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Researcher
Klaas Vandepoele
Profile
Projects
Publications
Activities
174
Results
2022
Charting plant gene functions in the multi-omics and single-cell era
Thomas Depuydt
Bert De Rybel
Klaas Vandepoele
U
Journal Article
in
Trends in Plant Science
2022
Chromosome-scale assembly and annotation of the perennial ryegrass genome
Elisabeth Veeckman
Chang Liu
Michiel Van Bel
Klaas Vandepoele
Tom Ruttink
A1
Journal Article
in
BMC GENOMICS
2022
Identification of growth regulators using cross-species network analysis in plants
Pasquale Luca Curci
Jie Zhang
Carolin Seyfferth
Tim Diels
Tom Van Hautegem
Dirk Inzé
Hilde Nelissen
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2022
Inherited memories : the role of epigenetics in intergenerational resistance against nematodes in rice
Aniko Meijer
Tina Kyndt
Klaas Vandepoele
Dissertation
2022
JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2022
MINI-EX: Integrative inference of single-cell gene regulatory networks in plants
Camilla Ferrari
Nicolás Manosalva Pérez
Klaas Vandepoele
U
Journal Article
in
Molecular Plant
2022
PLAZA 5.0 : extending the scope and power of comparative and functional genomics in plants
Francesca Silvestri
Alexander Botzki
Frederik Coppens
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2022
Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues
Aniko Meijer
Tim De Meyer
Klaas Vandepoele
Tina Kyndt
A1
Journal Article
in
BMC GENOMICS
2022
The gene regulation knowledge commons : the action area of GREEKC
Klaas Vandepoele
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS
2022
The quest for orthologs Orthology Benchmark Service in 2022
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2022
The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization
Klaas Vandepoele
U
Journal Article
in
Frontiers in Plant Science
2022
2021
A network-based comparative framework to study conservation and divergence of proteomes in plant phylogenies
Dries Vaneechoutte
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2021
Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass
Elisabeth Veeckman
Klaas Vandepoele
Isabel Roldán-Ruiz
A1
Journal Article
in
MOLECULAR ECOLOGY RESOURCES
2021
Chromatin accessibility landscapes activated by cell-surface and intracellular immune receptors
Nicolás Manosalva Pérez
Klaas Vandepoele
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2021
Comment on ‘Hayai-annotation plants : an ultrafast and comprehensive functional gene annotation system in plants’ : the importance of taking the GO graph structure into account
Michiel Van Bel
Klaas Vandepoele
A1
Journal Article
in
BIOINFORMATICS
2021
Comparative genomics reveals new functional insights in uncultured MAST species
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
ISME JOURNAL
2021
Diurnal transcript profiling of the diatom Seminavis robusta reveals adaptations to a benthic lifestyle
Gust Bilcke
Cristina Maria Osuna Cruz
Sofie D'hondt
Petra Bulánková
Wim Vyverman
Lieven De Veylder
Klaas Vandepoele
A1
Journal Article
in
PLANT JOURNAL
2021
Evolutionary genomics of sex-related chromosomes at the base of the green lineage
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
GENOME BIOLOGY AND EVOLUTION
2021
Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
ISME JOURNAL
2021
Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators
Inge De Clercq
Jan Van de Velde
Xiaopeng Luo
Li Liu
Veronique Storme
Michiel Van Bel
Robin Pottie
Dries Vaneechoutte
Frank Van Breusegem
Klaas Vandepoele
A1
Journal Article
in
NATURE PLANTS
2021
Light intensity and spectral composition drive reproductive success in the marine benthic diatom Seminavis robusta
Gust Bilcke
Lore Van Craenenbroeck
Alexandre Castagna Mourão e Lima
Cristina Maria Osuna Cruz
Klaas Vandepoele
Koen Sabbe
Lieven De Veylder
Wim Vyverman
A1
Journal Article
in
SCIENTIFIC REPORTS
2021
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta
Gust Bilcke
Koen Van den Berge
Sam De Decker
Eli Bonneure
Petra Bulánková
Cristina Maria Osuna Cruz
Koen Sabbe
Klaas Vandepoele
Sven Mangelinckx
Lieven Clement
Lieven De Veylder
Wim Vyverman
A1
Journal Article
in
ISME JOURNAL
2021
Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms
Petra Bulánková
Mirna Sekulić
Ilse Vercauteren
Cristina Maria Osuna Cruz
Emmelien Vancaester
Koen Sabbe
Wim Vyverman
Klaas Vandepoele
Lieven De Veylder
A1
Journal Article
in
CURRENT BIOLOGY
2021
Multi‐omics network‐based functional annotation of unknown Arabidopsis genes
Thomas Depuydt
Klaas Vandepoele
A1
Journal Article
in
PLANT JOURNAL
2021
Subfunctionalization of paralog transcription factors contributes to regulation of alkaloid pathway branch choice in Catharanthus roseus
Maite Colinas Martinez
Jacob Pollier
Dries Vaneechoutte
Fabian Schweizer
Liesbeth De Milde
Rebecca De Clercq
Klaas Vandepoele
Alain Goossens
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2021
TRAPID 2.0 : a web application for taxonomic and functional analysis of de novo transcriptomes
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2021
Understanding benthic diatom biology through comparative genomics and trancriptomic analysis of the model Seminavis robusta
Cristina Maria Osuna Cruz
Klaas Vandepoele
Lieven De Veylder
Dissertation
2021
2020
Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth
Jasmien Vercruysse
Michiel Van Bel
Cristina Maria Osuna Cruz
Shubhada Rajabhau Kulkarni
Hilde Nelissen
Nathalie Gonzalez Sanchez
Dirk Inzé
Klaas Vandepoele
A1
Journal Article
in
PLANT BIOTECHNOLOGY JOURNAL
2020
Comprehensive and functional analysis of horizontal gene transfer events in diatoms
Emmelien Vancaester
Thomas Depuydt
Cristina Maria Osuna Cruz
Klaas Vandepoele
A1
Journal Article
in
MOLECULAR BIOLOGY AND EVOLUTION
2020
Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds
Frederike Stock genannt Schroer
Gust Bilcke
Sam De Decker
Cristina Maria Osuna Cruz
Koen Van den Berge
Emmelien Vancaester
Lieven De Veylder
Klaas Vandepoele
Sven Mangelinckx
Wim Vyverman
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2020
Evolution of vascular plants through redeployment of ancient developmental regulators
Eliana Mor
Klaas Vandepoele
Bert De Rybel
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2020
Horizontal gene transfer and gene family evolution in photosynthetic unicellular eukaryotes
Emmelien Vancaester
Klaas Vandepoele
Dissertation
2020
Identification and evolution of gene regulatory networks : insights from comparative studies in plants
Marc Jones
Klaas Vandepoele
A1
Journal Article
in
CURRENT OPINION IN PLANT BIOLOGY
2020
Inference of plant gene regulatory networks using data-driven methods : a practical overview
Shubhada Rajabhau Kulkarni
Klaas Vandepoele
A1
Journal Article
in
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS
2020
Light regulation of LHCX genes in the benthic diatom Seminavis robusta
Lander Blommaert
Emmelien Vancaester
Marie Huysman
Cristina Maria Osuna Cruz
Sofie D'hondt
Klaas Vandepoele
Wim Vyverman
Koen Sabbe
A1
Journal Article
in
FRONTIERS IN MARINE SCIENCE
2020
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds
Andrea Del Cortona
François Bucchini
Michiel Van Bel
Sofie D'hondt
Klaas Vandepoele
Olivier De Clerck
Frédérik Leliaert
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2020
The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms
Cristina Maria Osuna Cruz
Gust Bilcke
Emmelien Vancaester
Sam De Decker
Petra Bulánková
Sien Audoor
Darja Belišová
Aikaterini Pargana
Frederike Stock genannt Schroer
Lieven Sterck
Koen Sabbe
Lieven De Veylder
Wim Vyverman
Klaas Vandepoele
A1
Journal Article
in
NATURE COMMUNICATIONS
2020
The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms (vol 11, 3320, 2020)
Gust Bilcke
Emmelien Vancaester
Sam De Decker
Petra Bulánková
Bram Verhelst
Sien Audoor
Darja Belišová
Aikaterini Pargana
Frederike Stock genannt Schroer
Lieven Sterck
Koen Sabbe
Lieven De Veylder
Wim Vyverman
Klaas Vandepoele
Correction
2020
The art in artificial promoters : searching for cis-regulatory elements to design and validate synthetic promoters
Jasmien Vercruysse
Dirk Inzé
Klaas Vandepoele
Dissertation
2020
Virus-host coexistence in phytoplankton through the genomic lens
Stephane Rombauts
Emmelien Vancaester
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
SCIENCE ADVANCES
2020
2019
A collection of tools and resources to explore gene expression, regulation, and alternative splicing
Dries Vaneechoutte
Klaas Vandepoele
Dissertation
2019
A new evolutionary model for the vertebrate actin family including two novel groups
Laura Witjes
Marleen Van Troys
Joël Vandekerckhove
Klaas Vandepoele
Christophe Ampe
A1
Journal Article
in
MOLECULAR PHYLOGENETICS AND EVOLUTION
2019
A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis
Jacob Pollier
Emmelien Vancaester
Klaas Vandepoele
Alain Goossens
Michele Fabris
A1
Journal Article
in
NATURE MICROBIOLOGY
2019
Associated bacteria affect sexual reproduction by altering gene expression and metabolic processes in a biofilm inhabiting diatom
Sam De Decker
Gust Bilcke
Cristina Maria Osuna Cruz
Lieven De Veylder
Klaas Vandepoele
Wim Vyverman
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2019
Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase
Jelle Van Leene
Chao Han
Astrid Gadeyne
Dominique Eeckhout
Caroline Matthijs
Bernard Cannoot
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Brigitte Van De Cotte
Elisabeth Stes
Michiel Van Bel
Veronique Storme
Francis Impens
Kris Gevaert
Klaas Vandepoele
Ive De Smet
Geert De Jaeger
A1
Journal Article
in
NATURE PLANTS
2019
Curse : building expression atlases and co-expression networks from public RNA-Seq data
Dries Vaneechoutte
Klaas Vandepoele
A1
Journal Article
in
BIOINFORMATICS
2019
Delineating gene regulatory networks in Arabidopsis thaliana
Shubhada Rajabhau Kulkarni
Klaas Vandepoele
Dissertation
2019
Development of genomic resources for perennial ryegrass
Elisabeth Veeckman
Klaas Vandepoele
Peter Dawyndt
Dissertation
2019
Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data
Shubhada Rajabhau Kulkarni
Marc Jones
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2019
Gene space completeness in complex plant genomes
Michiel Van Bel
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
CURRENT OPINION IN PLANT BIOLOGY
2019
Neofunctionalization of mitochondrial proteins and incorporation into signaling networks in plants
Dries Vaneechoutte
Klaas Vandepoele
Elke Vaeck
A1
Journal Article
in
MOLECULAR BIOLOGY AND EVOLUTION
2019
Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)
Elisabeth Veeckman
Isabel Roldán-Ruiz
Klaas Vandepoele
Tom Ruttink
A1
Journal Article
in
DNA RESEARCH
2019
Understanding genetic control of root system architecture in soybean : insights into the genetic basis of lateral root number
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2019
2018
Ensemble gene function prediction database reveals genes important for complex I formation in Arabidopsis thaliana
Sara Movahedi
Klaas Vandepoele
A1
Journal Article
in
NEW PHYTOLOGIST
2018
GSyellow, a multifaceted tag for functional protein analysis in monocot and dicot plants
Nienke Besbrugge
Jelle Van Leene
Dominique Eeckhout
Bernard Cannoot
Shubhada Rajabhau Kulkarni
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Michiel Bontinck
Stijn Aesaert
Francis Impens
Kris Gevaert
Daniël Van Damme
Maria Van Lijsebettens
Dirk Inzé
Klaas Vandepoele
Hilde Nelissen
Geert De Jaeger
A1
Journal Article
in
PLANT PHYSIOLOGY
2018
Gearing up to handle the mosaic nature of life in the quest for orthologs
Klaas Vandepoele
A1
Journal Article
in
BIOINFORMATICS
2018
Genome analyses of the microalga Picochlorum provide insights into the evolution of thermotolerance in the green lineage
Emmelien Vancaester
Stephane Rombauts
François Bucchini
Klaas Vandepoele
A1
Journal Article
in
GENOME BIOLOGY AND EVOLUTION
2018
Insights into the evolution of multicellularity from the sea lettuce genome
Olivier De Clerck
Shu-Min Kao
Kenny Bogaert
Jonas Blomme
Emmelien Vancaester
Lisa Vanderstraeten
Eylem Aydogdu Lohaus
Andrea Del Cortona
Frédérik Leliaert
Xiaojie Liu
Michiel Van Bel
Dominique Van Der Straeten
Lieven Sterck
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
CURRENT BIOLOGY
2018
JASPAR 2018 : update of the open-access database of transcription factor binding profiles and its web framework
Shubhada Rajabhau Kulkarni
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2018
KIRA1 and ORESARA1 terminate flower receptivity by promoting cell death in the stigma of Arabidopsis
Zhen Gao
Anna Daneva
Yuliya Salanenka
Matthias Van Durme
Marlies Huysmans
Zongcheng Lin
Freya De Winter
Steffen Vanneste
Mansour Karimi
Jan Van de Velde
Klaas Vandepoele
Davy Van de Walle
Koen Dewettinck
Bart Lambrecht
Moritz Nowack
A1
Journal Article
in
NATURE PLANTS
2018
PLAZA 4.0 : an integrative resource for functional, evolutionary and comparative plant genomics
Michiel Van Bel
Tim Diels
Emmelien Vancaester
Lukasz Kreft
Alexander Botzki
Yves Van de Peer
Frederik Coppens
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2018
TF2Network : predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information
Shubhada Rajabhau Kulkarni
Dries Vaneechoutte
Jan Van de Velde
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2018
The Physcomitrella patens chromosome-scale assembly reveals moss genome structure and evolution
Michiel Van Bel
Klaas Vandepoele
A1
Journal Article
in
PLANT JOURNAL
2018
The rise of Algae: molecular evolution of macroscopic growth in green algae
Andrea Del Cortona
Olivier De Clerck
Klaas Vandepoele
Frédérik Leliaert
Dissertation
2018
2017
A guide to the PLAZA 3.0 plant comparative genomic database
Klaas Vandepoele
Bookchapter
in
Plant genomics databases : methods and protocols
2017
Evolutionary relationships and expression analysis of EUL domain proteins in rice (Oryza sativa)
Kristof De Schutter
Mariya Tsankova Tsaneva
Shubhada Rajabhau Kulkarni
Klaas Vandepoele
Els Van Damme
A1
Journal Article
in
RICE
2017
Genome-wide characterization of differential transcript usage in Arabidopsis thaliana
Dries Vaneechoutte
Klaas Vandepoele
A1
Journal Article
in
PLANT JOURNAL
2017
Identifying drivers of sympatric speciation in the marine benthic diatom Seminavis robusta using metabolic analysis and whole-genome resequencing
Sam De Decker
Pieter Vanormelingen
Josefin Sefbom
Klaas Vandepoele
Koen Sabbe
Lieven De Veylder
Lieven Clement
Wim Vyverman
C3
Conference
2017
PhyD3 : a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization
Lukasz Kreft
Alexander Botzki
Frederik Coppens
Klaas Vandepoele
Michiel Van Bel
A1
Journal Article
in
BIOINFORMATICS
2017
Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules
Klaas Vandepoele
A1
Journal Article
in
PLANT JOURNAL
2017
Studying the regulatory landscape of flowering plants
Jan Van de Velde
Klaas Vandepoele
Jan Fostier
Dissertation
2017
The mutation nrpb1-A325V in the largest subunit of RNA polymerase II suppresses compromised growth of Arabidopsis plants deficient in a function of the general transcription factor IIF
Elena Babiychuk
Hoang Khai Trinh
Klaas Vandepoele
Eveline Van De Slijke
Danny Geelen
Geert De Jaeger
Sergei Kushnir
A1
Journal Article
in
PLANT JOURNAL
2017
The plastid genome in Cladophorales green algae is encoded by hairpin chromosomes
Andrea Del Cortona
Frédérik Leliaert
Kenny Bogaert
Klaas Vandepoele
Olivier De Clerck
A1
Journal Article
in
CURRENT BIOLOGY
2017
The transcription factor MYB29 is a regulator of ALTERNATIVE OXIDASE1a
Klaas Vandepoele
Jan Van de Velde
Patrick Willems
Elke Vaeck
Veronique Storme
Dries Vaneechoutte
Frank Van Breusegem
Inge De Clercq
A1
Journal Article
in
PLANT PHYSIOLOGY
2017
The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis
Andrés Ritter Traub
Sabrina Iñigo
Patricia Fernandez Calvo
Ken Heyndrickx
Stijn Dhondt
Liesbeth De Milde
Robin Vanden Bossche
Rebecca De Clercq
Dominique Eeckhout
Dirk Inzé
Kris Gevaert
Geert De Jaeger
Klaas Vandepoele
Laurens Pauwels
Alain Goossens
A1
Journal Article
in
NATURE COMMUNICATIONS
2017
2016
A collection of conserved noncoding sequences to study gene regulation in flowering plants
Jan Van de Velde
Michiel Van Bel
Dries Vaneechoutte
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2016
Are we there yet? : reliably estimating the completeness of plant genome sequences
Elisabeth Veeckman
Tom Ruttink
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL
2016
CoExpNetViz: comparative co-expression networks construction and visualization tool
Oren Tzfadia
Tim Diels
Sam De Meyer
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
FRONTIERS IN PLANT SCIENCE
2016
Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development
Jelle Van Leene
Jonas Blomme
Shubhada Rajabhau Kulkarni
Bernard Cannoot
Nancy De Winne
Dominique Eeckhout
Geert Persiau
Eveline Van De Slijke
Leen Vercruysse
Robin Vanden Bossche
Ken Heyndrickx
Steffen Vanneste
Alain Goossens
Kris Gevaert
Klaas Vandepoele
Nathalie Gonzalez Sanchez
Dirk Inzé
Geert De Jaeger
A1
Journal Article
in
JOURNAL OF EXPERIMENTAL BOTANY
2016
Genomic variation in the FT gene family of perennial ryegrass (Lolium perenne)
Elisabeth Veeckman
Klaas Vandepoele
Isabel Roldán-Ruiz
C1
Conference
2016
2015
A functional and regulatory perspective on Arabidopsis thaliana
Ken Heyndrickx
Klaas Vandepoele
Dissertation
2015
A repressor protein complex regulates leaf growth in Arabidopsis
Nathalie Gonzalez Sanchez
Laurens Pauwels
Alexandra Baekelandt
Liesbeth De Milde
Jelle Van Leene
Nienke Besbrugge
Ken Heyndrickx
Amparo Cuéllar Pérez
Astrid Nagels Durand
Rebecca De Clercq
Eveline Van De Slijke
Robin Vanden Bossche
Dominique Eeckhout
Kris Gevaert
Klaas Vandepoele
Geert De Jaeger
Alain Goossens
Dirk Inzé
A1
Journal Article
in
PLANT CELL
2015
An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes
Jelle Van Leene
Dominique Eeckhout
Bernard Cannoot
Nancy De Winne
Geert Persiau
Eveline Van De Slijke
Leen Vercruysse
Maarten Dedecker
Aurine Verkest
Klaas Vandepoele
Lennart Martens
Kris Gevaert
Geert De Jaeger
A1
Journal Article
in
NATURE PROTOCOLS
2015
An update on LNCipedia : a database for annotated human lncRNA sequences
Pieter-Jan Volders
Kenneth Verheggen
Gerben Menschaert
Klaas Vandepoele
Lennart Martens
Jo Vandesompele
Pieter Mestdagh
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
BLSSpeller : exhaustive comparative discovery of conserved cis-regulatory elements
Dieter De Witte
Jan Van de Velde
Dries Decap
Michiel Van Bel
Pieter Audenaert
Piet Demeester
Bart Dhoedt
Klaas Vandepoele
Jan Fostier
A1
Journal Article
in
BIOINFORMATICS
2015
Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf
Hilde Nelissen
Dominique Eeckhout
Kirin Demuynck
Geert Persiau
Alan Walton
Michiel Van Bel
Jasper Candaele
Jolien De Block
Stijn Aesaert
Maria Van Lijsebettens
Sofie Goormachtig
Klaas Vandepoele
Jelle Van Leene
Kris Gevaert
Dirk Inzé
Geert De Jaeger
A1
Journal Article
in
PLANT CELL
2015
Evolutionary trails of plant steroid genes
Klaas Vandepoele
Eugenia Russinova
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2015
Functional analysis of the Arabidopsis TETRASPANIN gene family in plant growth and development
Feng Wang
Jan Van de Velde
Pia Neyt
Kristiina Himanen
Klaas Vandepoele
Maria Van Lijsebettens
A1
Journal Article
in
PLANT PHYSIOLOGY
2015
PLAZA 3.0 : an access point for plant comparative genomics
Sebastian Proost
Michiel Van Bel
Dries Vaneechoutte
Yves Van de Peer
Dirk Inzé
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
Peptide-level robust ridge regression modeling improves both sensitivity and specificity in quantitative proteomics
Ludger Goeminne
Lieven Clement
Kris Gevaert
Klaas Vandepoele
C3
Conference
2015
Robust peptide-based models in quantitative proteomics
Ludger Goeminne
Klaas Vandepoele
Kris Gevaert
Lieven Clement
C3
Conference
2015
Selection for improved energy use efficiency and drought tolerance in canola results in distinct transcriptome and epigenome changes
Aurine Verkest
Marina Byzova
Cindy Martens
Patrick Willems
Tom Verwulgen
Bram Slabbinck
Debbie Rombaut
Jan Van de Velde
Klaas Vandepoele
Maria Van Lijsebettens
Frank Van Breusegem
A1
Journal Article
in
PLANT PHYSIOLOGY
2015
Small-scale gene duplications played a major role in the recent evolution of wheat chromosome 3B
Klaas Vandepoele
A1
Journal Article
in
GENOME BIOLOGY
2015
Towards an understanding of the cytological diversity of green seaweeds (Ulvophyceae)
Frédérik Leliaert
Heroen Verbruggen
Klaas Vandepoele
Olivier De Clerck
C3
Conference
2015
2014
A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana
Jan Van de Velde
Ken Heyndrickx
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2014
A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana
Ken Heyndrickx
Jan Van de Velde
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL
2014
A generic tool for transcription factor target gene discovery in Arabidopsis cell suspension cultures based on tandem chromatin affinity purification
Aurine Verkest
Thomas Abeel
Ken Heyndrickx
Jelle Van Leene
Eveline Van De Slijke
Nancy De Winne
Dominique Eeckhout
Geert Persiau
Frank Van Breusegem
Dirk Inzé
Klaas Vandepoele
Geert De Jaeger
A1
Journal Article
in
PLANT PHYSIOLOGY
2014
A parallel, distributed-memory framework for comparative motif discovery
Dieter De Witte
Michiel Van Bel
Pieter Audenaert
Piet Demeester
Bart Dhoedt
Klaas Vandepoele
Jan Fostier
P1
Conference
2014
ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development
Liesbeth Vercruyssen
Aurine Verkest
Nathalie Gonzalez Sanchez
Ken Heyndrickx
Dominique Eeckhout
Jelle Van Leene
Megan Andriankaja
Stefanie De Bodt
Thomas Abeel
Frederik Coppens
Stijn Dhondt
Liesbeth De Milde
Mattias Vermeersch
Katrien Maleux
Kris Gevaert
Klaas Vandepoele
Geert De Jaeger
Dirk Inzé
A1
Journal Article
in
PLANT CELL
2014
Big data and other challenges in the quest for orthologs
Michiel Van Bel
Klaas Vandepoele
Editorial material
2014
Drought tolerance conferred to sugarcane by association with Gluconacetobacter diazotrophicus: a transcriptomic view of hormone pathways
Dries Vaneechoutte
Michiel Van Bel
Klaas Vandepoele
A1
Journal Article
in
PLOS ONE
2014
Inference of transcriptional networks in Arabidopsis through conserved noncoding sequence analysis
Jan Van de Velde
Ken Heyndrickx
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL
2014
MAGIC: access portal to a cross-platform gene expression compendium for maize
Ana Carolina Elisa Fierro Gutierrez
Aminael Sanchez Rodriguez
Klaas Vandepoele
Kathleen Marchal
A1
Journal Article
in
BIOINFORMATICS
2014
SHUGOSHINs and PATRONUS protect meiotic centromere cohesion in Arabidopsis thaliana
Linda Zamariola
Nico De Storme
Katrijn Vannerum
Klaas Vandepoele
Danny Geelen
A1
Journal Article
in
PLANT JOURNAL
2014
Structural and functional partitioning of bread wheat chromosome 3B
Klaas Vandepoele
A1
Journal Article
in
SCIENCE
2014
2013
Comparative motif discovery in the cloud
Dieter De Witte
Jan Van de Velde
Michiel Van Bel
Pieter Audenaert
Piet Demeester
Bart Dhoedt
Klaas Vandepoele
Jan Fostier
C3
Conference
2013
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants
Riet De Smet
Klaas Vandepoele
Marc Van Montagu
Steven Maere
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2013
ERF115 controls root quiescent center cell division and stem cell replenishment
Jefri Heyman
Toon Cools
Filip Vandenbussche
Ken Heyndrickx
Jelle Van Leene
Ilse Vercauteren
Sandy Vanderauwera
Klaas Vandepoele
Geert De Jaeger
Dominique Van Der Straeten
Lieven De Veylder
A1
Journal Article
in
SCIENCE
2013
Molecular and physiological analysis of growth-limiting drought stress in Brachypodium distachyon leaves
Wim Verelst
Stefanie De Bodt
Klaas Vandepoele
Marlies Demeulenaere
Dirk Inzé
A1
Journal Article
in
MOLECULAR PLANT
2013
TRAPID : an efficient online tool for the functional and comparative analysis of de novo RNA-Seq transcriptomes
Michiel Van Bel
Christophe Van Neste
Dieter Deforce
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
GENOME BIOLOGY
2013
The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis
Inge De Clercq
Vanessa Vermeirssen
Elke Vaeck
Klaas Vandepoele
Annelies Inzé
Debbie Rombaut
Brigitte Van De Cotte
Yves Van de Peer
Frank Van Breusegem
A1
Journal Article
in
PLANT CELL
2013
pico-PLAZA, a genome database of microbial photosynthetic eukaryotes
Klaas Vandepoele
Michiel Van Bel
Sofie Van Landeghem
Bram Verhelst
Yves Van de Peer
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2013
2012
A high performance computing approach to the dicovery of conserved motifs
Dieter De Witte
Michiel Van Bel
Piet Demeester
Bart Dhoedt
Klaas Vandepoele
Jan Fostier
C3
Conference
2012
Alignment-free genome-wide comparative motif discovery in 4 Monocot species
Dieter De Witte
Michiel Van Bel
Piet Demeester
Bart Dhoedt
Klaas Vandepoele
Jan Fostier
C3
Conference
2012
Comparative analysis of plant genomes through data integration
Michiel Van Bel
Yves Van de Peer
Klaas Vandepoele
Dissertation
2012
Comparative co-expression analysis in plant biology
Sara Movahedi
Michiel Van Bel
Ken Heyndrickx
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL AND ENVIRONMENT
2012
Comparative transcriptomics in plants
Sara Movahedi
Yves Van de Peer
Klaas Vandepoele
Dissertation
2012
Dissecting plant genomes with the PLAZA comparative genomics platform
Michiel Van Bel
Sebastian Proost
Elisabeth Wischnitzki
Sara Movahedi
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2012
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage
Bram Verhelst
Stephane Rombauts
Michiel Van Bel
Pierre Rouzé
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
GENOME BIOLOGY
2012
Identification of cis-regulatory elements specific for different types of reactive oxygen species in Arabidopsis thaliana
Vanessa Vermeirssen
Inge De Clercq
Frank Van Breusegem
Klaas Vandepoele
A1
Journal Article
in
GENE
2012
Identification of putative cancer genes through data integration and comparative genomics between plants and humans
Mauricio Quimbaya Gomez
Klaas Vandepoele
Eric Raspé
Michiel Matthijs
Stijn Dhondt
Gerrit Beemster
Geert Berx
Lieven De Veylder
A1
Journal Article
in
CELLULAR AND MOLECULAR LIFE SCIENCES
2012
Integration of genomic data to study genome evolution in plants
Sebastian Proost
Yves Van de Peer
Klaas Vandepoele
Dissertation
2012
Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling
Klaas Vandepoele
A1
Journal Article
in
PLOS ONE
2012
Systematic identification of functional plant modules through the integration of complementary data sources
Ken Heyndrickx
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2012
Tetraspanin genes in plants
Feng Wang
Klaas Vandepoele
Maria Van Lijsebettens
A1
Journal Article
in
PLANT SCIENCE
2012
Toward community standards in the quest for orthologs
Klaas Vandepoele
Michiel Van Bel
A1
Journal Article
in
BIOINFORMATICS
2012
i-ADHoRe 3.0 : fast and sensitive detection of genomic homology in extremely large data sets
Sebastian Proost
Jan Fostier
Dieter De Witte
Bart Dhoedt
Piet Demeester
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2012
2011
A greedy, graph-based algorithm for the alignment of multiple homologous gene lists
Jan Fostier
Sebastian Proost
Bart Dhoedt
Yvan Saeys
Piet Demeester
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
BIOINFORMATICS
2011
Comparative network analysis reveals that tissue specificity and gene function are important factors influencing the mode of expression evolution in Arabidopsis and rice
Sara Movahedi
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
PLANT PHYSIOLOGY
2011
Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family
Elena Babiychuk
Klaas Vandepoele
Riet De Rycke
Jérôme Joubes
Tom Beeckman
Marc Van Montagu
Sergei Kushnir
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2011
ROS signaling: the new wave?
Sandy Vanderauwera
Vanesa Tognetti
Klaas Vandepoele
Frank Van Breusegem
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2011
2010
Genome-wide analysis of the diatom cell cycle unveils a novel type of cyclins involved in environmental signaling
Marie Huysman
Cindy Martens
Klaas Vandepoele
Jeroen Gillard
Marc Heijde
Dirk Inzé
Yves Van de Peer
Lieven De Veylder
Wim Vyverman
A1
Journal Article
in
GENOME BIOLOGY
2010
The MCM-Binding Protein ETG1 Aids Sister Chromatid Cohesion Required for Postreplicative Homologous Recombination Repair
Naoki Takahashi
Mauricio Quimbaya Gomez
Tim Lammens
Klaas Vandepoele
Dirk Inzé
Geert Berx
Lieven De Veylder
A1
Journal Article
in
PLOS GENETICS
2010
2009
PLAZA : a comparative genomics resource to study gene and genome evolution in plants
Sebastian Proost
Michiel Van Bel
Lieven Sterck
Kenny Billiau
Thomas Van Parys
Yves Van de Peer
Klaas Vandepoele
A1
Journal Article
in
PLANT CELL
2009
Predicting protein-protein interactions in Arabidopsis thaliana through integration of orthology, gene ontology and co-expression
Stefanie De Bodt
Sebastian Proost
Klaas Vandepoele
Pierre Rouzé
Yves Van de Peer
A1
Journal Article
in
BMC Genomics
2009
Quantitative RNA expression analysis with Affymetrix Tiling 1.0R arrays identifies new E2F target genes
Naïra Naouar
Klaas Vandepoele
Tim Lammens
Dirk Inzé
Lieven De Veylder
Marnik Vuylsteke
A1
Journal Article
in
Plant Journal
2009
The Mouse Thymosin Beta15 Gene Family Displays Unique Complexity and Encodes A Functional Thymosin Repeat
Stien Dhaese
Klaas Vandepoele
Davy Waterschoot
Berlinda Vanloo
Joël Vandekerckhove
Christophe Ampe
Marleen Van Troys
A1
Journal Article
in
JOURNAL OF MOLECULAR BIOLOGY
2009
The flowering world: a tale of duplications
Yves Van de Peer
Jeffrey Fawcett
Sebastian Proost
Lieven Sterck
Klaas Vandepoele
A1
Journal Article
in
TRENDS IN PLANT SCIENCE
2009
Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks
Klaas Vandepoele
Mauricio Quimbaya Gomez
Lieven De Veylder
Yves Van de Peer
A1
Journal Article
in
Plant Physiology
2009
Unravelling cis-Regulatory Elements in the Genome of the Smallest Photosynthetic Eukaryote: Phylogenetic Footprinting in Ostreococcus
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
Journal of Molecular Evolution
2009
2008
A constitutional translocation t(1;17)(p36.2;q11.2) in a neuroblastoma patient disrupts the the human NBPF1 and ACCN1 genes
Frans Van Roy
Klaas Vandepoele
Nadine Van Roy
Vanessa Andries
Katrien Staes
Jo Vandesompele
Genevieve Laureys
Els De Smet
Geert Berx
Franki Speleman
C3
Conference
2008
Hydrogen peroxide-induced gene expression across kingdoms: a comparative analysis
Korneel Vandenbroucke
Steven Robbens
Klaas Vandepoele
Dirk Inzé
Yves Van de Peer
Frank Van Breusegem
A1
Journal Article
in
MOLECULAR BIOLOGY AND EVOLUTION
2008
The PRA1 gene family in Arabidopsis
Claire Lessa Alvim Kamei
Joanna Boruc
Klaas Vandepoele
Hilde Van Den Daele
Sara Maes
Eugenia Russinova
Dirk Inzé
Lieven De Veylder
A1
Journal Article
in
PLANT PHYSIOLOGY
2008
The Phaeodactylum genome reveals the evolutionary history of diatom genomes
Cindy Martens
Klaas Vandepoele
Marc Heijde
Marie Huysman
Wim Vyverman
Yves Van de Peer
A1
Journal Article
in
NATURE
2008
Whole-genome analysis reveals molecular innovations and evolutionary transitions in chromalveolate species
Cindy Martens
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2008
2007
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
Jeffrey Fawcett
Lieven Sterck
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
PLOS ONE
2007
Cold nights impair leaf growth and cell cycle progression in maize through transcriptional changes of cell cycle genes
Bart Rymen
Fabio Fiorani
Klaas Vandepoele
Dirk Inzé
Gerrit Beemster
A1
Journal Article
in
PLANT PHYSIOLOGY
2007
How many genes are there in plants (... and why are they there)?
Lieven Sterck
Stephane Rombauts
Klaas Vandepoele
Pierre Rouzé
Yves Van de Peer
A1
Journal Article
in
CURRENT OPINION IN PLANT BIOLOGY
2007
Novel plant-specific cyclin-dependent kinase inhibitors induced by biotic and abiotic stresses
Srivaidehirani Hariharan
Kristiina Himanen
Aurine Verkest
Klaas Vandepoele
Zoltan Magyar
Els Van Der Schueren
Gerrit Beemster
Dirk Inzé
Lieven De Veylder
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2007
On the origin and evolution of vertebrate and viral profilins
Anja Lambrechts
Klaas Vandepoele
Joël Vandekerckhove
Christophe Ampe
A1
Journal Article
in
FEBS LETTERS
2007
2006
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
Klaas Vandepoele
Tineke Casneuf
Yves Van de Peer
A1
Journal Article
in
GENOME BIOLOGY
2006
The gain and loss of genes during 600 million years of vertebrate evolution
Tine Blomme
Klaas Vandepoele
Stefanie De Bodt
Cedric Simillion
Steven Maere
Yves Van de Peer
A1
Journal Article
in
GENOME BIOLOGY
2006
2005
Ancient duplication of cereal genomes
Yves Van de Peer
Klaas Vandepoele
Editorial material
2005
Exploring the plant transcriptome through phylogenetic profiling
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
PLANT PHYSIOLOGY
2005
Genome-wide identification of potential plant E2F target genes
Klaas Vandepoele
Kobe Vlieghe
Kobe Florquin
Gerrit Beemster
Yves Van de Peer
Dirk Inzé
Lieven De Veylder
A1
Journal Article
in
PLANT PHYSIOLOGY
2005
Mode and tempo of gene and genome evolution in plants
Klaas Vandepoele
Yves Van de Peer
Dissertation
2005
2004
A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana
Lieven De Veylder
Klaas Vandepoele
Marc Van Montagu
Dirk Inzé
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2004
Building genomic profiles for uncovering segmental homology in the twilight zone
Cedric Simillion
Klaas Vandepoele
Yvan Saeys
Yves Van de Peer
A1
Journal Article
in
GENOME RESEARCH
2004
Building genomic profiles for uncovering segmental homology in the twilight zone
Cedric Simillion
Klaas Vandepoele
Yvan Saeys
Yves Van de Peer
C3
Conference
2004
Gene duplication and biased functional retention of paralogs in bacterial genomes
Dirk Gevers
Klaas Vandepoele
Cedric Simillion
Yves Van de Peer
A1
Journal Article
in
TRENDS IN MICROBIOLOGY
2004
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
Klaas Vandepoele
Wouter De Vos
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2004
Recent developments in computational approaches for uncovering genomic homology
Cedric Simillion
Klaas Vandepoele
Yves Van de Peer
A1
Journal Article
in
BIOESSAYS
2004
The quest for genomic homology
Klaas Vandepoele
Cedric Simillion
Yves Van de Peer
A2
Journal Article
in
CURRENT GENOMICS
2004
Type II metacaspases Atmc4 and Atmc9 of Arabidopsis thaliana cleave substrates after arginine and lysine
Dominique Vercammen
Brigitte Van De Cotte
Geert De Jaeger
Dominique Eeckhout
Peter Casteels
Klaas Vandepoele
Isabel Vandenberghe
Jozef Van Beeumen
Dirk Inzé
Frank Van Breusegem
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2004
2003
Evidence that rice and other cereals are ancient aneuploids
Klaas Vandepoele
Cedric Simillion
Yves Van de Peer
A1
Journal Article
in
PLANT CELL
2003
Investigating ancient duplication events in the Arabidopsis genome
Jeroen Raes
Klaas Vandepoele
Cedric Simillion
Yvan Saeys
Yves Van de Peer
Bookchapter
in
Genome evolution : gene and genome duplications and the origin of novel gene functions
2003
Investigating ancient duplication events in the Arabidopsis genome
Jeroen Raes
Klaas Vandepoele
Cedric Simillion
Yvan Saeys
Yves Van de Peer
A2
Journal Article
in
JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS
2003
Quantitative cDNA-AFLP analysis for genome-wide expression studies
Peter Breyne
Rozemarijn Dreesen
Bernard Cannoot
Debbie Rombaut
Klaas Vandepoele
Stephane Rombauts
Rudy Vanderhaeghen
Dirk Inzé
Marc Zabeau
A1
Journal Article
in
MOLECULAR GENETICS AND GENOMICS
2003
2002
Detecting microcolinearity between Arabidopsis and Rice
Klaas Vandepoele
Yvan Saeys
Cedric Simillion
Yves Van de Peer
C1
Conference
2002
Detecting the undetectable : uncovering duplicated segments in Arabidopsis by comparison with rice.
Klaas Vandepoele
Cedric Simillion
Yves Van de Peer
A1
Journal Article
in
TRENDS IN GENETICS
2002
Genome-wide analysis of core cell cycle genes in Arabidopsis
Klaas Vandepoele
Jeroen Raes
Lieven De Veylder
Pierre Rouzé
Stephane Rombauts
Dirk Inzé
A1
Journal Article
in
PLANT CELL
2002
The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice
Klaas Vandepoele
Yvan Saeys
Cedric Simillion
Jeroen Raes
Yves Van de Peer
A1
Journal Article
in
GENOME RESEARCH
2002
The hidden duplication past of Arabidopsis thaliana
Cedric Simillion
Klaas Vandepoele
Marc Van Montagu
Marc Zabeau
Yves Van de Peer
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2002
Transcriptome analysis during cell division in plants
Peter Breyne
Rozemarijn Dreesen
Klaas Vandepoele
Lieven De Veylder
Frank Van Breusegem
Lindy Callewaert
Stephane Rombauts
Jeroen Raes
Bernard Cannoot
Gilbert Engler
Dirk Inzé
Marc Zabeau
A1
Journal Article
in
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
2002