Research Explorer

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Researcher

Florence Buytaers

Awards & Distinctions

7 Results

2024

Strain-level characterization of foodborne pathogens without culture enrichment for outbreak investigation using shotgun metagenomics facilitated with nanopore adaptive sampling

Florence BuytaersBavo VerhaegenTom Van NieuwenhuysenNancy H. C. RoosensKevin VannesteKathleen MarchalSigrid C. J. De Keersmaecker

U Journal Article in FRONTIERS IN MICROBIOLOGY

2023

Development of strain-level shotgun metagenomics approaches to detect and characterize microbiological contaminants in the context of food safety

Florence BuytaersKathleen MarchalSigrid De Keersmaecker

2022

Metagenomics to detect and characterize viruses in food samples at genome level? Lessons learnt from a norovirus study

Florence BuytaersBavo VerhaegenMathieu GandJolien D'aesKevin VannesteNancy H. C. RoosensKathleen MarchalSarah DenayerSigrid C. J. De Keersmaecker

A1 Journal Article in FOODS

2021

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence BuytaersAssia SaltykovaWesley MattheusValeska LaisnezBavo VerhaegenNancy H. C. RoosensKevin VannesteNaiima HammamiBrigitte PochetVera Cantaert et al.

A1 Journal Article in MICROBIAL GENOMICS

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence BuytaersAssia SaltykovaSarah DenayerBavo VerhaegenKevin VannesteNancy H. C. RoosensDenis PierardKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence BuytaersAssia SaltykovaSarah DenayerBavo VerhaegenKevin VannesteNancy H. C. RoosensDenis PiérardKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in MICROORGANISMS

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia SaltykovaFlorence BuytaersSarah DenayerBavo VerhaegenDenis PiérardNancy H. C. RoosensKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES