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Researcher
Assia Saltykova
Profile
Projects
Publications
Activities
10
Results
2022
Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety
Assia Saltykova
Kathleen Marchal
Dieter Deforce
Dissertation
2022
2021
Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak
Florence Buytaers
Assia Saltykova
Kevin Vanneste
Kathleen Marchal
A1
Journal Article
in
MICROBIAL GENOMICS
2021
Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies
Florence Buytaers
Assia Saltykova
Bavo Verhaegen
Kevin Vanneste
Kathleen Marchal
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2021
2020
A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine
Florence Buytaers
Assia Saltykova
Kathleen Marchal
A1
Journal Article
in
MICROORGANISMS
2020
Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus
Assia Saltykova
Kathleen Marchal
A1
Journal Article
in
SCIENTIFIC REPORTS
2020
Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study
Assia Saltykova
Florence Buytaers
Kathleen Marchal
A1
Journal Article
in
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
2020
2019
Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept
Assia Saltykova
Kathleen Marchal
A1
Journal Article
in
FRONTIERS IN MICROBIOLOGY
2019
2018
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-
Assia Saltykova
Kathleen Marchal
A1
Journal Article
in
PLOS ONE
2018
The Chara genome : secondary complexity and implications for plant terrestrialization
Lisa Vanderstraeten
Stephane Rombauts
Assia Saltykova
Filip Van Nieuwerburgh
Dieter Deforce
Yves Van de Peer
Dominique Van Der Straeten
A1
Journal Article
in
CELL
2018
2015
Identifying prokaryotic consortia that live in close interactions with algae
Assia Saltykova
Yves Van de Peer
Kathleen Marchal
Stephane Rombauts
C3
Conference
2015