Research Explorer

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Researcher

Evy Timmerman

Awards & Distinctions

63 Results

2024

High-throughput nanoflow proteomics using a dual-column electrospray source

An StaesKatie BoucherSara DufourTeresa MaiaEvy TimmermanDelphi Van HaverJarne PauwelsHans DemolJonathan VandenbusscheKris Gevaert et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

In vivo proteolytic profiling of the type I and type II metacaspases in Chlamydomonas reinhardtii exposed to salt stress

Georgia Antonia VergouAmit K BajhaiyaLuisa CorredorSaul Lema AsquiEvy TimmermanFrancis ImpensChristiane Funk

A1 Journal Article in PHYSIOLOGIA PLANTARUM

Revealing the transitory and local effect of zebularine on development and on proteome dynamics of Salix purpurea

Andrea PaganoCarolina GomesEvy TimmermanPaweł SulimaJerzy Andrzej PrzyborowskiDariusz KruszkaFrancis ImpensJorge Almiro Pinto Paiva

A1 Journal Article in FRONTIERS IN PLANT SCIENCE

SlyB encapsulates outer membrane proteins in stress-induced lipid nanodomains

Arne JanssensVan Son NguyenAdam J CecilSander E Van der VerrenEvy TimmermanMichaël DegheltAlexander J PakJean-François ColletFrancis ImpensHan Remaut

A1 Journal Article in NATURE

2023

Increasing the overall proteome coverage by combining protein digestion by Tryp-N and trypsin

Jade HawksworthLode DenolfEvy TimmermanKris Gevaert

Bookchapter in Mass spectrometry-based proteomics

Protein interactors of 3-O sulfated heparan sulfates in human MCI and age-matched control cerebrospinal fluid

Andreia Sofia da Costa de Monica FerreiraEvy TimmermanAn StaesMarnik VuylstekeLouis De MuynckKris Gevaert

A1 Journal Article in SCIENTIFIC DATA

Structure–function study of a Ca2+-independent metacaspase involved in lateral root emergence

Simon StaelIgor SabljićDominique AudenaertThilde AnderssonLiana TsiatsianiRobert P. KumpfAndreu Vidal-AlbalatCecilia LindgrenDominique VercammenSilke Jacques et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The extracellular matrix dictates regional competence for tumour initiation

Nordin BansaccalPauline VieugueRahul SarateYura SongEsmeralda MinguijonYekaterina A MiroshnikovaDagmar ZeuschnerAmandine CollinJustine AllardDan Engelman et al.

A1 Journal Article in NATURE

Virotrap : trapping protein complexes in virus-like particles

Georgios MoschonasMargaux De MeyerDelphine De SutterEvy TimmermanPetra Van DammeSven Eyckerman

Bookchapter in Mass spectrometry-based proteomics

2022

A strong cation exchange chromatography protocol for examining N-terminal proteoforms

Esperanza FernándezAnnelies BogaertEvy TimmermanAn StaesFrancis ImpensKris Gevaert

Bookchapter in Yeast functional genomics : methods and protocols

Characterization of RBPome in oxidative stress conditions

Zhicheng ZhangEvy TimmermanFrancis ImpensFrank Van Breusegem

Bookchapter in Reactive oxygen species in plants : methods and protocols

Characterization of the Arabidopsis RBPome in oxidative stress conditions

Zhicheng ZhangEvy TimmermanFrancis ImpensFrank Van Breusegem

The final maturation state of β-actin involves N-terminal acetylation by NAA80, not N-terminal arginylation by ATE1

Adrian DrazicEvy TimmermanUlrike KajanMichaël MarieSylvia VarlandFrancis ImpensKris GevaertThomas Arnesen

A1 Journal Article in JOURNAL OF MOLECULAR BIOLOGY

2021

Mechanisms of congenital heart disease caused by NAA15 haploinsufficiency

Tarsha L. WardWarren TaiSarah U. MortonFrancis ImpensPetra Van DammeDelphi Van HaverEvy TimmermanGabriela VenturiniKehan ZhangMin Young Jang et al.

A1 Journal Article in CIRCULATION RESEARCH

2019

Salmonella Typhi, Paratyphi A, Enteritidis and Typhimurium core proteomes reveal differentially expressed proteins linked to the cell surface and pathogenicity

Sara SalehSandra Van PuyveldeAn StaesEvy TimmermanBarbara BarbéJan JacobsKris GevaertStijn Deborggraeve

A1 Journal Article in PLOS NEGLECTED TROPICAL DISEASES

2018

Impairment of angiogenesis by fatty acid synthase inhibition involves mTOR malonylation

Ulrike BruningFrancisco Morales-RodriguezJoanna KaluckaJermaine GoveiaFederico TavernaKarla CS QueirozCharlotte DuboisAnna Rita CantelmoRongyuan ChenStefan Loroch et al.

A1 Journal Article in CELL METABOLISM

NAA80 is actin’s N-terminal acetyltransferase and regulates cytoskeleton assembly and cell motility

Adrian DrazicHenriette AksnesMichaël MarieMalgorzata BoczkowskaSylvia VarlandEvy TimmermanHåvard FoynNina GlomnesGrzegorz RebowskiFrancis Impens et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2017

Confounding factors in extracellular vesicle ultrafiltration and protein analysis

Glenn VergauwenBert DhondtJan Van DeunEvy TimmermanKris GevaertGeert BraemsRudy Van den BroeckeVeronique CocquytHannelore DenysOlivier De Wever et al.

Confounding factors of ultrafiltration and protein analysis in extracellular vesicle research

Glenn VergauwenBert DhondtJan Van DeunEva De SmedtGeert BerxEvy TimmermanKris GevaertIlkka MiinalainenVeronique CocquytGeert Braems et al.

A1 Journal Article in SCIENTIFIC REPORTS

Expanding the interactome of TES by exploiting TES modules with different subcellular localizations

Stefano SalaMarleen Van TroysSandrine MedvesMarie CatillonEvy TimmermanAn StaesElisabeth Schaffner-ReckingerKris GevaertChristophe Ampe

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Identification of confounding factors of EV isolation and protein analysis

Glenn VergauwenBert DhondtJan Van DeunEvy TimmermanKris GevaertVeronique CocquytGeert BraemsRudy Van den BroeckeHannelore DenysOlivier De Wever et al.

Phase separation of C9orf72 dipeptide repeats perturbs stress granule dynamics

Steven BoeynaemsElke BogaertDenes KovacsAlbert KonijnenbergEvy TimmermanAlex VolkovMainak GuharoyMathias De DeckerTom JaspersVeronica H Ryan et al.

A1 Journal Article in MOLECULAR CELL

Protease substrate profiling by N-terminal COFRADIC

An StaesPetra Van DammeEvy TimmermanBart RuttensElisabeth StesKris GevaertFrancis Impens

Bookchapter in Protein terminal profiling : methods and protocols

Quality control in mass spectrometry-based proteomics

Wout BittremieuxDavid L TabbFrancis ImpensAn StaesEvy TimmermanLennart MartensKris Laukens

A1 Journal Article in MASS SPECTROMETRY REVIEWS

2016

An extra dimension in protein tagging by quantifying universal proteotypic peptides using targeted proteomics

Giel VandemoorteleAn StaesGiulia GonnelliNoortje SamynDelphine De SutterElien VandermarliereEvy TimmermanKris GevaertLennart MartensSven Eyckerman

A1 Journal Article in SCIENTIFIC REPORTS

It's time for some 'site'-seeing: novel tools to monitor the ubiquitin landscape in Arabidopsis thaliana

Alan WaltonElisabeth StesNicolas CybulskiMichiel Van BelSabrina IñigoAstrid Nagels DurandEvy TimmermanJefri HeymanLaurens PauwelsLieven De Veylder et al.

A1 Journal Article in PLANT CELL

Trapping mammalian protein complexes in viral particles

Sven EyckermanKevin TitecaEmmy Van QuickelbergheEva ClootsAnnick VerheeNoortje SamynLeentje De CeuninckEvy TimmermanDelphine De SutterSam Lievens et al.

A1 Journal Article in NATURE COMMUNICATIONS

2015

Proteomic approaches to identify substrates of the three Deg/HtrA proteases of the cyanobacterium Synechocystis sp PCC 6803

Lam X TamHarald AignerEvy TimmermanKris GevaertChristiane Funk

A1 Journal Article in BIOCHEMICAL JOURNAL

Toll-like receptor 4 engagement on dendritic cells restrains phago-lysosome fusion and promotes cross-presentation of antigens

Andrés AlloattiFiorlla KotsiasAnne-Marie PauwelsJean-Marie CarpierMabel JouveEvy TimmermanLuigia PacePablo VargasMathieu MaurinUlf Gehrmann et al.

A1 Journal Article in IMMUNITY

2014

A COFRADIC protocol to study protein ubiquitination

Elisabeth StesMathias LagaAlan WaltonNoortje SamynEvy TimmermanIve De SmetSofie GoormachtigKris Gevaert

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2013

SCX charge state selective separation of tryptic peptides combined with 2D-RP-HPLC allows for detailed proteome mapping

Lazaro H BetancourtPieter-Jan De BockAn StaesEvy TimmermanYasset Perez-RiverolAniel SanchezVladimir BesadaLuis Javier GonzalezJoël VandekerckhoveKris Gevaert

A1 Journal Article in JOURNAL OF PROTEOMICS

The Arabidopsis METACASPASE9 degradome

Liana TsiatsianiEvy TimmermanPieter-Jan De BockDominique VercammenSimon StaelBrigitte Van De CotteAn StaesMarc GoethalsTine BeunensPetra Van Damme et al.

A1 Journal Article in PLANT CELL

2012

A catalogue of putative HIV-1 protease host cell substrates

Francis ImpensEvy TimmermanAn StaesKathleen MoensKevin AriënBruno VerhasseltJoël VandekerckhoveKris Gevaert

A1 Journal Article in BIOLOGICAL CHEMISTRY

Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity

Davina TondeleirAnja LambrechtsMatthias MüllerVeronique JonckheereThierry DollDrieke VandammeKarima BakkaliDAVY WATERSCHOOTMarianne LemaistreOlivier Debeir et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Chromatographic retention time prediction for posttranslationally modified peptides

Luminita MoruzAn StaesJoseph M FosterMaria HatzouEvy TimmermanLennart MartensLukas Käll

A1 Journal Article in PROTEOMICS

N-terminal acetylome analyses and functional insights of the N-terminal acetyltransferase NatB

Petra Van DammeMarta LasaBogdan PolevodaCristina GazquezAlberto Elosegui-ArtolaDuk Soo KimElena De Juan-PardoKimberly DemeyerKristine HoleEsther Larrea et al.

A1 Journal Article in PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

2011

Redox proteomics of protein-bound methionine oxidation

Bart GhesquièreVeronique JonckheereNiklaas ColaertJoost Van DurmeEvy TimmermanMarc GoethalsJoost SchymkowitzFrederic RousseauJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Selecting protein N-terminal peptides by combined fractional diagonal chromatography

An StaesFrancis ImpensPetra Van DammeBart RuttensMarc GoethalsHans DemolEvy TimmermanJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE PROTOCOLS

thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files

Niklaas ColaertHarald BarsnesMarc VaudelKenny HelsensEvy TimmermanAlbert SickmannKris GevaertLennart Martens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2010

A quantitative proteomics design for systematic identification of protease cleavage events

Francis ImpensNiklaas ColaertKenny HelsensBart GhesquièreEvy TimmermanPieter-Jan De BockBenjamin M ChainJoël VandekerckhoveKris Gevaert

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Complementary positional proteomics for screening substrates of endo- and exoproteases

Petra Van DammeAn StaesSilvia BronsomsKenny HelsensNiklaas ColaertEvy TimmermanFrancesc X AvilesJoël VandekerckhoveKris Gevaert

A1 Journal Article in NATURE METHODS

Integrated proteomic analysis reveals a substantial enrichment of protein trafficking processes in hippocampus tissue after hypoxic stress

Roos Van ElzenBart GhesquièreEvy TimmermanStefaan VandammeLuc MoensKris GevaertSylvia Dewilde

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

The substrate specificity profile of human granzyme A

Petra Van DammeSebastian Maurer-StrohHan HaoNiklaas ColaertEvy TimmermanFrank EisenhaberJoël VandekerckhoveKris Gevaert

A1 Journal Article in BIOLOGICAL CHEMISTRY

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics

Kenny HelsensNiklaas ColaertHarald BarsnesThilo MuthKristian FlikkaAn StaesEvy TimmermanSteffi WortelkampAlbert SickmannJoël Vandekerckhove et al.

A1 Journal Article in PROTEOMICS

2009

Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs

Petra Van DammeSebastian Maurer-StrohKim PlasmanJoost Van DurmeNiklaas ColaertEvy TimmermanPieter-Jan De BockMarc GoethalsFrederic RousseauJoost Schymkowitz et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

Analysis of proteins in Chlamydia trachomatis L2 outer membrane complex, COMC

Svend BirkelundMarie Morgan-FisherEvy TimmermanKris GevaertAllan C. ShawGunna Christiansen

A1 Journal Article in FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Analysis of the gamma-secretase interactome and validation of its association with tetraspanin-enriched microdomains

T WakabayashiK CraessaertsL BammensM BentahirF BorgionsP HerdewijnAn StaesEvy TimmermanJoël VandekerckhoveE Rubinstein et al.

A1 Journal Article in NATURE CELL BIOLOGY

Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity (vol 161, pg 67, 2008)

Yves MeyvisNico CallewaertKris GevaertEvy TimmermanJoost Van DurmeJoost SchymkowitzFrederic RousseauJozef VercruysseEdwin ClaereboutPeter Geldhof

Identification and Functional Characterization of N-Terminally Acetylated Proteins in Drosophila melanogaster

S GoetzeE QeliC MosimannAn StaesB GerritsB RoschitzkiS MohantyEM NiedererE LaczkoEvy Timmerman et al.

A1 Journal Article in PLOS BIOLOGY

Identification of Chlamydia trachomatis CT621, a protein delivered through the type III secretion system to the host cell cytoplasm and nucleus

Anne-Sofie Hobolt-PedersenGunna ChristiansenEvy TimmermanKris GevaertSvend Birkelund

A1 Journal Article in FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

In vitro and in vivo protein-bound tyrosine nitration characterized by diagonal chromatography

Bart GhesquièreNiklaas ColaertKenny HelsensLien DejagerCaroline VanhauteKatleen VerleysenKoen KasEvy TimmermanMarc GoethalsClaude Libert et al.

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

2008

Hybrid N-glycans on the host protective activation-associated secreted proteins of Ostertagia ostertagi and their importance in immunogenicity

Yves MeyvisNico CallewaertKris GevaertEvy TimmermanJoost Van DurmeJoost SchymkowitzFrederic RousseauJozef VercruysseEdwin ClaereboutPeter Geldhof

A1 Journal Article in MOLECULAR AND BIOCHEMICAL PARASITOLOGY

HyperISGylation of old world monkey ISG15 in human cells

Els PattynAnnick VerheeIsabel UyttendaeleJulie PiessevauxEvy TimmermanKris GevaertJoël VandekerckhoveFrank PeelmanJan Tavernier

A1 Journal Article in PLOS ONE

Peptizer: a tool for assessing false positive peptide identifications and manually validating selected results

Kenny HelsensEvy TimmermanJoël VandekerckhoveKris GevaertLennart Martens

A1 Journal Article in MOLECULAR & CELLULAR PROTEOMICS

The proteome of the human neuroblastoma cell line SH-SY5Y: an enlarged proteome

Kambiz GilanyRoos Van ElzenKim MousEdmond CoenWalter Van DongenStefaan VandammeKris GevaertEvy TimmermanJoël VandekerckhoveSylvia Dewilde et al.

A1 Journal Article in BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

2007

A new approach for mapping sialylated N-glycosites in serum proteomes

Bart GhesquièreLien BuylHans DemolJozef Van DammeAn StaesEvy TimmermanJoël VandekerckhoveKris Gevaert

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Assessing a novel microfluidic interface for shotgun proteome analyses

An StaesEvy TimmermanI VAN DAMMEKenny HelsensJoël VandekerckhoveM VOLLMERKris Gevaert

A1 Journal Article in JOURNAL OF SEPARATION SCIENCE

Large-scale identification of N-terminal peptides in the halophilic archaea Halobacterium salinarum and Natronomonas pharaonis

Michalis AivaliotisKris GevaertMichaela FalbAndreas TebbeKosta KonstantinidisBirgit BisleChristian KleinLennart MartensAn StaesEvy Timmerman et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

Proteolytic cleavage of the Chlamydia pneumoniae major outer membrane protein in the absence of Pmp10

N JUULEvy TimmermanKris GevaertG CHRISTIANSENS BIRKELUND

A1 Journal Article in PROTEOMICS

The MAGUK protein MPP7 binds to the polarity protein hDlg1 and facilitates epithelial tight junction formation

VM STUCKEEvy TimmermanJoël VandekerckhoveKris GevaertA HALL

A1 Journal Article in MOLECULAR BIOLOGY OF THE CELL

Vaccination against Ostertagia ostertagi with subfractions of the protective ES-thiol fraction

Yves MeyvisPeter GeldhofKris GevaertEvy TimmermanJozef VercruysseEdwin Claerebout

A1 Journal Article in VETERINARY PARASITOLOGY

2006

Improved tandem mass spectrometric characterization of 3-nitrotyrosine sites in peptides

Bart GhesquièreMarc GoethalsJozef Van DammeAn StaesEvy TimmermanJoël VandekerckhoveKris Gevaert

A1 Journal Article in RAPID COMMUNICATIONS IN MASS SPECTROMETRY

2005

The human platelet proteome mapped by peptide-centric proteomics: a functional protein profile

Lennart MartensPetra Van DammeJozef Van DammeAn StaesEvy TimmermanBart GhesquièreGrégoire R ThomasJoël VandekerckhoveKris Gevaert

A1 Journal Article in PROTEOMICS