Research Explorer

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Researcher

Hilde Nelissen

Awards & Distinctions

77 Results

2024

Analysis of maize growth under drought in an automated plant phenotyping platform

Lennart VerbraekenHilde NelissenDirk InzéSteven Maere

Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics

Carolin GronesThomas EekhoutDongbo ShiManuel NeumannLea S. BergYuji KeRachel ShahanKevin L. Cox JrFabio Gomez-CanoHilde Nelissen et al.

Editorial material

MINI‐AC : inference of plant gene regulatory networks using bulk or single‐cell accessible chromatin profiles

Nicolás Manosalva PérezCamilla FerrariJulia EngelhornThomas DepuydtHilde NelissenThomas HartwigKlaas Vandepoele

A1 Journal Article in PLANT JOURNAL

2023

BREEDIT : a multiplex genome editing strategy to improve complex quantitative traits in maize

Christian LorenzoKevin DebrayDenia HerweghWard DeveltereLennert ImpensDries SchaumontWout VandeputteStijn AesaertGriet CoussensYara De Boe et al.

A1 Journal Article in PLANT CELL

Bringing together haploid induction and gene editing in maize

Lennert ImpensHilde NelissenDirk InzéLaurens Pauwels

Burning questions for a warming and changing world : 15 unknowns in plant abiotic stress

Paul E VersluesJulia Bailey-SerresCraig BrodersenThomas N BuckleyLucio ContiAlexander ChristmannJosé R DinnenyErwin GrillScott HayesRobert W Heckman et al.

A1 Journal Article in PLANT CELL

Combining multiplex gene editing and doubled haploid technology in maize

Lennert ImpensChristian LorenzoWout VandeputtePieter WytynckKevin DebrayJari HaeghebaertDenia HerweghTom JacobsTom RuttinkHilde Nelissen et al.

A1 Journal Article in NEW PHYTOLOGIST

Cytokinin promotes jasmonic acid accumulation in the control of maize leaf growth

Aimee N. UyeharaAngel R. Del Valle-EchevarriaCharles T. HunterHilde NelissenKirin DemuynckJames F. CahillZachary GormanGeorg JanderMichael G. Muszynski

A1 Journal Article in PLANTS-BASEL

Improving crop yield potential : underlying biological processes and future prospects

Alexandra J. BurgessCéline Masclaux‐DaubresseGünter StrittmatterAndreas P. M. WeberSamuel Harry TaylorJeremy HarbinsonXinyou YinStephen LongMatthew J. PaulPeter Westhoff et al.

A1 Journal Article in FOOD AND ENERGY SECURITY

Modulating growth regulatory networks for yield improvement in Zea mays : putting genes in their PLAce

Denia HerweghDirk InzéHilde Nelissen

Monitoring of drought stress and transpiration rate using proximal thermal and hyperspectral imaging in an indoor automated plant phenotyping platform

Stien MertensLennart VerbraekenHeike SprengerSam De MeyerKirin DemuynckBernard CannootJulie MerchieJolien De BlockJonathan T. VogelWesley Bruce et al.

A1 Journal Article in PLANT METHODS

PhenoWell® : a novel screening system for soil‐grown plants

Ji LiMichael MintgenSam D'HaeyerAnne HelferHilde NelissenDirk InzéStijn Dhondt

A2 Journal Article in PLANT-ENVIRONMENT INTERACTIONS

Predicting yield of individual field-grown rapeseed plants from rosette-stage leaf gene expression

Sam De MeyerDaniel Felipe Cruz GalvisTom De SwaefPeter LootensJolien De BlockKevin BirdHeike SprengerMichael Van de VoordeStijn HawinkelTom Van Hautegem et al.

A1 Journal Article in PLOS COMPUTATIONAL BIOLOGY

Probing maize growth responses to external stimuli : from phenotyping to molecular networks

Ji LiDirk InzéHilde Nelissen

Spatial transcriptomics of a lycophyte root sheds light on root evolution

Xilan YangWard PoelmansCarolin SeyfferthAbdellah LakehalJulie PevernagieMichiel Van BelMaria NjoLin XuHilde NelissenBert De Rybel et al.

A1 Journal Article in CURRENT BIOLOGY

The cutting edge of grass leaves

Jie ZhangHilde Nelissen

A1 Journal Article in NATURE PLANTS

2022

An in situ sequencing approach maps PLASTOCHRON1 at the boundary between indeterminate and determinate cells

Reinout LaureynsJessica JoossensDenia HerweghJulie PevernagieBenjamin PavieKirin DemuynckKevin DebrayGriet CoussensLaurens PauwelsTom Van Hautegem et al.

A1 Journal Article in PLANT PHYSIOLOGY

Identification of growth regulators using cross-species network analysis in plants

Pasquale Luca CurciJie ZhangNiklas MählerCarolin SeyfferthChanaka MannapperumaTim DielsTom Van HautegemDavid JonsenNathaniel StreetTorgeir R Hvidsten et al.

A1 Journal Article in PLANT PHYSIOLOGY

Increasing yield on dry fields : molecular pathways with growing potential

Rubén Tenorio BerrioHilde NelissenDirk InzéMarieke Dubois

A1 Journal Article in PLANT JOURNAL

Mini-review : transgenerational CRISPR/Cas9 gene editing in plants

Lennert ImpensTom JacobsHilde NelissenDirk InzéLaurens Pauwels

A2 Journal Article in FRONTIERS IN GENOME EDITING

Modeling reveals posttranscriptional regulation of GA metabolism enzymes in response to drought and cold

Leah R. BandHilde NelissenSimon P. PrestonBart RymenEls PrinsenHamada AbdElgawadGerrit T. S. Beemster

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modulation of the DA1 pathway in maize shows that translatability of information from Arabidopsis to crops is complex

Pan GongKirin DemuynckJolien De BlockStijn AesaertGriet CoussensLaurens PauwelsDirk InzéHilde Nelissen

A1 Journal Article in PLANT SCIENCE

SAMBA controls cell division rate during maize development

Pan GongMichiel BontinckKirin DemuynckJolien De BlockKris GevaertDominique EeckhoutGeert PersiauStijn AesaertGriet CoussensMaria Van Lijsebettens et al.

A1 Journal Article in PLANT PHYSIOLOGY

The translatability of genetic networks from model to crop species : lessons from the past and perspectives for the future

Dirk InzéHilde Nelissen

A1 Journal Article in NEW PHYTOLOGIST

2021

A forward genetics approach integrating genome-wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays)

Mara MiculanHilde NelissenManel Ben HassenFabio MarroniDirk InzéMario Enrico PèMatteo Dell’Acqua

A1 Journal Article in PLANT JOURNAL

An RNA in situ hybridization protocol optimized for monocot tissue

Nora R. ZöllnerMargaret BezrutczykReinout LaureynsHilde NelissenRüdiger SimonWolf B. Frommer

A2 Journal Article in STAR PROTOCOLS

Drought affects the rate and duration of organ growth but not inter-organ growth coordination

Lennart VerbraekenNathalie WuytsStien MertensBernard CannootKatrien MaleuxKirin DemuynckJolien De BlockJulie MerchieStijn DhondtGustavo Bonaventure et al.

A1 Journal Article in PLANT PHYSIOLOGY

Expanding the gene-space around PLASTOCHRON1 using genome editing and spatial transcriptomics

Reinout LaureynsDirk InzéHilde Nelissen

Proximal hyperspectral imaging detects diurnal and drought-induced changes in maize physiology

Stien MertensLennart VerbraekenHeike SprengerKirin DemuynckKatrien MaleuxBernard CannootJolien De BlockSteven MaereHilde NelissenGustavo Bonaventure et al.

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

Root engineering in maize by increasing cytokinin degradation causes enhanced root growth and leaf mineral enrichment

Eswarayya RamireddyHilde NelissenJan Erik LeuendorfMaria Van LijsebettensDirk InzéThomas Schmuelling

A1 Journal Article in PLANT MOLECULAR BIOLOGY

The dynamics of maize leaf development : patterned to grow while growing a pattern

Josh StrableHilde Nelissen

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

Translation of basic plant research to crops : functional characterization of organ growth-regulating genes in maize

Pan GongDirk InzéHilde Nelissen

Turgor-time controls grass leaf elongation rate and duration under drought stress

Jonas CoussementSelwyn VillersHilde NelissenDirk InzéKathy Steppe

A1 Journal Article in PLANT CELL AND ENVIRONMENT

2020

Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth

Jasmien VercruysseMichiel Van BelCristina Maria Osuna CruzShubhada Rajabhau KulkarniVéronique Van den StormeHilde NelissenNathalie Gonzalez SanchezDirk InzéKlaas Vandepoele

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

From lab to field : yield stability and shade avoidance genes are massively differentially expressed in the field

Hilde NelissenHeike SprengerKirin DemuynckJolien De BlockTom Van HautegemAlex De VliegherDirk Inzé

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

How grass keeps growing : an integrated analysis of hormonal crosstalk in the maize leaf growth zone

Dirk De VosHilde NelissenHamada AbdElgawadEls PrinsenJan BroeckhoveDirk InzéGerrit TS Beemster

A1 Journal Article in NEW PHYTOLOGIST

Modification of the expression of the aquaporin ZmPIP2;5 affects water relations and plant growth

Lei DingThomas MilhietValentin CouvreurHilde NelissenAdel MezianeBoris ParentStijn AesaertMaria Van LijsebettensDirk InzéFrancois Tardieu et al.

A1 Journal Article in PLANT PHYSIOLOGY

Tapping into the maize root microbiome to identify bacteria that promote growth under chilling conditions

Stien BeirinckxTom ViaeneAnnelies HaegemanJane DebodeFien AmerySteven VandenabeeleHilde NelissenDirk InzéRaul TitoJeroen Raes et al.

A1 Journal Article in MICROBIOME

Understanding plant organ growth : a multidisciplinary field

Hilde NelissenNathalie Gonzalez Sanchez

Editorial material

Using single‐plant‐omics in the field to link maize genes to functions and phenotypes

Daniel Felipe Cruz GalvisSam De MeyerJoke AmpeHeike SprengerDorota HermanTom Van HautegemJolien De BlockDirk InzéHilde NelissenSteven Maere

A1 Journal Article in MOLECULAR SYSTEMS BIOLOGY

2019

Characterization of the dynamics in growth regulating protein complexes in maize

Michiel BontinckHilde NelissenGeert De JaegerDirk Inzé

Functional analysis of Arabidopsis and maize transgenic lines overexpressing the ADP-ribose/NADH pyrophosphohydrolase, AtNUDX7

Elizabeth NjugunaGriet CoussensPia NeytStijn AesaertVeronique StormeKirin DemuynckHannes VanhaerenStijn DhondtYolaine Van HaverLinus Paul et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Source-sink regulation in crops under water deficit

Joana Rita António RodriguesDirk InzéHilde NelissenNelson JM Saibo

A1 Journal Article in TRENDS IN PLANT SCIENCE

Unravelling the genetic basis of Fusarium seedling rot resistance in the MAGIC maize population : novel targets for breeding

Popi SeptianiAlessandra LanubileLorenzo StagnatiMatteo BusconiHilde NelissenMario Enrico PèMatteo Dell’AcquaAdriano Marocco

A1 Journal Article in SCIENTIFIC REPORTS

2018

GSyellow, a multifaceted tag for functional protein analysis in monocot and dicot plants

Nienke BesbruggeJelle Van LeeneDominique EeckhoutBernard CannootShubhada Rajabhau KulkarniNancy De WinneGeert PersiauEveline Van De SlijkeMichiel BontinckStijn Aesaert et al.

A1 Journal Article in PLANT PHYSIOLOGY

Growth rate rather than growth duration drives growth heterosis in maize B104 hybrids

Kim FeysKirin DemuynckJolien De BlockAnchal BishtAlex De VliegherDirk InzéHilde Nelissen

A1 Journal Article in PLANT CELL AND ENVIRONMENT

Recent trends in plant protein complex analysis in a developmental context

Michiel BontinckJelle Van LeeneAstrid GadeyneBert De RybelDominique EeckhoutHilde NelissenGeert De Jaeger

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

The reduction in maize leaf growth under mild drought affects the transition between cell division and cell expansion and cannot be restored by elevated gibberellic acid levels

Hilde NelissenXiaohuan SunBart RymenYusuke JikumaruMikko KojimaYumiko TakebayashiRafael AbbeloosKirin DemuynckVeronique StormeMarnik Vuylsteke et al.

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

2017

Altered expression of maize PLASTOCHRON1 enhances biomass and seed yield by extending cell division duration

Xiaohuan SunJames CahillTom Van HautegemKim FeysClinton WhippleOndrej NovakSofie DelbareCharlot VersteeleKirin DemuynckJolien De Block et al.

A1 Journal Article in NATURE COMMUNICATIONS

Unraveling the mechanisms involved in maize leaf growth heterosis

Kim FeysDirk InzéHilde Nelissen

2016

Combined large-scale phenotyping and transcriptomics in maize reveals a robust growth regulatory network

Joke BauteDorota HermanFrederik CoppensJolien De BlockBram SlabbinckMatteo Dell'AcquaMario Enrico PeSteven MaereHilde NelissenDirk Inzé

A1 Journal Article in PLANT PHYSIOLOGY

How plant hormones and their interactions affect cell growth

Stephen DepuydtStan Van PraetHilde NelissenBartel VanholmeDanny Vereecke

Bookchapter in Molecular cell biology of the growth and differentiation of plant cells

Leaf growth in dicots and monocots : so different yet so alike

Hilde NelissenNathalie Gonzalez SanchezDirk Inzé

A1 Journal Article in CURRENT OPINION IN PLANT BIOLOGY

Overexpression of GA20-OXIDASE1 impacts plant height, biomass allocation and saccharification efficiency in maize

Wannes VoorendHilde NelissenRuben VanholmeAlex De VliegherFrank Van BreusegemWout BoerjanIsabel Roldán-RuizHilde MuylleDirk Inzé

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

Unraveling the molecular mechanisms controlling the transition between cell division and cell expansion during maize leaf development

Xiaohuan SunDirk InzéHilde Nelissen

Up-to-date workflow for plant (phospho)proteomics identifies differential drought-responsive phosphorylation events in maize leaves

Lam Dai VuElisabeth StesMichiel Van BelHilde NelissenDavy MaddeleinDirk InzéFrederik CoppensLennart MartensKris GevaertIve De Smet

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2015

Correlation analysis of the transcriptome of growing leaves with mature leaf parameters in a maize RIL population

Joke BauteDorota HermanFrederik CoppensJolien De BlockBram SlabbinckMatteo Dell'AcquaMario Enrico PèSteven MaereHilde NelissenDirk Inzé

A1 Journal Article in GENOME BIOLOGY

Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf

Hilde NelissenDominique EeckhoutKirin DemuynckGeert PersiauAlan WaltonMichiel Van BelMarieke VervoortJasper CandaeleJolien De BlockStijn Aesaert et al.

A1 Journal Article in PLANT CELL

Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

Matteo Dell'AcquaDaniel M GattiGiorgio PeaFederica CattonaroFrederik CoppensGabriele MagrisAye L HlaingHtay H AungHilde NelissenJoke Baute et al.

A1 Journal Article in GENOME BIOLOGY

RNA interference knockdown of BRASSINOSTEROID INSENSITIVE1 in maize reveals novel functions for brassinosteroid signaling in controlling plant architecture

Gokhan KirHuaxun YeHilde NelissenAnjanasree K NeelakandanAndree S KusnandarAnding LuoDirk InzéAnne W SylvesterYanhai YinPhilip W Becraft

A1 Journal Article in PLANT PHYSIOLOGY

2014

Differential methylation during maize leaf growth targets developmentally regulated genes

Jasper CandaeleKirin DemuynckDouglas MosotiGerrit T. S. BeemsterDirk InzéHilde Nelissen

A1 Journal Article in PLANT PHYSIOLOGY

LEAF-E: a tool to analyze grass leaf growth using function fitting

Wannes VoorendPeter LootensHilde NelissenIsabel Roldán-RuizDirk InzéHilde Muylle

A1 Journal Article in PLANT METHODS

Translational research: from pot to plot

Hilde NelissenMaurice MoloneyDirk Inzé

A1 Journal Article in PLANT BIOTECHNOLOGY JOURNAL

2013

Kinematic analysis of cell division in leaves of mono- and dicotyledonous species: a basis for understanding growth and developing refined molecular sampling strategies

Hilde NelissenBart RymenFrederik CoppensStijn DhondtFabio FioraniGerrit Beemster

Bookchapter in Plant organogenesis : methods and protocols

2012

A local maximum in gibberellin levels regulates maize leaf growth by spatial control of cell division

Hilde NelissenBart RymenYusuke JikumaruKirin DemuynckMaria Van LijsebettensYuji KamiyaDirk InzéGerrit Beemster

A1 Journal Article in CURRENT BIOLOGY

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

Stefanie De BodtJens HollunderHilde NelissenNick MeulemeesterDirk Inzé

A1 Journal Article in NEW PHYTOLOGIST

Histone H2B monoubiquitination is required to reach maximal transcript levels of circadian clock genes in Arabidopsis

Kristiina HimanenMagdalena WoloszynskaTommaso M BoccardiSteven De GroeveHilde NelissenLeonardo BrunoMarnik VuylstekeMaria Van Lijsebettens

A1 Journal Article in PLANT JOURNAL

2010

Plant Elongator regulates auxin-related genes during RNA polymerase II transcription elongation

Hilde NelissenSteven De GroeveDelphine FleuryPia NeytLeonardo BrunoMaria Beatrice BitontiFilip VandenbusscheDominique Van Der StraetenTakahiro YamaguchiHirokazu Tsukaya et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2008

Progress in transformation and regeneration of tropical inbred maize lines in Kenya

Sylvester AnamiAllan Jalemba MgutuLinda Hanley-BowdoinAdam Omer RashaHilde NelissenDirk InzéMaria Van LijsebettensJesse Machuka

A4 Journal Article in Maize Genetics Cooperation Newsletter

2007

Cytological investigations of the Arabidopsis thaliana elo1 mutant give new insights into leaf lateral growth and Elongator function

Andrea FalconeHilde NelissenDelphine FleuryMaria Van LijsebettensMaria Beatrice Bitonti

A1 Journal Article in ANNALS OF BOTANY

Impact of core histone modifications on transcriptional regulation and plant growth

Hilde NelissenTommaso BoccardiKristiina HimanenMaria Van Lijsebettens

A1 Journal Article in CRITICAL REVIEWS IN PLANT SCIENCES

The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth

Delphine FleuryKristiina HimanenGerda CnopsHilde NelissenTommaso BoccardiSteven MaereGerrit BeemsterPia NeytSylvester AnamiPedro Robles et al.

A1 Journal Article in PLANT CELL

2006

The TORNADO1 and TORNADO2 genes function in several patterning processes during early leaf development in Arabidopsis thaliana

Gerda CnopsPia NeytJeroen RaesMarica PetraruloHilde NelissenNenad MalenicaChristian LuschnigOlaf TietzFranck DitengouKlaus Palme et al.

A1 Journal Article in PLANT CELL

2005

The elongata mutants identify a functional Elongator complex in plants with a role in cell proliferation during organ growth

Hilde NelissenDelphine FleuryLeonardo BrunoPedro RoblesLieven De VeylderJan TraasJosé Luis MicolMarc Van MontaguDirk InzéMaria Van Lijsebettens

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2004

Leaf development

Maria Van LijsebettensHilde Nelissen

A2 Journal Article in PROCEEDINGS OF THE INDIAN NATIONAL SCIENCE ACADEMY. PART B, BIOLOGICAL SCIENCES

2003

DRL1, a homolog of the yeast TOT4/KT112 protein, has a function in meristem activity and organ growth in plants

Hilde NelissenJonathan H ClarkeMarc De BlockSabine De BlockRudy VanderhaeghenRaymond E ZielinskiTristan DyerSofie LustDirk InzéMaria Van Lijsebettens

A1 Journal Article in PLANT CELL

2001

The DRL1 gene, a signal identified by transposon tagging is important for leaf growth.

Hilde NelissenJ CLARKERudy VanderhaeghenMaria Van Lijsebettens

A4 Journal Article in MEDEDELINGEN VAN DE FACULTEIT LANDBOUWKUNDIGE EN TOEGEPASTE BIOLOGISCHE WETENSCHAPPEN, UNIVERSITEIT GENT