Research Explorer

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Researcher

Ellen De Meester

Publications & Research Data

Awards & Distinctions

15 Results

2026

Integrated single-cell analysis reveals interferon-driven immune signatures in a DENV1 human infection model

Anne-Sofie VermeerschT.W. VerdoncktC. StruyfsEllen De MeesterA. WaickmanS.J. ThomasK.K. AriënO. LagatieFilip Van Nieuwerburgh

2024

Genome-wide methylome stability and parental effects in the worldwide distributed Lombardy poplar

An Vanden BroeckTim MeesePieter VerscheldeKaren CoxBerthold HeinzeDieter DeforceEllen De MeesterFilip Van Nieuwerburgh

A1 Journal Article in BMC BIOLOGY

2023

The multi-omics single-cell landscape of sinus mucosa in uncontrolled severe chronic rhinosinusitis with nasal polyps

Zhaofeng XuYanran HuangTim MeeseSharon Van NevelGabriële HoltappelsStijn VanheeBarbara M. BrökerZhengqi LiEllen De MeesterNatalie De Ruyck et al.

A1 Journal Article in CLINICAL IMMUNOLOGY

2021

ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation

Richard de ReuverEvelien DierickBartosz WiernickiKatrien StaesLeen SeysEllen De MeesterTuur MuyldermansAlexander BotzkiBart LambrechtFilip Van Nieuwerburgh et al.

A1 Journal Article in CELL REPORTS

DNA methylation regulates transcription factor-specific neurodevelopmental but not sexually dimorphic gene expression dynamics in zebra finch telencephalon

Jolien DiddensLouis CoussementCarolina Frankl-VilchesGaurav MajumdarSandra SteyaertSita M. Ter HaarJeroen GalleEllen De MeesterSarah De KeulenaerWim Van Criekinge et al.

A1 Journal Article in FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY

2020

Distinct transcriptome signatures of Helicobacter suis and Helicobacter heilmannii strains upon adherence to human gastric epithelial cells

Helena BerlamontChloë De WitteEva BauwensHannah Min JouRichard DucatelleEllen De MeesterYannick GansemansDieter DeforceFilip Van NieuwerburghFreddy Haesebrouck et al.

A1 Journal Article in VETERINARY RESEARCH

2018

Photothermally triggered endosomal escape and its influence on transfection efficiency of gold-functionalized JetPEI/pDNA nanoparticles

Lotte VermeulenJuan FraireLaurens RaesEllen De MeesterSarah De KeulenaerFilip Van NieuwerburghStefaan De SmedtKatrien RemautKevin Braeckmans

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2016

A genome-wide search for epigenetically regulated genes in zebra finch using MethylCap-seq and RNA-seq

Sandra SteyaertJolien DiddensJeroen GalleEllen De MeesterSarah De KeulenaerAntje BakkerNina Sohnius-WilhelmiCarolina Frankl-VilchesAnnemie Van der LindenWim Van Criekinge et al.

A1 Journal Article in SCIENTIFIC REPORTS

Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies

Bart BroeckxFrank CoopmanGeert VerhoevenSarah De KeulenaerEllen De MeesterValérie BavegemsPascale SmetsBernadette Van RyssenFilip Van NieuwerburghDieter Deforce

A1 Journal Article in ANIMAL GENETICS

2015

Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes

Bart BroeckxChristophe HitteFrank CoopmanGeert VerhoevenSarah De KeulenaerEllen De MeesterThomas DerrienJessica AlfoldiKerstin Lindblad-TohTim Bosmans et al.

A1 Journal Article in SCIENTIFIC REPORTS

PROTEOFORMER : deep proteome coverage through ribosome profiling and MS integration

Jeroen CrappéElvis NdahAlexander KochSandra SteyaertDaria FijalkowskaSarah De KeulenaerEllen De MeesterTim De MeyerWim Van CriekingePetra Van Damme et al.

A1 Journal Article in NUCLEIC ACIDS RESEARCH

Whole exome sequencing the dog

Bart BroeckxChristophe HitteFrank CoopmanGeert VerhoevenSarah De KeulenaerEllen De MeesterThomas DerrienJessica AlfoldiKerstin Lindblad-TohTim Bosmans et al.

2014

A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites

Alexander KochDaria FijalkowskaSandra SteyaertElvis NdahJeroen CrappéSarah De KeulenaerEllen De MeesterMing MaBen ShenKris Gevaert et al.

A1 Journal Article in PROTEOMICS

Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1)

Bart BroeckxFrank CoopmanGeert VerhoevenValérie BavegemsSarah De KeulenaerEllen De MeesterFilip Van NieuwerburghDieter Deforce

A1 Journal Article in SCIENTIFIC REPORTS

2012

Massively parallel sequencing for early molecular diagnosis in Leber congenital amaurosis

Frauke CoppietersBram De WildeSteve LefeverEllen De MeesterNina De RockerCaroline Van CauwenberghFilip PattynFrançoise MeireBart LeroyJan Hellemans et al.

A1 Journal Article in GENETICS IN MEDICINE