerEshchar Mizrachi

A1 Journal Article in PLOS ONE

Functional classification of protein toxins as a basis for bioinformatic screening

Surendra S NegiCatherine H ScheinGregory S LadicsHenry MirskyPeter ChangJean-Baptiste RascleJohn KoughLieven SterckSabitha PapineniJoseph M Jez et al.

A1 Journal Article in SCIENTIFIC REPORTS

Genome of wild olive and the evolution of oil biosynthesis

Turgay UnverZhangyan WuLieven SterckMine TurktasRolf LohausZhen LiMing YangLijuan HeTianquan DengFrancisco Javier Escalante et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome sequence of the type strain CLIB 1764T (= CBS 14374T) of the yeast species Kazachstania saulgeensis isolated from French organic sourdough

Véronique SarilarLieven SterckSaki MatsumotoNoémie JacquesCécile NeuvégliseColin R TinsleyDelphine SicardSerge Casaregola

A2 Journal Article in GENOMICS DATA

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus

Alexandre CormierKomlan AviaLieven SterckThomas DerrienValentin WucherGwendoline AndresMisharl MonsoorOlivier GodfroyAgnieszka LipinskaMarie-Mathilde Perrineau et al.

A1 Journal Article in NEW PHYTOLOGIST

Single-copy genes as molecular markers for phylogenomic studies in seed plants

Zhen LiAmanda R De La TorreLieven SterckFrancisco M CánovasConcepción AvilaIrene MerinoJose Antonio CabezasMaría Teresa CerveraPar K IngvarssonYves Van de Peer

A1 Journal Article in GENOME BIOLOGY AND EVOLUTION

The gene expression landscape of pine seedling tissues

Rafael A CañasZhen LiM Belén PascualVanessa Castro-RodríguezConcepción ÁvilaLieven SterckYves Van de PeerFrancisco M Cánovas

A1 Journal Article in PLANT JOURNAL

2016

Transcript profiling for early stages during embryo development in Scots pine

Irene MerinoMalin AbrahamssonLieven SterckBlanca Craven-BartleFrancisco CanovasSara von Arnold

A1 Journal Article in BMC PLANT BIOLOGY

Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

Michele PerazzolliNoemí HerreroLieven SterckLuisa LenziAlberto PellegriniGerardo PuopoloYves Van de PeerIlaria Pertot

A1 Journal Article in BMC GENOMICS

2015

Differential gene retention as an evolutionary mechanism to generate biodiversity and adaptation in yeasts

Guillaume MorelLieven SterckDominique SwennenMarina Marcet-HoubenDjamila OnesimeAnthony LevasseurNoémie JacquesSandrine MalletArnaux CoulouxKarine Labadie et al.

A1 Journal Article in SCIENTIFIC REPORTS

Exploration of alternative splicing events in ten different grapevine cultivars

Emilio PotenzaMilvia Luisa RacchiLieven SterckEmanuela CollerElisa AsquiniSilvio CE TosattoRiccardo VelascoYves Van de PeerAlessandro Cestaro

A1 Journal Article in BMC GENOMICS

Horsetails are ancient polyploids : evidence from Equisetum giganteum

Kevin VannesteLieven SterckAlexander Andrew MyburgYves Van de PeerEshchar Mizrachi

A1 Journal Article in PLANT CELL

2014

A haploid system of sex determination in the brown alga Ectocarpus sp.

Sophia AhmedJ Mark CockEugenie PessiaRemy LuthringerAlexandre CormierMarine RobuchonLieven SterckAkira F PetersSimon M DittamiErwan Corre et al.

A1 Journal Article in CURRENT BIOLOGY

Fast and accurate cDNA mapping and splice site identification

Michaël VyvermanDieter De SmedtYao-Cheng LinLieven SterckBernard De BaetsVeerle FackPeter Dawyndt

The genome of Eucalyptus grandis

Alexander A MyburgDario GrattapagliaGerald A TuskanUffe HellstenRichard D HayesJane GrimwoodJerry JenkinsErika LindquistHope TiceDiane Bauer et al.

A1 Journal Article in NATURE

2013

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne

Tom RuttinkLieven SterckAntje RohdeChristian BendixenPierre RouzéTorben AspYves Van de PeerIsabel Roldán-Ruiz

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

2012

Deconstruction of the (paleo)polyploid grapevine genome based on the analysis of transposition events involving NBS resistance genes

Giulia MalacarneMichele PerazzolliAlessandro CestaroLieven SterckPaolo FontanaYves Van de PeerRoberto ViolaRiccardo VelascoFrancesco Salamini

A1 Journal Article in PLOS ONE

Development of an SNP Identification Pipeline for Highly Heterozygous Crops

Tom RuttinkLieven SterckElke VermeulenAntje RohdeIsabel Roldán-Ruiz

Highly dynamic exon shuffling in candidate pathogen receptors... : what if brown algae were capable of adaptive immunity?

Antonios ZambounisMarek EliasLieven SterckFlorian MaumusClaire MM Gachon

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

ORCAE: online resource for community annotation of eukaryotes

Lieven SterckKenny BilliauThomas AbeelPierre RouzéYves Van de Peer

A1 Journal Article in NATURE METHODS

The Ectocarpus genome and brown algal genomics : the Ectocarpus Genome Consortium

J Mark CockLieven SterckSophia AhmedAndrew E AllenGrigoris AmoutziasVeronique AnthouardFrançois ArtiguenaveAlok ArunJean-Marc AuryJonathan H Badger et al.

A1 Journal Article in Advances in Botanical Research

2011

A molecular insight into algal-oomycete warfare: cDNA analysis of Ectocarpus siliculosus infected with the basal oomycete Eurychasma dicksonii

Laura Grenville-BriggsClaire MM GachonMartina StrittmatterLieven SterckFrithjof C KüpperPieter van West

A1 Journal Article in PLOS ONE

In silico survey of the mitochondrial protein uptake and maturation systems in the brown alga Ectocarpus siliculosus

Ludovic DelageCatherine LeblancPi Nyvall CollénBernhard GschloesslMarie-Pierre OudotLieven SterckJulie PoulainJean-Marc AuryMark J Cock

A1 Journal Article in PLOS ONE

Nature, nurture and the structure of macroalgal genomes

J Mark CockJonas CollénLieven SterckPierre RouzéDelphine ScornetVeronique AnthouardFrançois ArtiguenaveJean-Marie AuryKenny BilliauEric Bonnet et al.

The Medicago genome provides insight into the evolution of rhizobial symbioses

Nevin D YoungFrédéric DebelléGiles ED OldroydRene GeurtsSteven B CannonMichael K UdvardiVagner A BeneditoKlaus FX MayerJérôme GouzyHeiko Schoof et al.

A1 Journal Article in NATURE

2010

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

J Mark CockLieven SterckPierre RouzéDelphine ScornetAndrew E AllenGrigoris AmoutziasVéronique AnthouardFrançois ArtiguenaveJean-Marc AuryJonathan H Badger et al.

A1 Journal Article in NATURE

The genome of the domesticated apple (Malus x domestica Borkh.)

Riccardo VelascoAndrey ZharkikhJason AffourtitAmit DhingraAlessandro CestaroAnanth KalyanaramanPaolo FontanaSatish K BhatnagarMichela TroggioDmitry Pruss et al.

A1 Journal Article in NATURE GENETICS

2009

Evolution of multicellularity in the heterokont lineage : analysis of the Ectocarpus siliculosus genome sequence

J Mark CockDelphine ScornetAkira F PetersLieven SterckPierre RouzéYves Van de PeerJean WeissenbachPatrick Wincker

Global expression analysis of the brown alga Ectocarpus siliculosus (Phaeophyceae) reveals large-scale reprogramming of the transcriptome in response to abiotic stress

Simon DittamiDelphine ScornetJean-Louis PetitBéatrice SégurensCorinne Da SilvaErwan CorreMichael DondrupKarl-Heinz GlattingRainer KönigLieven Sterck et al.

A1 Journal Article in Genome Biology

PLAZA : a comparative genomics resource to study gene and genome evolution in plants

Sebastian ProostMichiel Van BelLieven SterckKenny BilliauThomas Van ParysYves Van de PeerKlaas Vandepoele

A1 Journal Article in PLANT CELL

The flowering world: a tale of duplications

Yves Van de PeerJeffrey FawcettSebastian ProostLieven SterckKlaas Vandepoele

A1 Journal Article in TRENDS IN PLANT SCIENCE

2008

Genome annotation in plants and fungi: EuGène as a model platform

Sylvain FoissacJérôme GouzyStephane RombautsCatherine MathéJoëlle AmselemLieven SterckYves Van de PeerPierre RouzéThomas Schiex

A1 Journal Article in CURRENT BIOINFORMATICS

Unravelling the complexity of eukaryotic genomes through gene annotation and evolutionary analysis

Lieven SterckYves Van de Peer

i-ADHoRe 2.0: an improved tool to detect degenerated genomic homology using genomic profiles

Cedric SimillionKoen JanssensLieven SterckYves Van de Peer

A1 Journal Article in BIOINFORMATICS

2007

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety

Riccardo VelascoAndrey ZharkikhMichela TroggioDustin A CartwrightAlessandro CestaroDmitry PrussMassimo PindoLisa M FitzGeraldSilvia VezzulliJulia Reid et al.

A1 Journal Article in PLOS ONE

Gene expression during the induction, maintenance, and release of dormancy in apical buds of poplar

Antje RohdeTom RuttinkVanessa HostynLieven SterckKlara Van DriesscheWout Boerjan

A1 Journal Article in JOURNAL OF EXPERIMENTAL BOTANY

How many genes are there in plants (... and why are they there)?

Lieven SterckStephane RombautsKlaas VandepoelePierre RouzéYves Van de Peer

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

The annotation and analysis of the genome of Arabidopsis lyrata

Jeffrey FawcettStephane RombautsPedro PattynLieven SterckYves Van de Peer

2006

Genetical metabolomics of flavonoid biosynthesis in Populus : a case study

Kris MorreelGeert GoeminneVeronique StormeLieven SterckJohn RalphWouter CoppietersPeter BreyneMarijke SteenackersMichel GeorgesEric Messens et al.

A1 Journal Article in PLANT JOURNAL

Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes

Steven B CannonLieven SterckStephane RombautsShusei SatoFoo CheungJérôme GouzyXiaohong WangJoann MudgeJayprakash VasdewaniThomas Schiex et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)

GA TuskanS DiFazioS JanssonJ BohlmannI GrigorievU HellstenN PutnamS RalphStephane RombautsA Salamov et al.

A1 Journal Article in SCIENCE

2005

EST data suggest that poplar is an ancient polyploid

Lieven SterckStephane RombautsStefan JanssonFredrik SterkyPierre RouzéYves Van de Peer

A1 Journal Article in NEW PHYTOLOGIST