Research Explorer

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Researcher

Arnout Van Messem

Awards & Distinctions

40 Results

2024

Generating and evaluating synthetic DNA sequences with splice sites using generative adversarial networks

Espoir KabangaJiwon KohYoungmin KohKangmin KimNina GeiregatArnout Van MessemWesley De Neve

Grasshopper optimization algorithm (GOA) : a novel algorithm or a variant of PSO?

Negin HarandiArnout Van MessemWesley De NeveJoris Vankerschaver

Interpretable rotator cuff tear diagnosis using MRI slides with CAMscore and SHAP

Homin ParkIlho YunMi Jung KimKhoa Tuan NguyenArnout Van MessemWesley De Neve

Leveraging human-machine interactions for computer vision dataset quality enhancement

Esla Timothy AnzakuHyesoo HongJin-Woo ParkWonjun YangKangmin KimJongBum WonDeshika Vinoshani Kumari HerathArnout Van MessemWesley De Neve

Towards interpretable multitask learning for splice site and translation initiation site prediction

Espoir KabangaArnout Van MessemWesley De Neve

2023

CRISPR-Cas-Docker : web-based in silico docking and machine learning-based classification of crRNAs with Cas proteins

Homin ParkJong Bum WonYunseol ParkEsla Timothy AnzakuJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in BMC BIOINFORMATICS

How to make sense of 3D representations for plant phenotyping : a compendium of processing and analysis techniques

Negin HarandiBreght VandenbergheJoris VankerschaverStephen DepuydtArnout Van Messem

A1 Journal Article in PLANT METHODS

Know your self-supervised learning : a survey on image-based generative and discriminative training

Utku ÖzbulakHyun Jung LeeBeril BogaEsla Timothy AnzakuHomin ParkArnout Van MessemWesley De NeveJoris Vankerschaver

A2 Journal Article in TRANSACTIONS ON MACHINE LEARNING RESEARCH

Model reduction and parameter estimation for kinetic models of biochemical reaction networks

Manvel GasparyanShodhan RaoArnout Van MessemWillem Waegeman

MuSe-personalization 2023 : feature engineering, hyperparameter optimization and transformer-encoder re-discovery

Homin ParkGang Hyun KimArnout Van MessemWesley De Neve

Parameter estimation for models of chemical reaction networks from experimental data of reaction rates

Manvel GasparyanArnout Van MessemShodhan Rao

A1 Journal Article in INTERNATIONAL JOURNAL OF CONTROL

Tryp : a dataset of microscopy images of unstained thick blood smears for trypanosome detection

Esla Timothy AnzakuMohammed Aliy MohammedUtku ÖzbulakJongbum WonHyesoo HongJanarthanan KrishnamoorthySofie Van HoeckeStefan MagezArnout Van MessemWesley De Neve

A1 Journal Article in SCIENTIFIC DATA

2022

In silico optimization of RNA-protein interactions for CRISPR-Cas13-based antimicrobials

Homin ParkYunseol ParkUrta BeraniEunkyu BangJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in BIOLOGY DIRECT

MP-Net : deep learning-based segmentation for fluorescence microscopy images of microplastics isolated from clams

Homin ParkSanghyeon ParkMaria Krishna de GuzmanJi Yeon BaekTanja Cirkovic VelickovicArnout Van MessemWesley De Neve

A1 Journal Article in PLOS ONE

Prevalence of adversarial examples in neural networks : attacks, defenses, and opportunities

Utku ÖzbulakWesley De NeveArnout Van Messem

Rethinking protein drug design with highly accurate structure prediction of anti-CRISPR proteins

Homin ParkYunseol ParkJoris VankerschaverArnout Van MessemWesley De NeveHyunjin Shim

A1 Journal Article in PHARMACEUTICALS

2021

3-D deep learning-based item classification for belt conveyors targeting packaging and logistics

Homin ParkByungkon KangArnout Van MessemWesley De Neve

Automatic detection of Trypanosomosis in thick blood smears using image pre-processing and deep learning

Taewoo JungEsla Timothy AnzakuUtku ÖzbulakStefan MagezArnout Van MessemWesley De Neve

Developing a segmentation model for microscopic images of microplastics isolated from clams

Ji Yeon BaekMaria Krishna de GuzmanHomin ParkSanghyeon ParkBoyeon ShinTanja Cirkovic VelickovicArnout Van MessemWesley De Neve

Evaluating adversarial attacks on ImageNet : a reality check on misclassification classes

Utku ÖzbulakMaura PintorArnout Van MessemWesley De Neve

Investigating the significance of adversarial attacks and their relation to interpretability for radar-based human activity recognition systems

Utku ÖzbulakBaptist VandersmissenAzarakhsh JalalvandIvo CouckuytArnout Van MessemWesley De Neve

A1 Journal Article in COMPUTER VISION AND IMAGE UNDERSTANDING

Selection of source images heavily influences the effectiveness of adversarial attacks

Utku ÖzbulakEsla Timothy AnzakuWesley De NeveArnout Van Messem

Towards a quantitative analysis of class activation mapping for deep learning-based computer-aided diagnosis

Hanul KangHomin ParkYuju AhnArnout Van MessemWesley De Neve

Translation initiation site prediction using deep learning and synthetic datasets

Yunseol ParkEspoir KabangaJasper ZuallaertHyunjin ShimArnout Van MessemWesley De Neve

2020

An automated model reduction method for biochemical reaction networks

Manvel GasparyanArnout Van MessemShodhan Rao

A1 Journal Article in SYMMETRY-BASEL

Item measurement for logistics-oriented belt conveyor systems using a scenario-driven approach and automata-based control design

Homin ParkArnout Van MessemWesley De Neve

Perturbation analysis of gradient-based adversarial attacks

Utku ÖzbulakManvel GasparyanWesley De NeveArnout Van Messem

A1 Journal Article in PATTERN RECOGNITION LETTERS

Regional image perturbation reduces Lp norms of adversarial examples while maintaining model-to-model transferability

Utku ÖzbulakJonathan PeckWesley De NeveBart GoossensYvan SaeysArnout Van Messem

Support vector machines : a robust prediction method with applications in bioinformatics

Arnout Van Messem

Bookchapter in Principles and methods for data science

2019

Box-Scan : an efficient and effective algorithm for box dimension measurement in conveyor systems using a single RGB-D camera

Homin ParkArnout Van MessemWesley De Neve

Impact of adversarial examples on deep learning models for biomedical image segmentation

Utku ÖzbulakArnout Van MessemWesley De Neve

Not all adversarial examples require a complex defense : identifying over-optimized adversarial examples with IQR-based logit thresholding

Utku ÖzbulakArnout Van MessemWesley De Neve

2018

A novel technique for model reduction of biochemical reaction networks

Manvel GasparyanArnout Van MessemShodhan Rao

How the Softmax output is misleading for evaluating the strength of adversarial examples

Utku ÖzbulakWesley De NeveArnout Van Messem

2016

State of affairs of osteopathy in the Benelux: Benelux Osteosurvey 2013

Patrick LS Van DunMioara Alina NicolaieArnout Van Messem

A1 Journal Article in INTERNATIONAL JOURNAL OF OSTEOPATHIC MEDICINE

2015

Machteld VarewyckArnout Van Messem

2011

Robustness and consistency results for support vector machines

Arnout Van MessemUwe EinmahlAndreas Christmann

2010

A review on consistency and robustness properties of support vector machines for heavy-tailed distributions

Arnout Van MessemAndreas Christmann

A1 Journal Article in ADVANCES IN DATA ANALYSIS AND CLASSIFICATION

2009

On consistency and robustness properties of Support Vector Machines for heavy-tailed distributions

Andreas ChristmannArnout Van MessemIngo Steinwart

A1 Journal Article in STATISTICS AND ITS INTERFACE

2008

Bouligand derivatives and robustness of support vector machines for regression

Andreas ChristmannArnout Van Messem

A1 Journal Article in JOURNAL OF MACHINE LEARNING RESEARCH