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Researcher
Aurélien Carlier
Profile
Projects
Publications
Activities
Awards & Distinctions
55
Results
2024
Pseudomonas fortuita sp. nov., isolated from the endosphere of a wild yam
Aurélien Carlier
Marine Beaumel
Sandra Moreau
Tessa Acar
Thibault Géry Sana
Margo Cnockaert
Peter Vandamme
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2024
2023
Cyclitol metabolism is a central feature of Burkholderia leaf symbionts
Bram Danneels
Monique Blignaut
Guillaume Marti
Simon Sieber
Peter Vandamme
Marion Meyer
Aurélien Carlier
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2023
Functional genomics of select endophytic and phytopathogenic Burkholderiales bacteria
Frédéric De Meyer
Aurélien Carlier
Peter Vandamme
Dissertation
2023
Govania unica gen. nov., sp. nov., a rare biosphere bacterium that represents a novel family in the class Alphaproteobacteria
Peter Vandamme
Charlotte Peeters
Gowri Amanda Hettiarachchi
Margo Cnockaert
Aurélien Carlier
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2023
2022
Exploring the antimicrobial, biocontrol and bioremediation potential of Burkholderia sensu lato
Sarah Vanwijnsberghe
Peter Vandamme
Aurélien Carlier
Dissertation
2022
The Dioscorea-Orrella association as model for evolution, transmission and specificity in heritable leaf symbiosis
Tessa Acar
Aurélien Carlier
Dissertation
2022
2021
Evolution of obligate leaf endophytic bacteria
Bram Danneels
Aurélien Carlier
Dissertation
2021
Induction of antibiotic specialized metabolism by co-culturing in a collection of phyllosphere bacteria
Shanshan Qi
Alexander Bogdanov
Margo Cnockaert
Tessa Acar
Sarah Ranty-Roby
Tom Coenye
Peter Vandamme
Gabriele M. König
Max Crüsemann
Aurélien Carlier
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2021
Isolation of root endophytic bacteria and characterization of their interactions with plant secondary metabolites : focus on Alkanna tinctoria and Lithospermum officinale
Angélique Rat
Anne Willems
Aurélien Carlier
Dissertation
2021
Mining the biosynthetic potential of bacterial communities from soil and the Arabidopsis phyllosphere
Shanshan Qi
Aurélien Carlier
Peter Vandamme
Dissertation
2021
Paenibacillus foliorum sp. nov., Paenibacillus phytohabitans sp. nov., Paenibacillus plantarum sp. nov., Paenibacillus planticolens sp. nov., Paenibacillus phytorum sp. nov. and Paenibacillus germinis sp. nov., isolated from the Arabidopsis thaliana phyllosphere
Shanshan Qi
Margo Cnockaert
Aurélien Carlier
Peter Vandamme
A1
Journal Article
in
International Journal of Systematic and Evolutionary Microbiology
2021
Pedobacter gandavensis sp. nov., Pedobacter foliorum sp. nov. and Pedobacter planticolens sp. nov., isolated from leaves of Arabidopsis thaliana
Shanshan Qi
Margo Cnockaert
Aurélien Carlier
Peter Vandamme
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2021
Report patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing
Bram Danneels
Juan Viruel
Krista Mcgrath
Steven B. Janssens
Nathan Wales
Paul Wilkin
Aurélien Carlier
A1
Journal Article
in
CURRENT BIOLOGY
2021
2020
Orrella amnicola sp. nov., isolated from a freshwater river, reclassification of Algicoccus marinus as Orrella marina comb. nov., and emended description of the genus Orrella
Shih-Yi Sheu
Li-Chu Chen
Che-Chia Yang
Aurélien Carlier
Wen-Ming Chen
A1
Journal Article
in
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
2020
PaSiT : a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing
Gleb Goussarov
Ilse Cleenwerck
Mohamed Mysara
Natalie Leys
Pieter Monsieurs
Guillaume Tahon
Aurélien Carlier
Peter Vandamme
Rob Van Houdt
A1
Journal Article
in
BIOINFORMATICS
2020
2019
Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae
Frédéric De Meyer
Bram Danneels
Tessa Acar
Rado Rasolomampianina
Mamy Tiana Rajaonah
Vololoniaina Jeannoda
Aurélien Carlier
A1
Journal Article
in
ISME JOURNAL
2019
Introducing SPeDE : high-throughput dereplication and accurate determination of microbial diversity from matrix-assisted laser desorption-ionization time of flight mass spectrometry data
Charles Dumolin
Maarten Aerts
Bart Verheyde
Simon Schellaert
Tim Vandamme
Felix Van der Jeugt
Evelien De Canck
Margo Cnockaert
Anneleen Wieme
Ilse Cleenwerck
et al.
A1
Journal Article
in
MSYSTEMS
2019
Orrella
Aurélien Carlier
Bookchapter
in
Bergey's manual of systematics of archaea and bacteria
2019
Synthesis and biological evaluation of the novel growth inhibitor streptol glucoside, isolated from an obligate plant symbiont
Chien-Chi Hsiao
Simon Sieber
Antri Georgiou
Aurélien Bailly
Despina Emmanouilidou
Aurélien Carlier
Leo Eberl
Karl Gademann
A1
Journal Article
in
CHEMISTRY-A EUROPEAN JOURNAL
2019
2018
Abditibacterium utsteinense sp. nov., the first cultivated member of candidate phylum FBP, isolated from ice-free Antarctic soil samples
Guillaume Tahon
Bjorn Tytgat
Liesbeth Lebbe
Aurélien Carlier
Anne Willems
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2018
Heterologous expression, biosynthetic studies and ecological function of the selective Gq-signaling inhibitor FR900359
Max Crüsemann
Raphael Reher
Isabella Schamari
Alexander O Brachmann
Tsubasa Ohbayashi
Markus Kuschak
Davide Malfacini
Alexander Seidinger
Marta Pinto-Carbó
René Richarz
et al.
A1
Journal Article
in
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
2018
Leaf nodule symbiosis : function and transmission of obligate bacterial endophytes
Marta Pinto-Carbó
Karl Gademann
Leo Eberl
Aurélien Carlier
A1
Journal Article
in
CURRENT OPINION IN PLANT BIOLOGY
2018
Patterns of nucleotide deletion and insertion inferred from bacterial pseudogenes
Bram Danneels
Marta Pinto-Carbó
Aurélien Carlier
A1
Journal Article
in
GENOME BIOLOGY AND EVOLUTION
2018
2017
Characterization of the emerging zoonotic pathogen Arcobacter thereius by whole genome sequencing and comparative genomics
Francesca Rovetto
Aurélien Carlier
Anne-Marie Van den Abeele
Koen Illeghems
Filip Van Nieuwerburgh
Luca Cocolin
Kurt Houf
A1
Journal Article
in
PLOS ONE
2017
Comparative genomics of Burkholderia multivorans, a ubiquitous pathogen with a highly conserved genomic structure
Charlotte Peeters
Vaughn S Cooper
Philip J Hatcher
Bart Verheyde
Aurélien Carlier
Peter Vandamme
A1
Journal Article
in
PLOS ONE
2017
Comparative genomics of Burkholderia singularis sp. nov., a low G+C content, free-living bacterium that defies taxonomic dissection of the genus Burkholderia
Peter Vandamme
Charlotte Peeters
Birgit De Smet
Erin P Price
Derek S Sarovich
Deborah A Henry
Trevor J Hird
James EA Zlosnik
Mark Mayo
Jeffrey Warner
et al.
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2017
Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis
Aurélien Carlier
Margo Cnockaert
Linda Fehr
Peter Vandamme
Leo Eberl
A1
Journal Article
in
SYSTEMATIC AND APPLIED MICROBIOLOGY
2017
The essential genome of Burkholderia cenocepacia H111
Steven Higgins
Maria Sanchez-Contreras
Stefano Gualdi
Marta Pinto-Carbó
Aurélien Carlier
Leo Eberl
A1
Journal Article
in
JOURNAL OF BACTERIOLOGY
2017
2016
Evidence of horizontal gene transfer between obligate leaf nodule symbionts
Marta Pinto-Carbó
Simon Sieber
Steven Dessein
Thomas Wicker
Brecht Verstraete
Karl Gademann
Leo Eberl
Aurélien Carlier
A1
Journal Article
in
ISME JOURNAL
2016
Molecular mechanisms underlying the close association between soil Burkholderia and fungi
Nejc Stopnisek
Daniela Zühlke
Aurélien Carlier
Albert Barberán
Noah Fierer
Dörte Becher
Katharina Riedel
Leo Eberl
Laure Weisskopf
A1
Journal Article
in
ISME JOURNAL
2016
The endophyte Candidatus Burkholderia crenata of the TCM plant Ardisia crenata produces the selective Gq-inhibitor FR900359
R Reher
I Schamari
S Kehraus
S Annala
M Kuschak
T Schäberle
M Crüsemann
Aurélien Carlier
L Eberl
CE Müller
et al.
C3
Conference
2016
The genome analysis of Candidatus Burkholderia crenata reveals that secondary metabolism may be a key function of the Ardisia crenata leaf nodule symbiosis
Aurélien Carlier
Linda Fehr
Marta Pinto-Carbó
Till Schäberle
Raphael Reher
Steven Dessein
Gabriele König
Leo Eberl
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2016
The role of siderophores in metal homeostasis of members of the genus Burkholderia
Anugraha Mathew
Christian Jenul
Aurélien Carlier
Leo Eberl
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY REPORTS
2016
2015
ChemInform abstract: Isolation and total synthesis of kirkamide, an aminocyclitol from an obligate leaf nodule symbiont
Simon Sieber
Aurélien Carlier
Markus Neuburger
Giselher Grabenweger
Leo Eberl
Karl Gademann
Other
2015
Isolation and total synthesis of kirkamide, an aminocyclitol from an obligate leaf nodule symbiont
Simon Sieber
Aurélien Carlier
Markus Neuburger
Giselher Grabenweger
Leo Eberl
Karl Gademann
A1
Journal Article
in
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
2015
Microbial biofilms and quorum sensing
Aurélien Carlier
Gabriella Pessi
Leo Eberl
Bookchapter
in
Principles of plant-microbe interactions : microbes for sustainable agriculture
2015
2014
Genome sequence of Burkholderia cenocepacia H111, a cystic fibrosis airway isolate
Aurélien Carlier
Kirsty Agnoli
Gabriella Pessi
Angela Suppiger
Christian Jenul
Nadine Schmid
Burkhard Tummler
Marta Pinto-Carbo
Leo Eberl
A4
Journal Article
in
GENOME ANNOUNCEMENTS
2014
2013
A novel siderophore-independent strategy of iron uptake in the genus Burkholderia
Anugraha Mathew
Leo Eberl
Aurélien Carlier
A1
Journal Article
in
MOLECULAR MICROBIOLOGY
2013
Proteomics analysis of Psychotria leaf nodule symbiosis : improved genome annotation and metabolic predictions
Aurélien Carlier
Ulrich Omasits
Christian H Ahrens
Leo Eberl
A1
Journal Article
in
MOLECULAR PLANT-MICROBE INTERACTIONS
2013
The third replicon of members of the Burkholderia cepacia complex, plasmid pC3, plays a role in stress tolerance
Kirsty Agnoli
Carmen Frauenknecht
Roman Freitag
Stephan Schwager
Christian Jenul
Annette Vergunst
Aurélien Carlier
Leo Eberl
A1
Journal Article
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2013
2012
Identification of Burkholderia cenocepacia Strain H111 virulence factors using nonmammalian infection hosts
Stephan Schwager
Kirsty Agnoli
Manuela Köthe
Friederike Feldmann
Michael Givskov
Aurélien Carlier
Leo Eberl
A1
Journal Article
in
INFECTION AND IMMUNITY
2012
The AHL- and BDSF-dependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111
Nadine Schmid
Gabriella Pessi
Yinyue Deng
Claudio Aguilar
Aurélien Carlier
Alexander Grunau
Ulrich Omasits
Lian-Hui Zhang
Christian H Ahrens
Leo Eberl
A1
Journal Article
in
PLOS ONE
2012
The eroded genome of a Psychotria leaf symbiont : hypotheses about lifestyle and interactions with its plant host
Aurélien Carlier
Leo Eberl
A1
Journal Article
in
ENVIRONMENTAL MICROBIOLOGY
2012
2011
Exposing the third chromosome of Burkholderia cepacia complex strains as a virulence plasmid
K Agnoli
S Schwager
S Uehlinger
A Vergunst
DF Viteri
DT Nguyen
PA Sokol
Aurélien Carlier
L Eberl
A1
Journal Article
in
MOLECULAR MICROBIOLOGY
2011
2010
Cell-cell communication in biofilms of Gram-negative bacteria
Claudio Aguilar
Aurélien Carlier
Kathrin Riedel
Leo Eberl
Bookchapter
in
Bacterial signaling
2010
2009
Identification and characterization of three novel EsaI/EsaR quorum-sensing controlled stewartan exopolysaccharide biosynthetic genes in Pantoea stewartii ssp. stewartii
Aurélien Carlier
Lindsey Burbank
Susanne B von Bodman
A1
Journal Article
in
MOLECULAR MICROBIOLOGY
2009
Structure/function analysis of the Pantoea stewartii quorum-sensing regulator EsaR as an activator of transcription
Daniel J Schu
Aurélien Carlier
Katherine P Jamison
Susanne von Bodman
Ann M Stevens
A1
Journal Article
in
JOURNAL OF BACTERIOLOGY
2009
2008
Role of quorum-sensing regulation in pathogenesis of Pantoea stewartii subsp. stewartii
Susanne B von Bodman
Aurélien Carlier
Ann M Stevens
Bookchapter
in
Chemical communication among bacteria
2008
2006
The rcsA promoter of Pantoea stewartii subsp. stewartii features a low-level constitutive promoter and an EsaR quorum-sensing-regulated promoter
Aurélien Carlier
SB von Bodman
A1
Journal Article
in
JOURNAL OF BACTERIOLOGY
2006
2005
N-hexanoyl-l-homoserine lactone, a mediator of bacterial quorum-sensing regulation, exhibits plant-dependent stability and may be inactivated by germinating Lotus corniculatus seedlings
Laurie Delalande
Denis Faure
Aurélie Raffoux
Stéphane Uroz
Cathy D'Angelo-Picard
Miena Elasri
Aurélien Carlier
Romain Berruyer
Annik Petit
Paul Williams
et al.
A1
Journal Article
in
FEMS MICROBIOLOGY ECOLOGY
2005
The cell density-dependent expression of stewartan exopolysaccharide in Pantoea stewartii ssp. stewartii is a function of EsaR-mediated repression of the rcsA gene
Timothy Minogue
Aurélien Carlier
Maria D Koutsoudis
Susanne B Von Bodman
A1
Journal Article
in
MOLECULAR MICROBIOLOGY
2005
2004
Bacterial populations in the rhizosphere of tobacco plants producing the quorum-sensing signals hexanoyl-homoserine lactone and 3-oxo-hexanoyl-homoserine lactone
Cathy D'Angelo-Picard
Denis Faure
Aurélien Carlier
Stéphane Uroz
Aurélie Raffoux
Rupert Fray
Yves Dessaux
A1
Journal Article
in
FEMS MICROBIOLOGY ECOLOGY
2004
The assimilation of γ-butyrolactone in Agrobacterium tumefaciens C58 interferes with the accumulation of the N-acyl-homoserine lactone signal
Aurélien Carlier
Romain Chevrot
Yves Dessaux
Denis Faure
A1
Journal Article
in
MOLECULAR PLANT-MICROBE INTERACTIONS
2004
2003
Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria
S Uroz
C D'Angelo-Picard
Aurélien Carlier
M Elasri
C Sicot
A Petit
P Oger
D Faure
Y Dessaux
A1
Journal Article
in
MICROBIOLOGY-SGM
2003
The Ti plasmid of Agrobactetium tumefaciens harbors an attM-paralogous gene, aiiB, also encoding N-acyl homoserine lactonase activity
Aurélien Carlier
S Uroz
B Smadja
R Fray
X Latour
Y Dessaux
D Faure
A1
Journal Article
in
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
2003