Research Explorer

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Researcher

Bert Bogaerts

Awards & Distinctions

17 Results

2023

Transforming Shiga toxin-producing Escherichia coli surveillance through whole genome sequencing in food safety practices

Stéphanie NouwsBavo VerhaegenSarah DenayerFlorence CrombéDenis PiérardBert BogaertsKevin VannesteKathleen MarchalNancy H. C. RoosensSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2021

A bioinformatics whole-genome sequencing workflow for clinical Mycobacterium tuberculosis complex isolate analysis, validated using a reference collection extensively characterized with conventional methods and in silico approaches

Bert BogaertsThomas DelcourtKarine SoetaertSamira BoarbiPieter-Jan CeyssensRaf WinandJulien Van BraekelSigrid C. J. De KeersmaeckerNancy H. C. RoosensKathleen Marchal et al.

A1 Journal Article in JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of genetically modified microorganisms using short- and long-read whole-genome sequencing reveals contaminations of related origin in multiple commercial food enzyme products

Jolien D'aesMarie-Alice FraitureBert BogaertsSigrid C. J. De KeersmaeckerNancy H. C. RoosensKevin Vanneste

A1 Journal Article in FOODS

Development of a data-intensive centralized system for surveillance and outbreak investigation of bacterial pathogens using whole-genome sequencing

Bert BogaertsKathleen MarchalKevin VannesteSigrid De Keersmaecker

Evaluation of WGS performance for bacterial pathogen characterization with the Illumina technology optimized for time-critical situations

Bert BogaertsRaf WinandJulien Van BraekelStefan HoffmanNancy H. C. RoosensSigrid C. J. De KeersmaeckerKathleen MarchalKevin Vanneste

A1 Journal Article in MICROBIAL GENOMICS

First detection of a plasmid-encoded New-Delhi metallo-beta-lactamase-1 (NDM-1) producing Acinetobacter baumannii using whole genome sequencing, isolated in a clinical setting in Benin

Carine YehouenouBert BogaertsKevin VannesteNancy H. C. RoosensSigrid C. J. De KeersmaeckerKathleen MarchalDissou AffolabiReza SoleimaniHector Rodriguez-VillalobosFrancoise Van Bambeke et al.

A1 Journal Article in ANNALS OF CLINICAL MICROBIOLOGY AND ANTIMICROBIALS

Phylogenomic investigation of increasing fluoroquinolone resistance among Belgian cases of shigellosis between 2013 and 2018 indicates both travel-related imports and domestic circulation

Bert BogaertsRaf WinandJulien Van BraekelWesley MattheusSigrid C. J. De KeersmaeckerNancy H. C. RoosensKathleen MarchalKevin VannestePieter-Jan Ceyssens

A1 Journal Article in MICROORGANISMS

Retrospective evaluation of routine whole genome sequencing of Mycobacterium tuberculosis at the Belgian National Reference Center, 2019

Karine SoetaertPieter-Jan CeyssensSamira BoarbiBert BogaertsThomas DelcourtKevin VannesteSigrid C.J. De KeersmaeckerNancy H.C. RoosensAlexandra VodolazkaiaMarina Mukovnikova et al.

A1 Journal Article in ACTA CLINICA BELGICA

Validation strategy of a bioinformatics whole genome sequencing workflow for Shiga toxin-producing Escherichia coli using a reference collection extensively characterized with conventional methods

Bert BogaertsStéphanie NouwsBavo VerhaegenSarah DenayerJulien Van BraekelRaf WinandQiang FuFlorence CrombéDenis PiérardKathleen Marchal et al.

A1 Journal Article in MICROBIAL GENOMICS

Whole genome sequencing provides an added value to the investigation of staphylococcal food poisoning outbreaks

Stéphanie NouwsBert BogaertsBavo VerhaegenSarah DenayerLasse LaeremansKathleen MarchalNancy H. C. RoosensKevin VannesteSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Whole-genome sequencing-based antimicrobial resistance characterization and phylogenomic investigation of 19 multidrug-resistant and extended-spectrum beta-lactamase-positive escherichia coli strains collected from hospital patients in Benin in 2019

Carine Laurence YehouenouBert BogaertsSigrid C. J. De KeersmaeckerNancy H. C. RoosensKathleen MarchalEdmond TchiakpeDissou AffolabiAnne SimonFrancis Moise DossouKevin Vanneste et al.

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance

Laura Van PoelvoordeBert BogaertsQiang FuSigrid C. J. De KeersmaeckerIsabelle ThomasNina Van GoethemSteven Van GuchtRaf WinandXavier SaelensNancy Roosens et al.

A1 Journal Article in MICROBIAL GENOMICS

2020

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing

Marie-Alice FraitureBert BogaertsRaf WinandMarie DeckersNina PapazovaKevin VannesteSigrid C. J. De KeersmaeckerNancy H. C. Roosens

A1 Journal Article in SCIENTIFIC REPORTS

Targeting the 16S rRNA gene for bacterial identification in complex mixed samples : comparative evaluation of second (Illumina) and third (Oxford Nanopore Technologies) generation sequencing technologies

Raf WinandBert BogaertsStefan HoffmanLoïc LefevreMaud DelvoyeJulien Van BraekelQiang FuNancy HC RoosensSigrid CJ De KeersmaeckerKevin Vanneste

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country

Stéphanie NouwsBert BogaertsBavo VerhaegenSarah DenayerFlorence CrombéKlara De RauwDenis PiérardKathleen MarchalKevin VannesteNancy H. C. Roosens et al.

A1 Journal Article in FOODS

2019

Validation of a bioinformatics workflow for routine analysis of whole-genome sequencing data and related challenges for pathogen typing in a European National Reference Center : Neisseria meningitidis as a proof-of-concept

Bert BogaertsRaf WinandQiang FuJulien Van BraekelPieter-Jan CeyssensWesley MattheusSophie BertrandSigrid C. J. De KeersmaeckerNancy H. C. RoosensKevin Vanneste

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2017

RDM16 and STA1 regulate differential usage of exon/intron in RNA directed DNA methylation pathway

Ravi Datta SharmaBert BogaertsNeha Goyal

A1 Journal Article in GENE