Research Explorer

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Researcher

Bart Van Puyvelde

22 Results

2023

Micro‐topographies induce epigenetic reprogramming and quiescence in human mesenchymal stem cells

Steven VermeulenBart Van PuyveldeLaura Bengtsson del BarrioRuben AlmeyBernard K. van der VeerDieter DeforceMaarten DhaenensJan de Boer

A1 Journal Article in ADVANCED SCIENCE

2022

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van PuyveldeSimon DaledSander WillemsRalf GabrielsAnne Gonzalez de PeredoKarima ChaouiEmmanuelle Mouton-BarbosaDavid BouyssiéKurt BoonenChristopher J. Hughes et al.

A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics

Bart Van PuyveldeSimon DaledSander WillemsRalf GabrielsAnne Gonzalez de PeredoKarima ChaouiEmmanuelle Mouton-BarbosaDavid BouyssiéKurt BoonenChristopher J. Hughes et al.

A1 Journal Article in SCIENTIFIC DATA

A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

A1 Journal Article in SCIENTIFIC REPORTS

An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia

Lien ProvezBart Van PuyveldeLaura CorveleynNina DemeulemeesterSigrid VerhelstBeatrice LintermansSimon DaledJuliette RoelsLieven ClementLennart Martens et al.

A1 Journal Article in SCIENTIFIC DATA

Analyzing data independent acquisition mass spectrometry with noiseless ion-networks

Sander WillemsSimon DaledBart Van PuyveldeLaura De ClerckSofie Vande CasteeleFilip Van NieuwerburghDieter DeforceMaarten Dhaenens

Cov2MS: an automated matrix-independent assay for mass spectrometric detection and measurement of SARS-CoV-2 nucleocapsid protein in infectious patients

Bart Van PuyveldeKatleen Van UytfangheLaurence Van OudenhoveRalf GabrielsTessa Van RoyenArne MatthysMorteza RazaviRichard YipTerry PearsonMarijn van Hulle et al.

Cov²MS : an automated and quantitative matrix-independent assay for mass spectrometric measurement of SARS-CoV-2 nucleocapsid protein

Bart Van PuyveldeKatleen Van UytfangheLaurence Van OudenhoveRalf GabrielsTessa Van RoyenArne MatthysMorteza RazaviRichard YipTerry PearsonNicolas Drouin et al.

A1 Journal Article in ANALYTICAL CHEMISTRY

Tools for bridging discovery proteomics and pandemic preparedness

Bart Van PuyveldeDieter DeforceMaarten Dhaenens

2021

Add mass spectrometry to the pandemic toolbox

Bart Van PuyveldeMaarten Dhaenens

Editorial material

An experimental design to extract more information from MS-based histone studies

Laura De ClerckSander WillemsSimon DaledBart Van PuyveldeSigrid VerhelstLaura CorveleynDieter DeforceMaarten Dhaenens

A1 Journal Article in MOLECULAR OMICS

Cov-MS : a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatLaurence Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid Verhelst et al.

A2 Journal Article in JACS AU

Ferroptosis induction in multiple myeloma cells triggers DNA methylation and histone modification changes associated with cellular senescence

Emilie LogieBart Van PuyveldeBart CuypersAnne SchepersHerald BerghmansJelle VerdonckKris LaukensLode GodderisMaarten DhaenensDieter Deforce et al.

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Histone sample preparation for bottom-up mass spectrometry : a roadmap to informed decisions

Simon DaledSander WillemsBart Van PuyveldeLaura CorveleynSigrid VerhelstLaura De ClerckDieter DeforceMaarten Dhaenens

A2 Journal Article in PROTEOMES

Large scale toxicoepigenetics on histones : a mass spectrometry-based screening assay applied to developmental toxicity

Sigrid VerhelstBart Van PuyveldeSander WillemsSimon DaledSenne CornelisLaura CorveleynEwoud WillemsDieter DeforceLaura De ClerckMaarten Dhaenens

Universal spectrum explorer : a standalone (web-)application for cross-resource spectrum comparison

Tobias SchmidtPatroklos SamarasViktoria DorferChristian PanseTobias KockmannLeon BichmannBart Van PuyveldeYasset Perez-RiverolEric W. DeutschBernhard Kuster et al.

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH

2020

Comprehensive histone epigenetics : a mass spectrometry based screening assay to measure epigenetic toxicity

Sigrid VerhelstLaura De ClerckSander WillemsBart Van PuyveldeSimon DaledDieter DeforceMaarten Dhaenens

A2 Journal Article in METHODSX

Cov-MS : a community-based template assay for clinical MS-based protein detection in SARS-CoV-2 patients

Bart Van PuyveldeKatleen Van UytfangheOlivier TytgatL. Van OudenhoveRalf GabrielsRobbin BouwmeesterSimon DaledTim Van Den BosschePathmanaban RamasamySigrid Verhelst et al.

Proceedings of the EuBIC-MS 2020 Developers’ Meeting

Christopher AshwoodWout BittremieuxEric W. DeutschNadezhda T. DonchevaViktoria DorferRalf GabrielsVladimir GorshkovSurya GuptaAndrew R. JonesLukas Käll et al.

A2 Journal Article in EUPA OPEN PROTEOMICS

Removing the hidden data dependency of DIA with predicted spectral libraries

Bart Van PuyveldeSander WillemsRalf GabrielsSimon DaledLaura De ClerckSofie Vande CasteeleAn StaesFrancis ImpensDieter DeforceLennart Martens et al.

A1 Journal Article in PROTEOMICS

2019

Proceedings of the EuBIC Winter School 2019

Dominik KopczynskiWout BittremieuxDavid BouyssiéViktoria DorferMarie Locard-PauletBart Van PuyveldeVeit SchwämmleAlessio SoggiuSander WillemsJulian Uszkoreit

Editorial material

hSWATH : unlocking SWATH’s full potential for an untargeted histone perspective

Laura De ClerckSander WillemsRoberta NoberiniCamilla RestelliniBart Van PuyveldeSimon DaledTiziana BonaldiDieter DeforceMaarten Dhaenens

A1 Journal Article in JOURNAL OF PROTEOME RESEARCH