Research Explorer

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Researcher

Kimberly Verniers

25 Results

2023

RNA Extraction Method Impacts Quality Metrics and Sequencing Results in Formalin-Fixed, Paraffin-Embedded Tissue Samples

Philippe DecruyenaereKimberly VerniersFranco Alexander Poma SotoJo Van DorpeFritz OffnerJo Vandesompele

U Journal Article in Laboratory Investigation

2022

A 3′‐end capture sequencing method for high‐throughput targeted gene expression profiling

Eric de Bony de LavergneFien GysensNurten YigitJasper AnckaertCeline EveraertEveline Vanden EyndeKimberly VerniersWillem van SnippenbergWim TrypsteenPieter Mestdagh

A1 Journal Article in BIOTECHNOLOGY JOURNAL

Blocking unwanted sequences by target specific high-affinity binding oligonucleotides during transcriptome library preparation

Celine EveraertJasper VerwiltKimberly VerniersNiels VandammeAlvaro Marcos RubioJo VandesompelePieter Mestdagh

Digital PCR-based evaluation of nucleic acid extraction kit performance for the co-purification of cell-free DNA and RNA

Jill DeleuKathleen SchoofsAnneleen DecockKimberly VerniersSofie RoelandtAngie DenolfJoke VerrethBram De WildeTom Van MaerkenKatleen De PreterJo Vandesompele

A1 Journal Article in HUMAN GENOMICS

RNA biomarkers from proximal liquid biopsy for diagnosis of ovarian cancer

Eva HulstaertAnnelien MorlionJasper AnckaertKimberly VerniersJo VandesompelePieter Mestdagh

A1 Journal Article in NEOPLASIA

Whole transcriptome profiling of liquid biopsies from tumour xenografted mouse models enables specific monitoring of tumour-derived extracellular RNA

Vanessa VermeirssenJill DeleuAnnelien MorlionCeline EveraertJilke De WildeJasper AnckaertKaat DurinckJustine NuytensMuhammad RishfiFranki SpelemanHanne Van DroogenbroeckKimberly VerniersTom Van MaerkenBram De WildeJo VandesompeleAnneleen Decock

A2 Journal Article in NAR CANCER

mRNA capture sequencing and RT-qPCR for the detection of pathognomonic, novel, and secondary fusion transcripts in FFPE tissue : a sarcoma showcase

Anneleen DecockDavid CreytensSteve LefeverJoni Van der MeulenJasper AnckaertJill DeleuBram De WildeIsabelle RottiersKatrien VanderheydenEveline Vanden EyndeKimberly VerniersJo Van DorpeJo Vandesompele

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2021

Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls

Eva HulstaertAnneleen DecockAnnelien MorlionCeline EveraertKimberly VerniersJustine NuytensPieter MestdaghJo Vandesompele

A2 Journal Article in STAR PROTOCOLS

Validation of circular RNAs using RT‐qPCR after effective removal of linear RNAs by ribonuclease R

Marieke VrommanNurten YigitKimberly VerniersSteve LefeverJo VandesompelePieter-Jan Volders

A2 Journal Article in CURRENT PROTOCOLS

2020

Charting extracellular transcriptomes in the human biofluid RNA atlas

Eva HulstaertAnnelien MorlionFrancisco Avila CobosKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPieter HindryckxPeggy JacquesGuy BrusselleKen BrackeTania MaesVirginie NinclausCaroline Van CauwenberghKristien RoelensEllen RoetsDimitri HemelsoetKelly TillemanLieve BrochezSteve LefeverJo VandesompelePieter Mestdagh

A1 Journal Article in CELL REPORTS

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies

Anneleen DecockJasper AnckaertCeline EveraertJustine NuytensAn HendrixJo VandesompelePieter MestdaghBert DhondtRuben Van PaemelKimberly VerniersNurten YigitKathleen SchoofsAnnelien MorlionJill DeleuEva HulstaertFrancisco Avila CobosEveline Vanden EyndeHetty HelsmoortelOlivier De WeverAnnouck Philippron

2019

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Dramatic differences in RNA purification kit performance in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Evaluating the impact of RNA purification kit and blood collection tube in the extracellular RNA quality control study : important considerations for liquid biopsies

Annelien MorlionJasper AnckaertFrancisco Avila CobosAnneleen DecockJill DeleuOlivier De WeverBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghJustine NuytensAnnouck PhilippronKathleen SchoofsEveline Vanden EyndeJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

Celine EveraertHetty HelsmoortelAnneleen DecockEva HulstaertRuben Van PaemelKimberly VerniersJustine NuytensJasper AnckaertNele NijsJoeri TulkensBert DhondtAn HendrixPieter MestdaghJo Vandesompele

A1 Journal Article in SCIENTIFIC REPORTS

The human biofluid RNA atlas : expanding the liquid biopsy field beyond the blood stream

Eva HulstaertKimberly VerniersJustine NuytensEveline Vanden EyndeNurten YigitJasper AnckaertAnja GeertsPeggy JacquesGuy BrusselleVirginie NinclausCaroline Van CauwenberghKristien RoelensEllen RoetsPaul RamaekersDimitri HemelsoetPieter HindryckxJo VandesompelePieter Mestdagh

2018

Fusion gene detection and variant calling in formalin-fixed paraffin-embedded tumor tissue using mRNA capture sequencing

Anneleen DecockDavid CreytensJoni Van der MeulenKimberly VerniersKatrien VanderheydenIsabelle RottiersJo Van DorpeJo Vandesompele

The extracellular RNA quality control (exRNAQC) study : controlling pre-analytical variables of RNA sequencing in blood-based precision medicine

Francisco Avila CobosAnneleen DecockKatleen De PreterOlivier De WeverBram De WildeBert DhondtCeline EveraertHetty HelsmoortelAn HendrixEva HulstaertPieter MestdaghNele NijsAnnouck PhilippronJo VandesompeleRuben Van PaemelKimberly VerniersNurten Yigit

2017

The extracellular RNA quality control (exRNAQC) study : testing and controlling pre-analytical variables of RNA sequencing on liquid biopsies

Anneleen DecockOlivier De WeverBert DhondtThibaut D'huyvetterHetty HelsmoortelAn HendrixAnnouck PhilippronKimberly VerniersPieter MestdaghJo Vandesompele

2016

LncRNAs in the context of Chronic Obstructive Pulmonary Disease (COPD) are associated to immune response and metabolism of xenobiotics

Francisco Avila CobosKen BrackeJo VandesompeleKimberly VerniersGuy JoosKatleen De PreterGuy BrussellePieter Mestdagh

Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma

Anneleen DecockMaté OngenaertRobrecht CannoodtKimberly VerniersBram De WildeGenevieve LaureysNadine Van RoyKatleen De PreterFranki SpelemanJo Vandesompele

Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma

Anneleen DecockMaté OngenaertRobrecht CannoodtKimberly VerniersBram De WildeGenevieve LaureysNadine Van RoyKatleen De PreterFranki SpelemanJo Vandesompele

A1 Journal Article in ONCOTARGET

Targeted resequencing and variant validation using pxlence PCR assays

Frauke CoppietersKimberly VerniersKim De LeeneerJo VandesompeleSteve Lefever

A2 Journal Article in BIOMOLECULAR DETECTION AND QUANTIFICATION

2015

Methyl-CpG-binding domain sequencing reveals a prognostic methylation signature in neuroblastoma

Anneleen DecockMaté OngenaertRobrecht CannoodtKimberly VerniersBram De WildeGenevieve LaureysNadine Van RoyKatleen De PreterFranki SpelemanJo Vandesompele