Research Explorer

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Researcher

Fabricio De Almeida Silva

Publications & Research Data

Awards & Distinctions

11 Results

2025

Asymmetric genome merging leads to gene expression novelty through nucleo‐cytoplasmic disruptions and transcriptomic shock in Chlamydomonas triploids

Lucas ProstQuinten BafortAntoine Van de VloetFabricio De Almeida SilvaYunn Thet PaingGriet CasteleynSofie D'hondtOlivier De ClerckYves Van de Peer

A1 Journal Article in NEW PHYTOLOGIST

doubletrouble : an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications

Fabricio De Almeida SilvaYves Van de Peer

A1 Journal Article in BIOINFORMATICS

Gene expression divergence following gene and genome duplications in spatially resolved plant transcriptomes

Fabricio De Almeida SilvaYves Van de Peer

A1 Journal Article in PLANT CELL

SOI : robust identification of orthologous synteny with the Orthology Index and broad applications in evolutionary genomics

Ren-Gang ZhangHong-Yun ShangRichard Ian MilneFabricio De Almeida SilvaHengchi ChenMin-Jie ZhouHeng ShuKai-Hua JiaYves Van de PeerYong-Peng Ma

A1 Journal Article in NUCLEIC ACIDS RESEARCH

2024

Hybridexpress : an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors

Fabricio De Almeida SilvaLucas Prost BoxoenYves Van de Peer

A1 Journal Article in NEW PHYTOLOGIST

The immediate metabolomic effects of whole‐genome duplication in the greater duckweed, Spirodela polyrhiza

Tian WuQuinten BafortFrederik MortierFabricio De Almeida SilvaAnnelore NatranYves Van de Peer

A1 Journal Article in AMERICAN JOURNAL OF BOTANY

2023

Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package

Fabricio De Almeida SilvaYves Van de Peer

A1 Journal Article in METHODS IN ECOLOGY AND EVOLUTION

Genomic insights into adaptation to karst limestone and incipient speciation in East Asian Platycarya spp. (Juglandaceae)

Yu CaoFabricio De Almeida SilvaWei-Ping ZhangYa-Mei DingDan BaiWei-Ning BaiBo-Wen ZhangYves Van de PeerDa-Yong Zhang

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION

syntenet : an R/Bioconductor package for the inference and analysis of synteny networks

Fabricio De Almeida SilvaTao ZhaoKristian K UllrichM Eric SchranzYves Van de Peer

A1 Journal Article in BIOINFORMATICS

The Soybean Expression Atlas v2 : a comprehensive database of over 5000 RNA‐seq samples

Fabricio De Almeida SilvaFrancisnei Pedrosa‐SilvaThiago M. Venancio

A1 Journal Article in PLANT JOURNAL

Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms

Fabricio De Almeida SilvaYves Van de Peer

A1 Journal Article in MOLECULAR BIOLOGY AND EVOLUTION