Research Explorer

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Researcher

Kenny Helsens

Awards & Distinctions

36 Results

2013

LNCipedia 2.0: a database for annotated human lncRNA transcript sequences and structures

Pieter-Jan VoldersKenny HelsensXiaowei WangLennart MartensKris GevaertJo VandesompelePieter Mestdagh

LNCipedia 2.0: a database for annotated human lncRNA transcript sequences and structures

Pieter-Jan VoldersKenny HelsensXiaowei WangLennart MartensKris GevaertJo VandesompelePieter Mestdagh

LNCipedia : a database for annotated human lncRNA transcript sequences and structures

Pieter-Jan VoldersKenny HelsensXiaowei WangBjörn MentenLennart MartensKris GevaertJo VandesompelePieter Mestdagh

A1 Journal Article in NUCLEIC ACIDS RESEARCH

LNCipedia: a database for annotated human lncRNA transcript sequences and structures

Pieter-Jan VoldersKenny HelsensXiaowei WangLennart MartensKris GevaertJo VandesompelePieter Mestdagh

The Online Protein Processing Resource (TOPPR) : a database and analysis platform for protein processing events

Niklaas ColaertDavy MaddeleinFrancis ImpensPetra Van DammeKim PlasmanKenny HelsensNiels HulstaertJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2012

Enabling computational proteomics by public and local data management systems

Kenny HelsensLennart Martens

A1 Journal Article in CIRCULATION-CARDIOVASCULAR GENETICS

Lncipedia: a novel database for annotated lncRNA sequences and structures

Pieter-Jan VoldersKenny HelsensXiaowei WangLennart MartensKris GevaertJo VandesompelePieter Mestdagh

Sigpep: calculating unique peptide signature transition sets in a complete proteome background

Kenny HelsensMichael MuellerNiels HulstaertLennart Martens

A1 Journal Article in PROTEOMICS

TraML: a standard format for exchange of selected reaction monitoring transition lists

Eric W DeutschMatthew ChambersSteffen NeumannFredrik LevanderPierre-Alain BinzJim ShofstahlDavid S CampbellLuis MendozaDavid OvelleiroKenny Helsens et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2011

A stringent approach to improve the quality of nitrotyrosine peptide identifications

Bart GhesquièreKenny HelsensJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

Analysis of the resolution limitations of peptide identification algorithms

Niklaas ColaertSven DegroeveKenny HelsensLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation

Kenny HelsensPetra Van DammeSven DegroeveLennart MartensThomas ArnesenJoël VandekerckhoveKris Gevaert

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

N-Terminal combined fractional diagonal chromatographic (COFRADIC) analysis of the human platelet proteome

Francis ImpensKenny HelsensNiklaas ColaertLennart MartensJoël VandekerckhoveKris Gevaert

Bookchapter in Platelet proteomics : principles, analysis, and applications

NatF contributes to an evolutionary shift in protein N-terminal acetylation and is important for normal chromosome segregation

Petra Van DammeKristine HoleAna Pimenta-MarquesKenny HelsensJoël VandekerckhoveRui G MartinhoKris GevaertThomas Arnesen

A1 Journal Article in PLOS GENETICS

Probing the efficiency of proteolytic events by positional proteomics

Kim PlasmanPetra Van DammeDion KaisermanFrancis ImpensKimberly DemeyerKenny HelsensMarc GoethalsPhillip I BirdJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

compomics-utilities: an open-source Java library for computational proteomics

Harald BarsnesMarc VaudelNiklaas ColaertKenny HelsensAlbert SickmannFrode S BervenLennart Martens

A1 Journal Article in BMC BIOINFORMATICS

jTraML: an open source Java API for TraML, the PSI standard for sharing SRM transitions

Kenny HelsensMi-Youn BrusniakEric DeutschRobert L MoritzLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files

Niklaas ColaertHarald BarsnesMarc VaudelKenny HelsensEvy TimmermanAlbert SickmannKris GevaertLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2010

A quantitative proteomics design for systematic identification of protease cleavage events

Francis ImpensNiklaas ColaertKenny HelsensBart GhesquièreEvy TimmermanPieter-Jan De BockBenjamin M ChainJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Complementary positional proteomics for screening substrates of endo- and exoproteases

Petra Van DammeAn StaesSilvia BronsomsKenny HelsensNiklaas ColaertEvy TimmermanFrancesc X AvilesJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE METHODS

Increasing the specificity and the sensitivity in peptide centric proteomics

Kenny HelsensKris GevaertLennart Martens

MS-driven protease substrate degradomics

Francis ImpensNiklaas ColaertKenny HelsensKim PlasmanPetra Van DammeJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

Rover: a tool to visualize and validate quantitative proteomics data from different sources

Niklaas ColaertKenny HelsensFrancis ImpensJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

Kenny HelsensNiklaas ColaertHarald BarsnesThilo MuthKristian FlikkaAn StaesEvy TimmermanSteffi WortelkampAlbert SickmannJoël Vandekerckhove et al.

A1 Journal Article in PROTEOMICS

2009

Getting a grip on proteomics data: Proteomics Data Collection (ProDaC)

Martin EisenacherLennart MartensMichael KohlHarald BarsnesKenny HelsensJari HäkkinenFredrik LevanderRuedi AebersoldJoël VandekerckhoveMichael J. Dunn et al.

A1 Journal Article in PROTEOMICS

Improved visualization of protein consensus sequences by iceLogo

Niklaas ColaertKenny HelsensLennart MartensJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE METHODS

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

Bart GhesquièreNiklaas ColaertKenny HelsensLien DejagerCaroline VanhauteKatleen VerleysenKoen KasEvy TimmermanMarc GoethalsClaude Libert et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Proteome-wide substrate analysis indicates substrate exclusion as a mechanism to generate caspase-7 versus caspase-3 specificity

Dieter DemonPetra Van DammeTom Vanden BergheAnnelies DeceuninckJoost Van DurmeJelle VerspurtenKenny HelsensFrancis ImpensMagdalena WejdaJoost Schymkowitz et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Proteomics analyses reveal the evolutionary conservation and divergence of N-terminal acetyltransferases from yeast and humans

Thomas ArnesenPetra Van DammeBogdan PolevodaKenny HelsensRune EvjenthNiklaas ColaertJan Erik VarhaugJoël VandekerckhoveJohan LillehaugFred Sherman et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2008

Human Proteinpedia enables sharing of human protein data

Suresh MathivananMukhtar AhmedNatalie G AhnHainard AlexandreRamars AmanchyPhilip C AndrewsJoel S BaderBrian M BalgleyMarcus BantscheffKeiryn L Bennett et al.

A1 Journal Article in NATURE BIOTECHNOLOGY

Improved recovery of proteome-informative, protein N-terminal peptides by combined fractional diagonal chromatography (COFRADIC)

An StaesPetra Van DammeKenny HelsensHans DemolJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS

Peptizer: a tool for assessing false positive peptide identifications and manually validating selected results

Kenny HelsensEvy TimmermanJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2007

A la carte proteomics with an emphasis on gel-free techniques

Kris GevaertPetra Van DammeBart GhesquièreFrancis ImpensLennart MartensKenny HelsensJoël Vandekerckhove

A1 Journal Article in PROTEOMICS

Assessing a novel microfluidic interface for shotgun proteome analyses

An StaesEvy TimmermanI VAN DAMMEKenny HelsensJoël VandekerckhoveM VOLLMERKris Gevaert

A1 Journal Article in JOURNAL OF SEPARATION SCIENCE

Implementation and application of a versatile clustering tool for tandem mass spectrometry data

Kristian FlikkaJeroen MeukensKenny HelsensJoël VandekerckhoveIngvar EidhammerKris GevaertLennart Martens

A1 Journal Article in PROTEOMICS

MascotDatfile: an open-source library to fully parse and analyse MASCOT MS/MS search results

Kenny HelsensLennart MartensJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS