Research Explorer

Your browser does not support JavaScript or JavaScript is not enabled. Without JavaScript some functions of this webapplication may be disabled or cause error messages. To enable JavaScript, please consult the manual of your browser or contact your system administrator.

Researcher

Gaetan De Waele

Publications & Research Data

Awards & Distinctions

9 Results

2026

How negative sampling shapes the performance of transcription factor binding site prediction models

Natan TourneGaetan De WaeleVanessa VermeirssenWillem Waegeman

A1 Journal Article in BIOINFORMATICS

2025

A systematic assessment of single-cell language model configurations

Gaetan De WaeleGerben MenschaertWillem Waegeman

Harnessing machine learning to predict antibiotic susceptibility in Pseudomonas aeruginosa biofilms

Fauve VergauweGaetan De WaeleAndrea SassCallum HighmoreNiall HanrahanYoshiki CookMads LichtenbergMargo CnockaertPeter VandammeSumeet Mahajan et al.

A1 Journal Article in NPJ BIOFILMS AND MICROBIOMES

Machine learning reveals novel compound for the improved production of chitooligosaccharides in Escherichia coli

Friederike MeyGaetan De WaeleWouter DemeesterChiara GuidiDries DuchiTomek DiederenHanne KochuytKirsten Van HuffelNicola ZamboniWillem Waegeman et al.

A1 Journal Article in NEW BIOTECHNOLOGY

Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De WaeleGerben MenschaertPeter VandammeWillem Waegeman

A1 Journal Article in COMPUTERS IN BIOLOGY AND MEDICINE

Self-supervised transformers for biological data modalities

Gaetan De WaeleWillem WaegemanGerben Menschaert

2024

An antimicrobial drug recommender system using MALDI-TOF MS and dual-branch neural networks

Gaetan De WaeleGerben MenschaertWillem Waegeman

A2 Journal Article in ELIFE

Pre-trained Maldi Transformers improve MALDI-TOF MS-based prediction

Gaetan De WaeleGerben MenschaertPeter VandammeWillem Waegeman

2022

CpG transformer for imputation of single-cell methylomes

Gaetan De WaeleJim ClauwaertGerben MenschaertWillem Waegeman

A1 Journal Article in BIOINFORMATICS