Research Explorer

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Researcher

Assia Saltykova

10 Results

2022

Development, evaluation and optimization of next generation sequencing data analysis tools in support of a fast response for public health and food chain safety

Assia SaltykovaKathleen MarchalDieter Deforce

2021

Application of a strain- level shotgun metagenomics approach on food samples : resolution of the source of a Salmonella food-borne outbreak

Florence BuytaersAssia SaltykovaKevin VannesteKathleen Marchal

A1 Journal Article in MICROBIAL GENOMICS

Towards real-time and affordable strain-level metagenomics-based foodborne outbreak investigations using Oxford nanopore sequencing technologies

Florence BuytaersAssia SaltykovaBavo VerhaegenKevin VannesteKathleen Marchal

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2020

A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine

Florence BuytaersAssia SaltykovaKathleen Marchal

A1 Journal Article in MICROORGANISMS

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus

Assia SaltykovaKathleen Marchal

A1 Journal Article in SCIENTIFIC REPORTS

Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study

Assia SaltykovaFlorence BuytaersKathleen Marchal

A1 Journal Article in INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

2019

Detailed evaluation of data analysis tools for subtyping of bacterial isolates based on whole genome sequencing : Neisseria meningitidis as a proof of concept

Assia SaltykovaKathleen Marchal

A1 Journal Article in FRONTIERS IN MICROBIOLOGY

2018

Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5], 12:i:-

Assia SaltykovaKathleen Marchal

A1 Journal Article in PLOS ONE

The Chara genome : secondary complexity and implications for plant terrestrialization

Lisa VanderstraetenStephane RombautsAssia SaltykovaFilip Van NieuwerburghDieter DeforceYves Van de PeerDominique Van Der Straeten

A1 Journal Article in CELL

2015

Identifying prokaryotic consortia that live in close interactions with algae

Assia SaltykovaYves Van de PeerKathleen MarchalStephane Rombauts