Research Explorer

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Researcher

Joachim De Schrijver

Awards & Distinctions

21 Results

2015

Effects of irradiation on epithelial wound healing and microbial diversity in an in-vitro oral mucosa model

Tine De RyckTom BoterbergFrederiek-Maarten KerckhofJoachim De SchrijverMarc BrackeTom Van De WieleBarbara Vanhoecke

A2 Journal Article in JOURNAL OF NUCLEAR MEDICINE AND RADIATION THERAPY

2014

Development of an oral mucosa model to study host-microbiome interactions during wound healing

Tine De RyckCharlotte GrootaertLaura JaspaertFrederiek-Maarten KerckhofMireille Van GeleJoachim De SchrijverPieter Van den AbbeeleSimon SwiftMarc BrackeTom Van de Wiele et al.

A1 Journal Article in APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Illumina sequencing of 15 deafness genes using fragmented amplicons

Filip Van NieuwerburghSarah De KeulenaerJoachim De SchrijverJo VandesompeleWim Van CriekingePaul CouckeDieter Deforce

A2 Journal Article in BMC RESEARCH NOTES

2013

GLUCAN SYNTHASE-LIKE8 and STEROL METHYLTRANSFERASE2 are required for ploidy consistency of the sexual reproduction system in Arabidopsis

Nico De StormeJoachim De SchrijverWim Van CriekingeVera WewerPeter DörmannDanny Geelen

A1 Journal Article in PLANT CELL

The CpG island methylator phenotype: what's in a name?

Laura AE HughesVeerle MelotteJoachim De SchrijverMichiel de MaatVincent THBM SmitJudith VMG BovéePim J FrenchPiet A van den BrandtLeo J SchoutenTim De Meyer et al.

A1 Journal Article in CANCER RESEARCH

2012

Genome‐wide RNA‐ and MBD‐sequencing in HCT116 and DKO cells as a global re‐expression model

Joachim De SchrijverGeert TrooskensLinda JW BoschPierre DehanBeatriz CarvalhoLeander Van NesteGerrit MeijerSteve BaylinWim Van Criekinge

Identification of new molecular species using second-generation sequencing

Joachim De SchrijverWim Van CriekingeSofie Bekaert

Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model

Kristof De BeufJoachim De SchrijverOlivier ThasWim Van CriekingeRafael A IrizarryLieven Clement

A1 Journal Article in BMC BIOINFORMATICS

Molecular diagnostics for congenital hearing loss including 15 deafness genes using a next generation sequencing platform

Sarah De KeulenaerJan HellemansSteve LefeverJean-Pierre RenardJoachim De SchrijverHendrik Van de VoordeMohammad Amin TabatabaiefarFilip Van NieuwerburghDaisy FlamezFilip Pattyn et al.

A1 Journal Article in BMC MEDICAL GENOMICS

2011

Accurate long read mapping using enhanced suffix arrays

Michaël VyvermanJoachim De SchrijverWim Van CriekingePeter DawyndtVeerle Fack

Applying massive parallel sequencing to molecular diagnosis of Marfan and Loeys-Dietz syndromes

Machteld BaetensLut Van LaerKim De LeeneerJan HellemansJoachim De SchrijverHendrik Van de VoordeMarjolijn RenardHal DietzRonald V LacroBjörn Menten et al.

A1 Journal Article in HUMAN MUTATION

Massive parallel amplicon sequencing of the breast cancer genes BRCA1 and BRCA2: opportunities, challenges, and limitations

Kim De LeeneerJan HellemansJoachim De SchrijverMachteld BaetensBruce PoppeWim Van CriekingeAnne De PaepePaul CouckeKathleen Claes

A1 Journal Article in HUMAN MUTATION

Micro peptides as a new class of bio-active peptides in Eukaryotes

Jeroen CrappéGerben MenschaertGeert TrooskensJoachim De SchrijverGeert BaggermanWim Van Criekinge

PROKAR‐SEQ: an analysis and visualization framework for next‐generation sequencing based quantification of prokaryotic communities

Joachim De SchrijverPieter-Jan VoldersFrederiek-Maarten KerckhofDagmar ObbelsElie VerleyenWim VyvermanTim De MeyerWim Van Criekinge

Practical tools to implement massive parallel pyrosequencing of PCR products in next generation molecular diagnostics

Kim De LeeneerJoachim De SchrijverLieven ClementMachteld BaetensSteve LefeverSarah De KeulenaerWim Van CriekingeDieter DeforceFilip Van NieuwerburghSofie Bekaert et al.

A1 Journal Article in PLOS ONE

2010

Accurate long read mapping using enhanced suffix arrays

Michaël VyvermanJoachim De SchrijverWim Van CriekingePeter DawyndtVeerle Fack

Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline

Joachim De SchrijverKim De LeeneerSteve LefeverNick SabbeFilip PattynFilip Van NieuwerburghPaul CouckeDieter DeforceJo VandesompeleSofie Bekaert et al.

A1 Journal Article in BMC BIOINFORMATICS

Exploring 3D pooled next-generation sequencing using SNP-Cub^3

Joachim De SchrijverBram De WildeGeert TrooskensJo VandesompeleWim Van Criekinge

Next-generation high throughput interpretation and visualization of genetic variants

Joachim De SchrijverGeert Trooskens

2009

Mining hidden information from your 454 data using modular and database oriented methods

Joachim De Schrijver

VIP and VIP Validator: a diagnostic amplicon sequencing Variant Interpretation Pipeline and variant detection validator

Joachim De SchrijverWim Van Criekinge