Research Explorer

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Researcher

Assia Saltykova

Awards & Distinctions

11 Results

2022

Detection and identification of authorized and unauthorized GMOs using high-throughput sequencing with the support of a sequence-based GMO database

Assia SaltykovaJulien Van BraekelNina PapazovaMarie-Alice FraitureDieter DeforceKevin VannesteSigrid C. J. De KeersmaeckerNancy H. Roosens

A2 Journal Article in FOOD CHEMISTRY: MOLECULAR SCIENCES

Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

Assia SaltykovaKathleen MarchalDieter DeforceSigrid De KeersmaeckerNancy Roosens

2021

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence BuytaersAssia SaltykovaWesley MattheusValeska LaisnezBavo VerhaegenNancy H. C. RoosensKevin VannesteNaiima HammamiBrigitte PochetVera Cantaert et al.

A1 Journal Article in MICROBIAL GENOMICS

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence BuytaersAssia SaltykovaSarah DenayerBavo VerhaegenKevin VannesteNancy H. C. RoosensDenis PierardKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence BuytaersAssia SaltykovaSarah DenayerBavo VerhaegenKevin VannesteNancy H. C. RoosensDenis PiérardKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in MICROORGANISMS

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Bas BerbersAssia SaltykovaCristina Garcia-GraellsPatrick PhilippFabrice ArellaKathleen MarchalRaf WinandKevin VannesteNancy H. C. RoosensSigrid C. J. De Keersmaecker

A1 Journal Article in SCIENTIFIC REPORTS

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia SaltykovaFlorence BuytaersSarah DenayerBavo VerhaegenDenis PiérardNancy H. C. RoosensKathleen MarchalSigrid C. J. De Keersmaecker

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2019

Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept

Assia SaltykovaWesley MattheusSophie BertrandNancy HC RoosensKathleen MarchalSigrid CJ De Keersmaecker

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2018

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Assia SaltykovaVéronique WuytsWesley MattheusSophie BertrandNancy HC RoosensKathleen MarchalSigrid De Keersmaecker

A1 Journal Article in PLOS ONE

The Chara genome : secondary complexity and implications for plant terrestrialization

Tomoaki NishiyamaHidetoshi SakayamaJan de VriesHenrik BuschmannDenis Saint-MarcouxKristian K UllrichFabian B HaasLisa VanderstraetenDirk BeckerDaniel Lang et al.

A1 Journal Article in CELL

2015

Identifying prokaryotic consortia that live in close interactions with algae

Assia SaltykovaSergio Pulido-TamayoMarie PazoutovaStefan A RensingTomoaki NishiyamaYves Van de PeerKathleen MarchalStephane Rombauts