Research Explorer

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Researcher

Jasper Zuallaert

Publications & Research Data

Awards & Distinctions

20 Results

2026

The Escherichia coli PeptideAtlas build : characterizing the observed Escherichia coli pan-proteome and its post-translational modifications

Caroline JachmannZhi SunKevin VelgheFlorence Arsène-PloetzeAurélie HirschlerJasper ZuallaertChristine CarapitoRobbin BouwmeesterKay NieseltEric W. Deutsch et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2025

Ultrapotent SARS coronavirus-neutralizing single-domain antibodies that clamp the spike at its base

Sieglinde De CaeInge Van MolleLoes van SchieSophie R. ShoemakerJulie DeckersNincy DebeufSahine LameireWim NerinckxKenny RooseDaria Fijalkowska et al.

A1 Journal Article in NATURE COMMUNICATIONS

2024

Massively parallel analysis of protein libraries using yeast surface display

Hannah EeckhautNico CallewaertJasper Zuallaert

2023

Mutate and observe : utilizing deep neural networks to investigate the impact of mutations on translation initiation

Utku ÖzbulakHyun Jung LeeJasper ZuallaertWesley De NeveStephen DepuydtJoris Vankerschaver

A1 Journal Article in BIOINFORMATICS

PhosphoLingo : protein language models for phosphorylation site prediction

Jasper ZuallaertPathmanaban RamasamyRobbin BouwmeesterNico CallewaertSven Degroeve

2022

Utilizing mutations to evaluate interpretability of neural networks on genomic data

Utku ÖzbulakSolha KangJasper ZuallaertStephen DepuydtJoris Vankerschaver

2021

Massively parallel interrogation of protein fragment secretability using SECRiFY reveals features influencing secretory system transit

Morgane BoonePathmanaban RamasamyJasper ZuallaertRobbin BouwmeesterBerre Van MoerDavy MaddeleinDemet TuranNiels HulstaertHannah EeckhautElien Vandermarliere et al.

A1 Journal Article in NATURE COMMUNICATIONS

MS²DIP : highly accurate MS2 spectrum prediction for modified peptides & MS²Rescore : data-driven rescoring dramatically boosts immunopeptide identification rates

Ralf GabrielsRobbin BouwmeesterJasper ZuallaertLennart MartensSven Degroeve

Translation initiation site prediction using deep learning and synthetic datasets

Yunseol ParkEspoir KabangaJasper ZuallaertHyunjin ShimArnout Van MessemWesley De Neve

2020

Automated learning of biologically relevant features from primary sequence using convolutional neural networks

Jasper ZuallaertWesley De NeveNico CallewaertYvan Saeys

ToxDL : deep learning using primary structure and domain embeddings for assessing protein toxicity

Xiaoyong PanJasper ZuallaertXi WangHong-Bin ShenElda Posada CamposDenys O. MarushchakWesley De Neve

A1 Journal Article in BIOINFORMATICS

2019

Electrochromic photodetectors : toward smarter glasses and nano reflective displays via an electrolytic mechanism

Zhenyin HaiMohammad Karbalaei AkbariZihan WeiJasper ZuallaertWesley De NeveChenyang XueHongyan XuFrancis VerpoortSerge Zhuiykov

A1 Journal Article in ACS APPLIED MATERIALS & INTERFACES

Investigating the biological relevance in trained embedding representations of protein sequences

Jasper ZuallaertXiaoyong PanYvan SaeysXi WangWesley De Neve

2018

Computer-aided diagnosis and localization of glaucoma using deep learning

Mi Jung KimHo-min ParkJasper ZuallaertOlivier JanssensSofie Van HoeckeWesley De Neve

SpliceRover : interpretable convolutional neural networks for improved splice site prediction

Jasper ZuallaertFréderic GodinMi Jung KimArne SoeteYvan SaeysWesley De Neve

A1 Journal Article in BIOINFORMATICS

TISRover : ConvNets learn biologically relevant features for effective translation initiation site prediction

Jasper ZuallaertMijung KimArne SoeteYvan SaeysWesley De Neve

A1 Journal Article in INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS

Web applicable computer-aided diagnosis of glaucoma using deep learning

Mi Jung KimOlivier JanssensH. ParkJasper ZuallaertSofie Van HoeckeWesley De Neve

2017

Few-shot learning using a small-sized dataset of high-resolution FUNDUS images for glaucoma diagnosis

Mi Jung KimJasper ZuallaertWesley De Neve

Interpretable convolutional neural networks for effective translation initiation site prediction

Jasper ZuallaertMi Jung KimYvan SaeysWesley De Neve

2014

Beating the bookmakers: leveraging statistics and Twitter microposts for predicting soccer results

Fréderic GodinJasper ZuallaertBaptist VandersmissenWesley De NeveRik Van de Walle