Research Explorer

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Researcher

Joris Vankerschaver

Publications & Research Data

Awards & Distinctions

50 Results

2026

Boosting 3D liver shape datasets with diffusion models and implicit neural representations

Khoa Tuan NguyenFrancesca TozziWouter WillaertJoris VankerschaverNiki RashidianWesley De Neve

Exact feature collisions in neural networks

Utku ÖzbulakShodhan RaoWesley De NeveJoris VankerschaverArnout Van MessemManvel Gasparyan

A1 Journal Article in SCIENTIFIC REPORTS

Improved sub-visible particle classification in flow imaging microscopy via generative AI-based image synthesis

Utku ÖzbulakMichaela CohrsHristo L. SvilenovJoris VankerschaverWesley De Neve

A1 Journal Article in JOURNAL OF PHARMACEUTICAL SCIENCES

Revisiting the evaluation bias introduced by frame sampling strategies in surgical video segmentation using SAM2

Utku ÖzbulakSeyed Amir MousaviFrancesca TozziNiki RashidianWouter WillaertWesley De NeveJoris Vankerschaver

SpurBreast : a curated dataset for investigating spurious correlations in real-world breast MRI classification

Jong Bum WonWesley De NeveJoris VankerschaverUtku Özbulak

Towards affordable tumor segmentation and visualization for 3D breast MRI using SAM2

Solha KangEugene KimJoris VankerschaverUtku Özbulak

2025

Towards improved cervical cancer screening : vision transformer-based classification and interpretability

Khoa Tuan NguyenHo-min ParkGaeun OhJoris VankerschaverWesley De Neve

2024

Assessing the reliability of point mutation as data augmentation for deep learning with genomic data

Hyunjung LeeUtku ÖzbulakHomin ParkStephen DepuydtWesley De NeveJoris Vankerschaver

A1 Journal Article in BMC BIOINFORMATICS

Assessment of intraoperative scoring systems for predicting cytoreduction outcome in peritoneal metastatic disease : a systematic review and meta-analysis

Francesca TozziRania MatthysAdris MolnarWim CeelenJoris VankerschaverNiki RashidianWouter Willaert

A1 Journal Article in ANNALS OF SURGICAL ONCOLOGY

Grasshopper optimization algorithm (GOA) : a novel algorithm or a variant of PSO?

Negin HarandiArnout Van MessemWesley De NeveJoris Vankerschaver

Identifying critical tokens for accurate predictions in transformer-based medical imaging models

Solha KangJoris VankerschaverUtku Özbulak

Self-supervised benchmark lottery on ImageNet : do marginal improvements translate to improvements on similar datasets?

Utku ÖzbulakEsla Timothy AnzakuSolha KangWesley De NeveJoris Vankerschaver

The influence of pH on the efficacy of oxidation-reduction potential (ORP) to predict chlorine disinfection of surrogate bacteria, Escherichia coli O157:H7 and Listeria monocytogenes in oxidant demand free conditions and fresh produce wash water

Kimberly GongoraJoris VankerschaverImca SampersSam Van Haute

A1 Journal Article in FOOD MICROBIOLOGY

Towards abdominal 3-D scene rendering from laparoscopy surgical videos using NeRFs

Khoa Tuan NguyenFrancesca TozziNiki RashidianWouter WillaertJoris VankerschaverWesley De Neve

2023

CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Homin ParkJong Bum WonYunseol ParkEsla Timothy AnzakuJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in BMC BIOINFORMATICS

How to make sense of 3D representations for plant phenotyping : a compendium of processing and analysis techniques

Negin HarandiBreght VandenbergheJoris VankerschaverStephen DepuydtArnout Van Messem

A1 Journal Article in PLANT METHODS

Know your self-supervised learning : a survey on image-based generative and discriminative training

Utku ÖzbulakHyun Jung LeeBeril BogaEsla Timothy AnzakuHomin ParkArnout Van MessemWesley De NeveJoris Vankerschaver

A2 Journal Article in TRANSACTIONS ON MACHINE LEARNING RESEARCH

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku ÖzbulakHyun Jung LeeJasper ZuallaertWesley De NeveStephen DepuydtJoris Vankerschaver

A1 Journal Article in BIOINFORMATICS

2022

Feedback integrators for mechanical systems with holonomic constraints

Dong Eui ChangMatthew PerlmutterJoris Vankerschaver

A1 Journal Article in SENSORS

In silico optimization of RNA-protein interactions for CRISPR-Cas13-based antimicrobials

Homin ParkYunseol ParkUrta BeraniEunkyu BangJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in BIOLOGY DIRECT

Rethinking protein drug design with highly accurate structure prediction of anti-CRISPR proteins

Homin ParkYunseol ParkJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in PHARMACEUTICALS

Utilizing mutations to evaluate interpretability of neural networks on genomic data

Utku ÖzbulakSolha KangJasper ZuallaertStephen DepuydtJoris Vankerschaver

VPsearch : fast exact sequence similarity search forgenomic sequences

Joris VankerschaverSteven J. KernRobert Kern

A2 Journal Article in JOURNAL OF OPEN SOURCE SOFTWARE

2014

A distance on curves modulo rigid transformations

Jaap ElderingJoris Vankerschaver

A1 Journal Article in DIFFERENTIAL GEOMETRY AND ITS APPLICATIONS

A novel formulation of point vortex dynamics on the sphere : geometrical and numerical aspects

Joris VankerschaverMelvin Leok

A1 Journal Article in JOURNAL OF NONLINEAR SCIENCE

Fluid-structure interaction in the Lagrange-Poincaré formalism : the Navier-Stokes and inviscid regimes

Henry JacobsJoris Vankerschaver

A1 Journal Article in JOURNAL OF GEOMETRIC MECHANICS

2013

Generating functionals and Lagrangian partial differential equations

Joris VankerschaverCuicui LiaoMelvin Leok

A1 Journal Article in JOURNAL OF MATHEMATICAL PHYSICS

Nonholonomic LL systems on central extensions and the hydrodynamic Chaplygin sleigh with circulation

Luis C. García-NaranjoJoris Vankerschaver

A1 Journal Article in JOURNAL OF GEOMETRY AND PHYSICS

Relative geodesics in the special Euclidean group

D. D. HolmL. NoakesJoris Vankerschaver

A1 Journal Article in PROCEEDINGS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES

The motion of the 2D hydrodynamic Chaplygin sleigh in the presence of circulation

Yuri N FedorovLuis C Garcia-NaranjoJoris Vankerschaver

A1 Journal Article in DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS

2012

The Hamilton-Pontryagin principle and multi-Dirac structures for classical field theories

Joris VankerschaverH YoshimuraM Leok

A1 Journal Article in JOURNAL OF MATHEMATICAL PHYSICS

2011

On the geometry of multi-Dirac structures and Gerstenhaber algebras

Joris VankerschaverHiroaki YoshimuraMelvin Leok

A1 Journal Article in JOURNAL OF GEOMETRY AND PHYSICS

Routh reduction by stages

Bavo LangerockTom MestdagJoris Vankerschaver

A1 Journal Article in SYMMETRY INTEGRABILITY AND GEOMETRY-METHODS AND APPLICATIONS

2010

Routhian reduction for quasi-invariant Lagrangians

Bavo LangerockFrans CantrijnJoris Vankerschaver

A1 Journal Article in JOURNAL OF MATHEMATICAL PHYSICS

Stokes-Dirac structures through reduction of infinite-dimensional Dirac structures

Joris VankerschaverHiroaki YoshimuraMelvin LeokJerrold E Marsden

The dynamics of a rigid body in potential flow with circulation

Joris VankerschaverE KansoJE Marsden

A1 Journal Article in REGULAR & CHAOTIC DYNAMICS

2009

Geometric control of particle manipulation in a two-dimensional fluid

Yizhar OrJoris VankerschaverScott D KellyRichard M MurrayJerrold E Marsden

The geometry and dynamics of interacting rigid bodies and point vortices

Joris VankerschaverEva KansoJerrold Marsden

A1 Journal Article in JOURNAL OF GEOMETRIC MECHANICS

The motion of solid bodies in potential flow with circulation: a geometric outlook

Joris VankerschaverEva KansoJerrold E Marsden

Unambiguous formalism for higher order Lagrangian field theories

CM CamposM de LeonDM de DiegoJoris Vankerschaver

A1 Journal Article in JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL

2008

A connection-theoretic approach to the analysis of symmetries of nonholonomic field theories

Joris Vankerschaver

Symmetry aspects of nonholonomic field theories

Joris VankerschaverDM de Diego

A1 Journal Article in JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL

2007

A class of nonholonomic kinematic constraints in elasticity

Joris Vankerschaver

A1 Journal Article in JOURNAL OF PHYSICS A-MATHEMATICAL AND THEORETICAL

Continuous and discrete aspects of Lagrangian field theories with nonholonomic constraints

Joris VankerschaverFrans Cantrijn

Discrete Lagrangian field theories on Lie groupoids

Joris VankerschaverFrans Cantrijn

A1 Journal Article in JOURNAL OF GEOMETRY AND PHYSICS

Euler-Poincare reduction for discrete field theories

Joris Vankerschaver

A1 Journal Article in JOURNAL OF MATHEMATICAL PHYSICS

The Skinner-Rusk approach for vakonomic and nonholonomic field theories

Frans CantrijnJoris Vankerschaver

Bookchapter in Differential Geometric Methods in Mechanics and Field Theory

2006

Classical field theories with external constraints

Joris Vankerschaver

2005

Geometric aspects of nonholonomic field theories

Joris VankerschaverFrans CantrijnM de LeonDM de Diego

A1 Journal Article in REPORTS ON MATHEMATICAL PHYSICS

The momentum map for nonholonomic field theories with symmetry

Joris Vankerschaver

A1 Journal Article in INTERNATIONAL JOURNAL OF GEOMETRIC METHODS IN MODERN PHYSICS