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Researcher
Gerben Menschaert
Profile
Projects
Publications
Activities
Awards & Distinctions
97
Results
2024
Deep learning decodes new sites of RNA translation in medulloblastoma
Jim Clauwaert
Gerben Menschaert
John Prensner
C3
Conference
2024
Deep learning to decode sites of RNA translation in normal and cancerous tissues
Jim Clauwaert
Zahra McVey
Ramneek Gupta
Ian Yannuzzi
Gerben Menschaert
John R. Prensner
Preprint
2024
Multimodal deregulation of imprinted gene HM13 : a pan-cancer study
Floris Voorthuijzen
Cedric Stroobandt
Jeroen Galle
Louis Coussement
Jim Clauwaert
Tine Goovaerts
Ryan Englander
Olga Anczukow
Gerben Menschaert
Wim Van Criekinge
et al.
C3
Conference
2024
Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction
Gaetan De Waele
Gerben Menschaert
Peter Vandamme
Willem Waegeman
Preprint
2024
2023
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks
Gaetan De Waele
Gerben Menschaert
Willem Waegeman
Preprint
2023
An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks
Gaetan De Waele
Gerben Menschaert
Willem Waegeman
Preprint
2023
Multimodal deregulation of imprinted gene HM13 leads to pan-cancer upregulation of putative oncogene MCTS2
Floris Voorthuijzen
Tine Goovaerts
Cedric Stroobandt
Jeroen Galle
Ryan Englander
Olga Anczukow
Wim Van Criekinge
Gerben Menschaert
Tim De Meyer
C3
Conference
2023
RIBO-former: applying attention-based neural networks for precise delineation of translated open reading frames using ribosome profiling data.
Jim Clauwaert
Zahra McVey
Ramneek Gupta
John Prensner
Gerben Menschaert
U
Conference
2023
RIBO-former: leveraging ribosome profiling information to improve the detection of translated open reading frames
Jim Clauwaert
Zahra McVey
Ramneek Gupta
Gerben Menschaert
Preprint
2023
TIS transformer : remapping the human proteome using deep learning
Jim Clauwaert
Zahra McVey
Ramneek Gupta
Gerben Menschaert
A2
Journal Article
in
NAR GENOMICS AND BIOINFORMATICS
2023
2022
Coelomocytes and immunity in axenic longevity
Lucas Mergan
Brecht Driesschaert
Elisabeth Dens
Elke Vandewyer
Louis Coussement
Gerben Menschaert
Bart Braeckman
Liesbet Temmerman
C3
Conference
2022
CpG transformer for imputation of single-cell methylomes
Gaetan De Waele
Jim Clauwaert
Gerben Menschaert
Willem Waegeman
A1
Journal Article
in
BIOINFORMATICS
2022
Editorial : sORF encoded peptides in health and disease
Joseph Rothnagel
Harsha Gowda
Gerben Menschaert
Editorial material
2022
Identification and characterization of eukaryotic small open reading frames and microproteins
Marlies Peeters
Gerben Menschaert
Liesbet Temmerman
Wim Van Criekinge
Dissertation
2022
Standardized annotation of translated open reading frames
Jonathan M. Mudge
Jorge Ruiz-Orera
John R. Prensner
Marie A. Brunet
Ferriol Calvet
Irwin Jungreis
Jose Manuel Gonzalez
Michele Magrane
Thomas F. Martinez
Jana Felicitas Schulz
et al.
A1
Journal Article
in
NATURE BIOTECHNOLOGY
2022
2021
A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq
Jonathan M Mudge
Jorge Ruiz-Orera
John R Prensner
Marie A Brunet
Jose Manuel Gonzalez
Michele Magrane
Thomas Martinez
Jana Felicitas Schulz
Yucheng T Yang
M Mar Albà
et al.
Preprint
2021
Downregulation of the FTO m(6)A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors
Jana Jeschke
Evelyne Collignon
Clemence Al Wardi
Mohammad Krayem
Martin Bizet
Yan Jia
Soizic Garaud
Zena Wimana
Emilie Calonne
Bouchra Hassabi
et al.
A1
Journal Article
in
NATURE CANCER
2021
Explainability in transformer models for functional genomics
Jim Clauwaert
Gerben Menschaert
Willem Waegeman
A1
Journal Article
in
BRIEFINGS IN BIOINFORMATICS
2021
Identification of non-canonical translation products in C. elegans using tandem mass spectrometry
Bhavesh S. Parmar
Marlies Peeters
Kurt Boonen
Ellie C. Clark
Geert Baggerman
Gerben Menschaert
Liesbet Temmerman
A1
Journal Article
in
FRONTIERS IN GENETICS
2021
Ion mobility coupled to a time-of-flight mass analyzer combined with fragment intensity predictions improves identification of classical bioactive peptides and small open reading frame-encoded peptides
Marlies Peeters
Geert Baggerman
Ralf Gabriels
Elise Pepermans
Gerben Menschaert
Kurt Boonen
A1
Journal Article
in
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
2021
Role of coelomocytes and immunity in axenic dietary restriction
Lucas Mergan
Brecht Driesschaert
Elisabeth Dens
Elke Vandewyer
Louis Coussement
Gerben Menschaert
Bart Braeckman
Liesbet Temmerman
C3
Conference
2021
Spectral prediction features as a solution for the search space size problem in proteogenomics
Steven Verbruggen
Siegfried Gessulat
Ralf Gabriels
Anna Matsaroki
Hendrik Van de Voorde
Bernhard Kuster
Sven Degroeve
Lennart Martens
Wim Van Criekinge
Mathias Wilhelm
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2021
2020
A methodology for discovering novel brain-relevant peptides : combination of ribosome profiling and peptidomics
Ravi Tharakan
Simion Kreimer
Ceereena Ubaida-Mohien
Joelle Lavoie
Volodimir Olexiouk
Gerben Menschaert
Nicholas T. Ingolia
Robert N. Cole
Koko Ishizuka
Akira Sawa
et al.
A1
Journal Article
in
NEUROSCIENCE RESEARCH
2020
BRAWNIN: A sORF-encoded Peptide Essential for Vertebrate Mitochondrial Complex III Assembly
Shan Zhang
Chao Liang
Camille Mary
Baptiste Kerouanton
Joel Francisco
Narendra Suhas Jagannathan
Volodimir Olexiouk
Jih Hou Peh
Claire Tang
Gio Fidelito
et al.
Preprint
2020
Deep learning techniques for genome processing and annotation tasks in prokaryotes
Jim Clauwaert
Willem Waegeman
Marjan De Mey
Gerben Menschaert
Dissertation
2020
Functional role of Tet-mediated RNA hydroxymethylcytosine in mouse ES cells and during differentiation
Jie Lan
Nicholas Rajan
Martin Bizet
Audrey Penning
Nitesh K. Singh
Diana Guallar
Emilie Calonne
Andrea Li Greci
Elise Bonvin
Rachel Deplus
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2020
Mitochondrial peptide BRAWNIN is essential for vertebrate respiratory complex III assembly
Shan Zhang
Boris Reljić
Chao Liang
Baptiste Kerouanton
Joel Celio Francisco
Jih Hou Peh
Camille Mary
Narendra Suhas Jagannathan
Volodimir Olexiouk
Claire Tang
et al.
A1
Journal Article
in
NATURE COMMUNICATIONS
2020
The hunt for sORFs : a multidisciplinary strategy
Marlies Peeters
Gerben Menschaert
A1
Journal Article
in
EXPERIMENTAL CELL RESEARCH
2020
The proteogenomic hunt for new proteoforms using ribosome profiling
Steven Verbruggen
Wim Van Criekinge
Gerben Menschaert
Petra Van Damme
Dissertation
2020
2019
A combined strategy of neuropeptide prediction and tandem mass spectrometry identifies evolutionarily conserved ancient neuropeptides in the sea anemone Nematostella vectensis
Eisuke Hayakawa
Hiroshi Watanabe
Gerben Menschaert
Thomas W Holstein
Geert Baggerman
Liliane Schoofs
A1
Journal Article
in
PLOS ONE
2019
A proteogenomic endeavour investigating the unexplored domain of putatively coding small open reading frames
Volodimir Olexiouk
Wim Van Criekinge
Gerben Menschaert
Dissertation
2019
Beyond genes : re-identifiability of proteomic data and its implications for personalized medicine
Kurt Boonen
Kristien Hens
Gerben Menschaert
Geert Baggerman
Dirk Valkenborg
Gokhan Ertaylan
A1
Journal Article
in
GENES
2019
DeepRibo : a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns
Jim Clauwaert
Gerben Menschaert
Willem Waegeman
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2019
Multiple solvent elution, a method to counter the effects of coelution and ion suppression in LC-MS analysis in bottom up proteomics
Harshavardhan Budamgunta
Evelyne Maes
Hanny Willems
Gerben Menschaert
Karin Schildermans
Ajay Anand Kumar
Kurt Boonen
Geert Baggerman
A1
Journal Article
in
JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES
2019
PROTEOFORMER 2.0 : further developments in the ribosome profiling-assisted proteogenomic hunt for new proteoforms
Steven Verbruggen
Elvis Ndah
Wim Van Criekinge
Siegfried Gessulat
Bernhard Kuster
Mathias Wilhelm
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2019
Proteomics Standards Initiative extended FASTA format
Pierre-Alain Binz
Jim Shofstahl
Juan Antonio Vizcaíno
Harald Barsnes
Robert J Chalkley
Gerben Menschaert
Emanuele Alpi
Karl Clauser
Jimmy K Eng
Lydie Lane
et al.
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2019
2018
A gene family coding for salivary proteins (SHOT) of the polyphagous spider mite Tetranychus urticae exhibits fast host-dependent transcriptional plasticity
Wim Jonckheere
Wannes Dermauw
Mousaalreza Khalighi
Nena Pavlidi
Wim Reubens
Geert Baggerman
Luc Tirry
Gerben Menschaert
Merijn R Kant
Bartel Vanholme
et al.
A1
Journal Article
in
MOLECULAR PLANT-MICROBE INTERACTIONS
2018
An update on sORFs.org : a repository of small ORFs identified by ribosome profiling
Volodimir Olexiouk
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2018
Complementary use of ribosome profiling and proteomics for mapping the translation landscape
Elvis Ndah
Petra Van Damme
Gerben Menschaert
Lennart Martens
Dissertation
2018
Comprehensive peptide analysis of mouse brain striatum identifies novel sORF-encoded polypeptides
Harshavardhan Budamgunta
Volodimir Olexiouk
Walter Luyten
Karin Schildermans
Evelyne Maes
Kurt Boonen
Gerben Menschaert
Geert Baggerman
A1
Journal Article
in
PROTEOMICS
2018
DeepRibo : precise gene annotation of prokaryotes using deep learning and ribosome profiling data
Jim Clauwaert
Gerben Menschaert
Willem Waegeman
C3
Conference
2018
DeepRibo : precise gene annotation of prokaryotes using deep learning and ribosome profiling data, validated with mass spectrometry data
Jim Clauwaert
Gerben Menschaert
Willem Waegeman
C3
Conference
2018
Deletion 6q drives T-cell leukemia progression by ribosome modulation
Stéphanie Gachet
Tiama El-Chaar
David Avran
Eulalia Genesca
Frédéric Catez
Samuel Quentin
Marc Delord
Gabriel Thérizols
Delphine Briot
Godelieve Meunier
et al.
A1
Journal Article
in
CANCER DISCOVERY
2018
Discovery of noncanonical translation initiation sites through mass spectrometric analysis of protein N termini
Chan Hyun Na
Mustafa Barbhuiya
Min-Sik Kim
Steven Verbruggen
Stephen Eacker
Olga Pletnikova
Juan Troncoso
Marc Halushka
Gerben Menschaert
Christopher Overall
et al.
A1
Journal Article
in
GENOME RESEARCH
2018
Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans
Sven Van Bael
Jan Watteyne
Kurt Boonen
Wouter De Haes
Gerben Menschaert
Niels Ringstad
H. Robert Horvitz
Liliane Schoofs
Steven J. Husson
Liesbet Temmerman
A1
Journal Article
in
JOURNAL OF BIOLOGICAL CHEMISTRY
2018
Short open reading frames and their encoded peptides
Joseph Rothnagel
Gerben Menschaert
Editorial material
2018
The proBAM and proBed standard formats : enabling a seamless integration of genomics and proteomics data
Gerben Menschaert
Xiaojing Wang
Andrew R Jones
Fawaz Ghali
David Fenyö
Volodimir Olexiouk
Bing Zhang
Eric W Deutsch
Tobias Ternent
Juan Antonio Vizcaíno
A1
Journal Article
in
GENOME BIOLOGY
2018
Using the sORFs.Org Database
Volodimir Olexiouk
Gerben Menschaert
U
Journal Article
in
CURRENT PROTOCOLS IN BIOINFORMATICS
2018
mQC : a post-mapping data exploration tool for ribosome profiling
Steven Verbruggen
Gerben Menschaert
A1
Journal Article
in
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
2018
2017
In search of lost small peptides
Serge Plaza
Gerben Menschaert
François Payre
A1
Journal Article
in
Annual Review of Cell and Developmental Biology
2017
Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products
Kenneth Verheggen
Pieter-Jan Volders
Pieter Mestdagh
Gerben Menschaert
Petra Van Damme
Kris Gevaert
Lennart Martens
Jo Vandesompele
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2017
Proteogenomics from a bioinformatics angle : a growing field
Gerben Menschaert
David Fenyö
A1
Journal Article
in
MASS SPECTROMETRY REVIEWS
2017
Proteomics Standards Initiative : fifteen years of progress and future work
Eric W Deutsch
Sandra Orchard
Pierre-Alain Binz
Wout Bittremieux
Martin Eisenacher
Henning Hermjakob
Shin Kawano
Henry Lam
Gerhard Mayer
Gerben Menschaert
et al.
Editorial material
2017
REPARATION : ribosome profiling assisted (re-)annotation of bacterial genomes
Elvis Ndah
Veronique Jonckheere
Adam Giess
Eivind Valen
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2017
eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs
Daria Fijalkowska
Steven Verbruggen
Elvis Ndah
Veronique Jonckheere
Gerben Menschaert
Petra Van Damme
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2017
proBAMconvert : a conversion tool for proBAM/proBed
Volodimir Olexiouk
Gerben Menschaert
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2017
2016
A role for human N-alpha acetyltransferase 30 (Naa30) in maintaining mitochondrial integrity
Petra Van Damme
Thomas V Kalvik
Kristian W Starheim
Veronique Jonckheere
Line M Myklebust
Gerben Menschaert
Jan Erik Varhaug
Kris Gevaert
Thomas Arnesen
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
Fast and reliable quantitative peptidomics with labelpepmatch
Rik Verdonck
Wouter De Haes
Dries Cardoen
Gerben Menschaert
Thomas Huhn
Bart Landuyt
Geert Baggerman
Kurt Boonen
Tom Wenseleers
Liliane Schoofs
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2016
Identification of small novel coding sequences, a proteogenomic endeavor
Volodimir Olexiouk
Gerben Menschaert
Bookchapter
in
Proteogenomics
2016
The salivary protein repertoire of the polyphagous spider mite Tetranychus urticae: a quest for effectors
Wim Jonckheere
Wannes Dermauw
Vladimir Zhurov
Nicky Wybouw
Jan Van den Bulcke
Carlos A Villarroel
Robert Greenhalgh
Mike Grbić
Rob C Schuurink
Luc Tirry
et al.
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2016
2015
An update on LNCipedia : a database for annotated human lncRNA sequences
Pieter-Jan Volders
Kenneth Verheggen
Gerben Menschaert
Klaas Vandepoele
Lennart Martens
Jo Vandesompele
Pieter Mestdagh
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
Different approaches to measuring gene expression and DNA methylation and their application in cancer research
Alexander Koch
Wim Van Criekinge
Tim De Meyer
Gerben Menschaert
Dissertation
2015
Micropeptides as non-classical bioactive peptides in Eukaryotes, a ribosome profiling centered approach
Jeroen Crappé
Wim Van Criekinge
Gerben Menschaert
Geert Baggerman
Dissertation
2015
PROTEOFORMER: deep proteome coverage through ribosome profiling and MS integration
Jeroen Crappé
Elvis Ndah
Alexander Koch
Sandra Steyaert
Daria Fijalkowska
Sarah De Keulenaer
Ellen De Meester
Tim De Meyer
Wim Van Criekinge
Petra Van Damme
et al.
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
sORFs.org : a repository of small ORFs identified by ribosome profiling
Volodimir Olexiouk
Jeroen Crappé
Steven Verbruggen
Kenneth Verheggen
Lennart Martens
Gerben Menschaert
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2015
2014
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites
Alexander Koch
Daria Fijalkowska
Sandra Steyaert
Elvis Ndah
Jeroen Crappé
Sarah De Keulenaer
Ellen De Meester
Ming Ma
Ben Shen
Kris Gevaert
et al.
A1
Journal Article
in
PROTEOMICS
2014
Little things make big things happen : a summary of micropeptide encoding genes
Jeroen Crappé
Wim Van Criekinge
Gerben Menschaert
A2
Journal Article
in
EUPA OPEN PROTEOMICS
2014
N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men
Petra Van Damme
Daria Fijalkowska
Wim Van Criekinge
Gerben Menschaert
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2014
2013
Colorado potato beetle (Coleoptera) gut transcriptome analysis: expression of RNA interference-related genes
L Swevers
Hanneke Huvenne
Gerben Menschaert
D Kontogiannatos
A Kourti
Y Pauchet
R Ffrench-Constant
Guy Smagghe
A1
Journal Article
in
INSECT MOLECULAR BIOLOGY
2013
Combining endogenous peptide prediction and MS/MS peptide search: an application to search for the most primitive neuropeptides
Eisuke Hayakawa
Hiroshi Watanabe
Gerben Menschaert
Thomas Holstein
Geert Baggerman
Liliane Schoofs
U
Conference
2013
Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs
Jeroen Crappé
Wim Van Criekinge
Geert Trooskens
Eisuke Hayakawa
Walter Luyten
Geert Baggerman
Gerben Menschaert
A1
Journal Article
in
BMC GENOMICS
2013
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events
Gerben Menschaert
Wim Van Criekinge
Tineke Notelaers
Alexander Koch
Jeroen Crappé
Kris Gevaert
Petra Van Damme
A1
Journal Article
in
MOLECULAR & CELLULAR PROTEOMICS
2013
Improving the identification rate of endogenous peptides using electron transfer dissociation and collision-induced dissociation
Eisuke Hayakawa
Gerben Menschaert
Pieter-Jan De Bock
Walter Luyten
Kris Gevaert
Geert Baggerman
Liliane Schoofs
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2013
Mass spectrometry and ribosome profiling, a perfect combination towards a more comprehensive identification strategy of true in vivo protein forms
Jeroen Crappé
Alexander Koch
Sandra Steyaert
Wim Van Criekinge
Petra Van Damme
Gerben Menschaert
C3
Conference
2013
Micropeptides, the next best thing after micro-RNA?: combining in silico prediction and ribosome profiling in a genome-wide search for novel micropeptides
Jeroen Crappé
Geert Trooskens
Eisuke Hayakawa
Walter Luyten
Geert Baggerman
Wim Van Criekinge
Gerben Menschaert
C3
Conference
2013
PIUS: peptide identification by unbiased search
Eduardo P Costa
Gerben Menschaert
Walter Luyten
Kurt De Grave
Jan Ramon
A1
Journal Article
in
BIOINFORMATICS
2013
PROTEIN IDENTIFICATION BASED ON RIBOSOME TARGETED MRNA FRAGMENTS.
Elvis Ndah
Jeroen Crappé
Alexander Koch
Gerben Menschaert
Sandra Steyaert
Petra Van Damme
U
Conference
2013
Quality evaluation of methyl binding domain based kits for enrichment DNA-methylation sequencing
Tim De Meyer
Evi Mampaey
Michaël Vlemmix
Simon Denil
Geert Trooskens
Jean-Pierre Renard
Sarah De Keulenaer
Pierre Dehan
Gerben Menschaert
Wim Van Criekinge
A1
Journal Article
in
PLOS ONE
2013
Reviving nuclear translation
Petra Van Damme
Gerben Menschaert
Other
2013
2012
Micropeptides, the next best thing after micro-RNA?: combining in silico prediction and ribosome profiling in a genome-wide search for novel micropeptides
Jeroen Crappé
Geert Trooskens
Eisuke Hayakawa
Walter Luyten
Geert Baggerman
Wim Van Criekinge
Gerben Menschaert
C3
Conference
2012
Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool
Gerben Menschaert
Eisuke Hayakawa
Liliane Schoofs
Wim Van Criekinge
Geert Baggerman
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2012
2011
A novel endogenous peptide identified in the pancreas enhances learning behavior and inhibits neuro degeneration
Bart Landuyt
Melissa Paulussen
Gerben Menschaert
Geert Baggerman
A Van Dijck
P De Deyn
T Wahle
C Dotti
Lut Arckens
Walter Luyten
et al.
U
Conference
2011
Diversity in protein glycosylation among insect species
Gianni Vandenborre
Guy Smagghe
Bart Ghesquière
Gerben Menschaert
Nagender Rao
Kris Gevaert
Els Van Damme
A1
Journal Article
in
PLOS ONE
2011
Interaction of the tobacco lectin with histone proteins
Dieter Schouppe
Bart Ghesquière
Gerben Menschaert
Winnok De Vos
Stéphanie Bourque
Geert Trooskens
Paul Proost
Kris Gevaert
Els Van Damme
A1
Journal Article
in
PLANT PHYSIOLOGY
2011
Linking mass spectrometric imaging and traditional peptidomics: a validation in the obese mouse model
Laurens Minerva
Kurt Boonen
Gerben Menschaert
Bart Landuyt
Geert Baggerman
Lut Arckens
A1
Journal Article
in
ANALYTICAL CHEMISTRY
2011
Micro peptides as a new class of bio-active peptides in Eukaryotes
Jeroen Crappé
Gerben Menschaert
Geert Trooskens
Joachim De Schrijver
Geert Baggerman
Wim Van Criekinge
C3
Conference
2011
2010
A hybrid, de novo based, genome-wide database search approach applied to the sea urchin neuropeptidome
Gerben Menschaert
Tom Vandekerckhove
Geert Baggerman
Bart Landuyt
Jonathan V Sweedler
Liliane Schoofs
Walter Luyten
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
Bioinformatics solutions for MS/MS data interpretation tailored to the peptidomics field
Gerben Menschaert
Wim Van Criekinge
Dissertation
2010
Glycosylation signatures in Drosophila : fishing with lectins
Gianni Vandenborre
Els Van Damme
Bart Ghesquière
Gerben Menschaert
Mohamad Hamshou
Rameshwaram Nagender Rao
Kris Gevaert
Guy Smagghe
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
Mining cleavage sites of the mouse peptidome
Kurt De Grave
Tias Guns
Tom Vandekerckhove
Bart Landuyt
Gerben Menschaert
Wim Van Criekinge
Liliane Schoofs
Walter Luyten
U
Conference
2010
Peptidomics coming of age : a review of contributions from a bioinformatics angle
Gerben Menschaert
Tom Vandekerckhove
Geert Baggerman
Liliane Schoofs
Walter Luyten
Wim Van Criekinge
A1
Journal Article
in
JOURNAL OF PROTEOME RESEARCH
2010
2009
Bioinformatics solutions for MS/MS interpretation tailored to the peptidomics field
Gerben Menschaert
Tom Vandekerckhove
Geert Baggerman
Bart Landuyt
Liliane Schoofs
Walter Luyten
Wim Van Criekinge
A4
Journal Article
in
COMMUNICATIONS IN AGRICULTURAL AND APPLIED BIOLOGICAL SCIENCES
2009
Spectral clustering in peptidomics studies helps to unravel modification profile of biologically active peptides and enhances peptide identification rate
Gerben Menschaert
Tom Vandekerckhove
Bart Landuyt
Eisuke Hayakawa
Liliane Schoofs
Walter Luyten
Wim Van Criekinge
A1
Journal Article
in
PROTEOMICS
2009
2008
PubMeth: a cancer methylation database combining text-mining and expert annotation
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
A1
Journal Article
in
NUCLEIC ACIDS RESEARCH
2008
Pubmeth: reviewed methylation database in cancer based on text-mining
Maté Ongenaert
Leander Van Neste
Tim De Meyer
Gerben Menschaert
Sofie Bekaert
Wim Van Criekinge
C1
Conference
2008
2007
SOS MS: Enhancements for Mascot Search Engine and Other Mass Spectrometry Software
Tom TM Vandekerckhove
Gerben Menschaert
Bart Landuyt
Kurt Boonen
Wim Van Criekinge
U
Conference
2007
2000
Maturation performance, offspring quality and lipid composition of Macrobrachium rosenbergii females fed increasing levels of dietary phospholipids.
RO CAVALLI
Gerben Menschaert
Patrick Lavens
Patrick Sorgeloos
A1
Journal Article
in
AQUACULTURE INTERNATIONAL
2000